Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G014790 Cucumis sativus L. HOM05D003434 ORTHO05D004465 2.3e-81 305.4 148 100.0
CsaV3_7G022570 Cucumis sativus L. HOM05D003434 ORTHO05D004465 8.8e-81 303.5 148 99.3
MELO3C015338.2 Cucumis melo HOM05D003434 ORTHO05D004465 1.0e-68 263.5 142 90.1
ClCG03G016840 Citrullus lanatus HOM05D003434 ORTHO05D004465 1.4e-67 259.6 142 88.7
Sed0008309 Sechium edule HOM05D003434 ORTHO05D004465 2.7e-66 255.4 142 87.3
Sed0012815 Sechium edule HOM05D003434 ORTHO05D004465 1.5e-64 249.6 142 85.2
ClCG01G010880 Citrullus lanatus HOM05D003434 ORTHO05D004465 1.8e-57 226.1 198 62.6
Sc21g0001090 Simmondsia chinensis HOM05D003434 ORTHO05D004465 2.0e-56 222.6 142 77.5
CSS0016315 Camellia sinensis var. sinensis HOM05D003434 ORTHO05D004465 1.3e-55 219.9 142 76.8
Lj1A848T59 Lonicera japonica HOM05D003434 ORTHO05D004465 3.7e-55 218.4 142 75.4
Duzib213G0358 Durio zibethinus HOM05D003434 ORTHO05D004465 4.8e-55 218.0 145 74.5
Sp3g13710 Schrenkiella parvula HOM05D003434 ORTHO05D004465 1.1e-54 216.9 144 75.7
THA.LOC104815549 Tarenaya hassleriana HOM05D003434 ORTHO05D004465 1.1e-54 216.9 142 74.6
Gohir.A11G282773 Gossypium hirsutum HOM05D003434 ORTHO05D004465 1.4e-54 216.5 144 73.6
THA.LOC104818062 Tarenaya hassleriana HOM05D003434 ORTHO05D004465 1.4e-54 216.5 142 74.6
Gohir.D11G296500 Gossypium hirsutum HOM05D003434 ORTHO05D004465 1.8e-54 216.1 144 73.6
Gorai.007G319600 Gossypium raimondii HOM05D003434 ORTHO05D004465 1.8e-54 216.1 144 73.6
Hma1.2p1_3282F.1_g334840 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 2.4e-54 215.7 142 74.6
CiPaw.12G120800 Carya illinoinensis HOM05D003434 ORTHO05D004465 3.1e-54 215.3 142 75.4
Lj8A158G80 Lonicera japonica HOM05D003434 ORTHO05D004465 4.1e-54 214.9 142 73.9
C01p49000 Brassica napus HOM05D003434 ORTHO05D004465 7.0e-54 214.2 142 73.9
BolC1t04864H Brassica oleracea HOM05D003434 ORTHO05D004465 7.0e-54 214.2 142 73.9
Hma1.2p1_2288F.1_g318950 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 7.0e-54 214.2 142 74.6
BcaB06g29576 Brassica carinata HOM05D003434 ORTHO05D004465 9.1e-54 213.8 145 75.2
BolC5t33857H Brassica oleracea HOM05D003434 ORTHO05D004465 9.1e-54 213.8 145 75.2
COL.COLO4_09433 Corchorus olitorius HOM05D003434 ORTHO05D004465 9.1e-54 213.8 145 73.1
Thhalv10011666m.g Eutrema salsugineum HOM05D003434 ORTHO05D004465 9.1e-54 213.8 143 75.5
Sabra11G0108200 Salix brachista HOM05D003434 ORTHO05D002822 9.1e-54 213.8 143 75.5
AL3G28010 Arabidopsis lyrata HOM05D003434 ORTHO05D004465 1.6e-53 213.0 142 72.5
Potri.011G122200 Populus trichocarpa HOM05D003434 ORTHO05D004465 1.6e-53 213.0 143 74.8
Duzib170G0474 Durio zibethinus HOM05D003434 ORTHO05D004465 2.7e-53 212.2 145 74.5
A01p38760 Brassica napus HOM05D003434 ORTHO05D004465 3.5e-53 211.8 142 73.2
C05p51700 Brassica napus HOM05D003434 ORTHO05D004465 3.5e-53 211.8 145 74.5
Potri.001G403100 Populus trichocarpa HOM05D003434 ORTHO05D004465 3.5e-53 211.8 143 74.8
Thecc.07G077100 Theobroma cacao HOM05D003434 ORTHO05D004465 3.5e-53 211.8 145 73.1
Haze_09473 Corylus avellana HOM05D003434 ORTHO05D004465 5.9e-53 211.1 142 74.6
Haze_09477 Corylus avellana HOM05D003434 ORTHO05D004465 5.9e-53 211.1 142 74.6
HanXRQChr10g0306991 Helianthus annuus HOM05D003434 ORTHO05D004465 5.9e-53 211.1 142 72.5
CANSAT78G2387 Cannabis sativa HOM05D003434 ORTHO05D004465 7.7e-53 210.7 142 73.2
A03p39310 Brassica napus HOM05D003434 ORTHO05D004465 1.0e-52 210.3 142 73.9
BraA03t13081Z Brassica rapa HOM05D003434 ORTHO05D004465 1.0e-52 210.3 142 73.9
Haze_07077 Corylus avellana HOM05D003434 ORTHO05D004465 1.0e-52 210.3 142 74.6
TWI38G2119 Tripterygium wilfordii HOM05D003434 ORTHO05D004465 1.0e-52 210.3 142 74.6
CARHR090510 Cardamine hirsuta HOM05D003434 ORTHO05D004465 1.3e-52 209.9 142 71.8
Glyma.18G278000 Glycine max HOM05D003434 ORTHO05D004465 1.3e-52 209.9 143 71.3
Hma1.2p1_1789F.1_g302480 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 1.3e-52 209.9 142 73.2
vmacro19412 Vaccinium macrocarpon HOM05D003434 ORTHO05D004465 1.3e-52 209.9 140 74.3
BcaB04g20924 Brassica carinata HOM05D003434 ORTHO05D004465 1.7e-52 209.5 142 71.8
BcaC01g03873 Brassica carinata HOM05D003434 ORTHO05D004465 1.7e-52 209.5 142 73.9
C03p47690 Brassica napus HOM05D003434 ORTHO05D004465 1.7e-52 209.5 142 73.9
Cfa020548 Carpinus fangiana HOM05D003434 ORTHO05D004465 1.7e-52 209.5 142 73.9
Carub.0003s1518 Capsella rubella HOM05D003434 ORTHO05D004465 2.2e-52 209.1 142 72.5
Cc05_g12350 Coffea canephora HOM05D003434 ORTHO05D004465 2.2e-52 209.1 143 74.1
Thhalv10021159m.g Eutrema salsugineum HOM05D003434 ORTHO05D004465 2.2e-52 209.1 144 74.3
GSVIVG01028448001 Vitis vinifera HOM05D003434 ORTHO05D004465 2.2e-52 209.1 142 71.1
BolC3t17044H Brassica oleracea HOM05D003434 ORTHO05D004465 2.9e-52 208.8 142 73.2
Lsat_1_v5_gn_9_57521 Lactuca sativa HOM05D003434 ORTHO05D004465 2.9e-52 208.8 142 71.8
AT3G15460 Arabidopsis thaliana HOM05D003434 ORTHO05D004465 5.0e-52 208.0 142 71.8
Glyma.08G255000 Glycine max HOM05D003434 ORTHO05D004465 5.0e-52 208.0 143 71.3
RcHm_v2.0_Chr5g0034581 Rosa chinensis HOM05D003434 ORTHO05D004465 6.5e-52 207.6 142 75.4
Phvul.008G022950 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 8.5e-52 207.2 147 72.8
Phvul.011G077301 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 8.5e-52 207.2 147 72.8
Rhsim06G0196400 Rhododendron simsii HOM05D003434 ORTHO05D004465 8.5e-52 207.2 140 73.6
Sp1g39500 Schrenkiella parvula HOM05D003434 ORTHO05D004465 8.5e-52 207.2 144 74.3
arahy.Tifrunner.gnm1.ann1.L3HXPU Arachis hypogaea HOM05D003434 ORTHO05D004465 1.1e-51 206.8 148 70.9
arahy.Tifrunner.gnm1.ann1.LC97RS Arachis hypogaea HOM05D003434 ORTHO05D004465 1.1e-51 206.8 148 70.9
FAN16G2559 Fragaria x ananassa HOM05D003434 ORTHO05D004465 1.1e-51 206.8 142 73.2
Aa31LG8G2690 Aethionema arabicum HOM05D003434 ORTHO05D004465 1.5e-51 206.5 142 73.9
CiPaw.11G173200 Carya illinoinensis HOM05D003434 ORTHO05D004465 1.5e-51 206.5 142 73.9
FAN21G0310 Fragaria x ananassa HOM05D003434 ORTHO05D004465 1.5e-51 206.5 142 72.5
FAN25G0934 Fragaria x ananassa HOM05D003434 ORTHO05D004465 1.5e-51 206.5 142 73.2
HanXRQChr12g0374331 Helianthus annuus HOM05D003434 ORTHO05D004465 1.5e-51 206.5 142 71.1
ECA236G4345 Erigeron canadensis HOM05D003434 ORTHO05D004465 1.9e-51 206.1 142 72.5
Lsat_1_v5_gn_7_105060 Lactuca sativa HOM05D003434 ORTHO05D004465 1.9e-51 206.1 143 72.0
Lalb_Chr17g0340551 Lupinus albus HOM05D003434 ORTHO05D004465 1.9e-51 206.1 146 71.2
Ca_13044_v3 Cicer arietinum L. HOM05D003434 ORTHO05D004465 3.2e-51 205.3 144 72.9
FvH4_3g20570 Fragaria vesca HOM05D003434 ORTHO05D004465 3.2e-51 205.3 142 73.2
FAN11G3195 Fragaria x ananassa HOM05D003434 ORTHO05D004465 3.2e-51 205.3 142 73.2
Phvul.008G022900 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 3.2e-51 205.3 147 72.1
Ciclev10008977m.g Citrus clementina HOM05D003434 ORTHO05D004465 4.2e-51 204.9 144 75.7
BcaB06g29579 Brassica carinata HOM05D003434 ORTHO05D004465 5.5e-51 204.5 144 73.6
A05p33960 Brassica napus HOM05D003434 ORTHO05D004465 5.5e-51 204.5 145 73.1
BraA05t22218Z Brassica rapa HOM05D003434 ORTHO05D004465 5.5e-51 204.5 145 73.1
Manes.12G076100 Manihot esculenta HOM05D003434 ORTHO05D004465 5.5e-51 204.5 142 72.5
Carub.0001s4208 Capsella rubella HOM05D003434 ORTHO05D004465 1.6e-50 203.0 144 71.5
QL08p019759 Quercus lobata HOM05D003434 ORTHO05D004465 1.6e-50 203.0 142 71.1
Ah.01g001850 Amaranthus hybridus HOM05D003434 ORTHO05D004465 2.7e-50 202.2 146 71.9
CARHR043150 Cardamine hirsuta HOM05D003434 ORTHO05D004465 3.6e-50 201.8 144 71.5
Lalb_Chr04g0258261 Lupinus albus HOM05D003434 ORTHO05D004465 3.6e-50 201.8 143 71.3
PGR083G2248 Punica granatum HOM05D003434 ORTHO05D004465 3.6e-50 201.8 144 71.5
Aa31LG10G2140 Aethionema arabicum HOM05D003434 ORTHO05D004465 4.7e-50 201.4 143 71.3
TAR624G0430 Trochodendron aralioides HOM05D003434 ORTHO05D004465 4.7e-50 201.4 142 71.1
TAR626G1243 Trochodendron aralioides HOM05D003434 ORTHO05D004465 4.7e-50 201.4 142 70.4
vmacro11838 Vaccinium macrocarpon HOM05D003434 ORTHO05D004465 4.7e-50 201.4 140 71.4
Phvul.001G137800 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 8.0e-50 200.7 147 70.1
Phvul.001G138125 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 8.0e-50 200.7 147 70.1
VMungo1383G3569 Vigna mungo HOM05D003434 ORTHO05D004465 8.0e-50 200.7 145 72.4
Lj1g0009928 Lotus japonicus HOM05D003434 ORTHO05D004465 1.4e-49 199.9 146 69.9
Hund24214 Selenicereus undatus HOM05D003434 ORTHO05D004465 1.4e-49 199.9 143 71.3
Prupe.4G185500 Prunus persica HOM05D003434 ORTHO05D004465 1.2e-48 196.8 143 68.5
CAN.G1237.13 Capsicum annuum HOM05D003434 ORTHO05D004465 1.5e-48 196.4 148 68.2
Glyma.02G114000 Glycine max HOM05D003434 ORTHO05D004465 1.5e-48 196.4 143 68.5
Medtr1g012990 Medicago truncatula HOM05D003434 ORTHO05D004465 1.5e-48 196.4 142 73.2
AL1G61260 Arabidopsis lyrata HOM05D003434 ORTHO05D004465 2.0e-48 196.1 144 69.4
Psat6g129960 Pisum sativum HOM05D003434 ORTHO05D004465 2.0e-48 196.1 148 68.9
EL10Ac9g22818 Beta vulgaris HOM05D003434 ORTHO05D004465 2.6e-48 195.7 147 69.4
DCAR_019543 Daucus carota HOM05D003434 ORTHO05D004465 2.6e-48 195.7 142 69.7
Nitab4.5_0000826g0070 Nicotiana tabacum HOM05D003434 ORTHO05D004465 2.6e-48 195.7 142 69.7
Nitab4.5_0001618g0180 Nicotiana tabacum HOM05D003434 ORTHO05D004465 2.6e-48 195.7 142 69.7
Sabra16G0264800 Salix brachista HOM05D003434 ORTHO05D004465 2.6e-48 195.7 174 60.9
Aqoxy4G01062 Aquilegia oxysepala HOM05D003434 ORTHO05D004465 3.4e-48 195.3 144 68.1
Ca_05552_v3 Cicer arietinum L. HOM05D003434 ORTHO05D004465 3.4e-48 195.3 147 68.0
Peaxi162Scf00069g00118 Petunia axillaris HOM05D003434 ORTHO05D004465 3.4e-48 195.3 142 68.3
PSO832G4191 Papaver somniferum HOM05D003434 ORTHO05D004465 4.4e-48 194.9 143 67.8
Cpa.g.sc80.31 Carica papaya HOM05D003434 ORTHO05D004465 5.7e-48 194.5 142 70.4
DCAR_019542 Daucus carota HOM05D003434 ORTHO05D004465 5.7e-48 194.5 141 70.2
Psat6g028560 Pisum sativum HOM05D003434 ORTHO05D004465 5.7e-48 194.5 148 68.2
unitig_0.g2416 Utricularia gibba HOM05D003434 ORTHO05D004465 5.7e-48 194.5 143 69.9
Medtr7g069430 Medicago truncatula HOM05D003434 ORTHO05D004465 7.5e-48 194.1 140 71.4
PSO017G4384 Papaver somniferum HOM05D003434 ORTHO05D004465 9.8e-48 193.7 143 67.8
PSO210G2253 Papaver somniferum HOM05D003434 ORTHO05D004465 1.3e-47 193.4 143 67.1
TPR.G27919 Trifolium pratense HOM05D003434 ORTHO05D004465 1.3e-47 193.4 152 68.4
MD11G1241800 Malus domestica HOM05D003434 ORTHO05D004465 1.7e-47 193.0 143 67.8
SGA_v2.0_scaffold9G04937 Striga asiatica HOM05D003434 ORTHO05D004465 1.7e-47 193.0 141 68.8
Dinv08315 Davidia involucrata HOM05D003434 ORTHO05D002822 2.2e-47 192.6 123 76.4
MD03G1224000 Malus domestica HOM05D003434 ORTHO05D004465 2.2e-47 192.6 142 67.6
Peaxi162Scf00130g00826 Petunia axillaris HOM05D003434 ORTHO05D004465 2.2e-47 192.6 143 71.3
Oeu011677.2 Olea europaea HOM05D003434 ORTHO05D004465 2.8e-47 192.2 161 62.7
Oeu019344.1 Olea europaea HOM05D003434 ORTHO05D004465 3.7e-47 191.8 155 63.2
PSO170G0766 Papaver somniferum HOM05D003434 ORTHO05D004465 4.8e-47 191.4 142 69.0
Solyc04g016380.3 Solanum lycopersicum HOM05D003434 ORTHO05D004465 4.8e-47 191.4 142 69.0
Eucgr.F01099 Eucalyptus grandis HOM05D003434 ORTHO05D004465 1.1e-46 190.3 145 68.3
Nn1g07032 Nelumbo nucifera HOM05D003434 ORTHO05D004465 1.1e-46 190.3 142 69.0
Migut.H01924 Erythranthe guttata HOM05D003434 ORTHO05D004465 1.4e-46 189.9 143 65.7
MBI01_g15748_MAGBIO Magnolia biondii HOM05D003434 ORTHO05D004465 1.4e-46 189.9 148 65.5
PGSC0003DMG400012714 Solanum tuberosum HOM05D003434 ORTHO05D004465 1.4e-46 189.9 142 69.0
Sopen04g008470 Solanum pennellii HOM05D003434 ORTHO05D004465 4.1e-46 188.3 141 68.8
AT1G52930 Arabidopsis thaliana HOM05D003434 ORTHO05D004465 7.0e-46 187.6 144 66.0
SalBow4G3038 Salvia bowleyana HOM05D003434 ORTHO05D004465 7.0e-46 187.6 142 65.5
CDE04G2432 Ceratophyllum demersum HOM05D003434 ORTHO05D004465 1.6e-45 186.4 142 66.9
Nitab4.5_0000677g0140 Nicotiana tabacum HOM05D003434 ORTHO05D004465 1.6e-45 186.4 186 54.8
SalBow6G7052 Salvia bowleyana HOM05D003434 ORTHO05D004465 2.0e-45 186.0 141 66.0
HPP92_020071 Vanilla planifolia HOM05D003434 ORTHO05D004465 3.8e-44 181.8 142 65.5
ATR0605G144 Amborella trichopoda HOM05D003434 ORTHO05D004465 8.6e-44 180.6 142 65.5
AUR62015117 Chenopodium quinoa HOM05D003434 ORTHO05D004465 1.2e-42 176.8 124 71.8
Hma1.2p1_0400F.1_g144660 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 6.8e-41 171.0 142 63.4
Os02g0591800 Oryza sativa ssp. japonica HOM05D003434 ORTHO05D004465 3.4e-40 168.7 155 57.4
Gohir.A04G028400 Gossypium hirsutum HOM05D003434 ORTHO05D004465 3.7e-39 165.2 144 60.4
Zm00001eb245760 Zea mays HOM05D003434 ORTHO05D004465 3.7e-39 165.2 147 57.8
AUR62017579 Chenopodium quinoa HOM05D003434 ORTHO05D004465 6.3e-39 164.5 117 70.1
Actinidia09989 Actinidia chinensis HOM05D003434 ORTHO05D004465 2.4e-38 162.5 92 82.6
Hma1.2p1_0687F.1_g203600 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 2.4e-38 162.5 115 71.3
CDE07G1591 Ceratophyllum demersum HOM05D003434 ORTHO05D004465 4.1e-38 161.8 103 74.8
DCAR_020982 Daucus carota HOM05D003434 ORTHO05D004465 6.6e-36 154.5 142 57.7
BcaC09g48510 Brassica carinata HOM05D003434 ORTHO05D004465 3.3e-35 152.1 144 58.3
Hund31009 Selenicereus undatus HOM05D003434 ORTHO05D023136 4.7e-34 148.3 116 68.1
AagrBONN_evm.TU.Sc2ySwM_344.2838 Anthoceros agrestis HOM05D003434 ORTHO05D004465 8.0e-34 147.5 150 54.0
Hund24220 Selenicereus undatus HOM05D003434 ORTHO05D004465 1.2e-32 143.7 116 66.4
Hund24225 Selenicereus undatus HOM05D003434 ORTHO05D023136 1.3e-31 140.2 113 66.4
SMO353G0304 Selaginella moellendorffii HOM05D003434 ORTHO05D004465 1.9e-30 136.3 123 53.7
Pp3c16_10600 Physcomitrium patens HOM05D003434 ORTHO05D004465 2.4e-30 136.0 152 50.0
Mapoly0044s0007 Marchantia polymorpha HOM05D003434 ORTHO05D004465 3.2e-30 135.6 142 52.1
TPR.G685 Trifolium pratense HOM05D003434 ORTHO05D004465 1.2e-29 133.7 76 81.6
SEGI_35123 Sequoiadendron giganteum HOM05D003434 ORTHO05D004465 1.3e-28 130.2 119 54.6
Phvul.001G137900 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 1.9e-27 126.3 70 84.3
BraA01t03909Z Brassica rapa HOM05D003434 ORTHO05D004465 4.3e-27 125.2 70 84.3
Psat3g183280 Pisum sativum HOM05D003434 ORTHO05D004465 6.2e-26 121.3 69 81.2
CBR_g29800 Chara braunii HOM05D003434 ORTHO05D004465 2.7e-21 105.9 91 54.9
Zm00001eb183430 Zea mays HOM05D003434 ORTHO05D004465 1.0e-20 104.0 70 68.6
Cre02.g095400 Chlamydomonas reinhardtii HOM05D003434 ORTHO05D004465 1.1e-19 100.5 99 52.5
MCO15G262 Micromonas commoda HOM05D003434 ORTHO05D004465 1.4e-17 93.6 89 46.1
Cfa025477 Carpinus fangiana HOM05D003434 ORTHO05D004465 3.4e-16 89.0 112 44.6
PRCOL_00005895 Prasinoderma coloniale HOM05D003434 ORTHO05D004465 6.0e-13 78.2 66 57.6
TPR.G38897 Trifolium pratense HOM05D003434 ORTHO05D004465 6.6e-12 74.7 102 47.1
Prupe.6G064500 Prunus persica HOM05D003434 ORTHO05D334372 6.2e-10 68.2 67 53.7
Haze_26676 Corylus avellana HOM05D003434 ORTHO05D004465 4.0e-09 65.5 86 39.5
TAR627G0311 Trochodendron aralioides HOM05D003434 ORTHO05D415141 6.4e-07 58.2 60 55.0
SEGI_09483 Sequoiadendron giganteum HOM05D003434 ORTHO05D004465 7.1e-06 54.7 27 85.2


User provided reference genes

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