Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G036630 Cucumis sativus L. HOM05D002034 ORTHO05D006399 6.1e-167 591.3 431 100.0
MELO3C020506.2 Cucumis melo HOM05D002034 ORTHO05D006399 1.1e-152 543.9 392 93.1
ClCG03G000290 Citrullus lanatus HOM05D002034 ORTHO05D006399 4.1e-147 525.4 379 90.2
Sed0020719 Sechium edule HOM05D002034 ORTHO05D006399 1.6e-119 433.7 379 76.0
Sed0021639 Sechium edule HOM05D002034 ORTHO05D006399 9.0e-118 427.9 391 75.4
VMungo0647G1676 Vigna mungo HOM05D002034 ORTHO05D006399 3.2e-91 339.7 380 61.3
Phvul.008G257600 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 4.6e-90 335.9 381 59.3
Actinidia34475 Actinidia chinensis HOM05D002034 ORTHO05D006399 8.7e-89 331.6 383 57.4
Glyma.14G197700 Glycine max HOM05D002034 ORTHO05D006399 1.5e-88 330.9 383 59.3
Potri.001G281300 Populus trichocarpa HOM05D002034 ORTHO05D006399 1.9e-88 330.5 396 57.8
Glyma.02G230600 Glycine max HOM05D002034 ORTHO05D006399 2.2e-87 327.0 384 58.6
Potri.009G076600 Populus trichocarpa HOM05D002034 ORTHO05D006399 6.3e-87 325.5 381 58.3
Duzib170G0382 Durio zibethinus HOM05D002034 ORTHO05D006399 2.4e-86 323.6 393 57.0
Psat5g153880 Pisum sativum HOM05D002034 ORTHO05D006399 1.5e-85 320.9 386 56.2
Sabra16G0175000 Salix brachista HOM05D002034 ORTHO05D006399 2.2e-84 317.0 404 59.4
Nitab4.5_0004174g0030 Nicotiana tabacum HOM05D002034 ORTHO05D006399 3.8e-84 316.2 387 55.0
Manes.18G141005 Manihot esculenta HOM05D002034 ORTHO05D006399 5.0e-84 315.8 383 58.2
Hma1.2p1_0841F.1_g226910 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 1.9e-83 313.9 337 59.9
Lalb_Chr17g0345341 Lupinus albus HOM05D002034 ORTHO05D006399 1.9e-83 313.9 386 59.3
QL01p039969 Quercus lobata HOM05D002034 ORTHO05D006399 3.2e-83 313.2 382 61.5
vmacro14615 Vaccinium macrocarpon HOM05D002034 ORTHO05D006399 3.2e-83 313.2 385 61.8
Nitab4.5_0006148g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 5.5e-83 312.4 379 58.6
CAN.G741.43 Capsicum annuum HOM05D002034 ORTHO05D006399 9.4e-83 311.6 381 53.0
Nitab4.5_0004155g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 1.2e-82 311.2 379 57.8
Nitab4.5_0000967g0020 Nicotiana tabacum HOM05D002034 ORTHO05D006399 1.6e-82 310.8 378 55.3
Thecc.09G355700 Theobroma cacao HOM05D002034 ORTHO05D006399 2.1e-82 310.5 404 54.2
Hund18957 Selenicereus undatus HOM05D002034 ORTHO05D006399 1.0e-81 308.1 391 53.7
Cfa011758 Carpinus fangiana HOM05D002034 ORTHO05D006399 1.4e-81 307.8 380 62.1
Actinidia23869 Actinidia chinensis HOM05D002034 ORTHO05D006399 3.0e-81 306.6 387 50.4
Hma1.2p1_0146F.1_g065460 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 3.9e-81 306.2 383 59.8
Dinv28685 Davidia involucrata HOM05D002034 ORTHO05D006399 6.7e-81 305.4 381 62.5
Manes.02G216300 Manihot esculenta HOM05D002034 ORTHO05D006399 6.7e-81 305.4 387 54.3
EL10Ac7g15904 Beta vulgaris HOM05D002034 ORTHO05D006399 8.8e-81 305.1 386 56.0
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 1.5e-80 304.3 386 50.8
Medtr3g031740 Medicago truncatula HOM05D002034 ORTHO05D006399 1.5e-80 304.3 386 59.3
C03p14310 Brassica napus HOM05D002034 ORTHO05D006399 1.7e-79 300.8 382 52.9
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 3.7e-79 299.7 378 51.1
Lj6g0014994 Lotus japonicus HOM05D002034 ORTHO05D006399 1.8e-78 297.4 386 58.3
TWI79G0783 Tripterygium wilfordii HOM05D002034 ORTHO05D006399 1.8e-78 297.4 386 56.0
Sopen06g033600 Solanum pennellii HOM05D002034 ORTHO05D006399 2.4e-78 297.0 380 57.6
PGSC0003DMG400030374 Solanum tuberosum HOM05D002034 ORTHO05D006399 3.1e-78 296.6 378 59.3
Glyma.11G165000 Glycine max HOM05D002034 ORTHO05D006399 6.9e-78 295.4 391 59.6
Phvul.006G072900 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 9.1e-78 295.0 410 54.1
AL8G34690 Arabidopsis lyrata HOM05D002034 ORTHO05D006399 2.0e-77 293.9 393 49.6
Carub.0008s1906 Capsella rubella HOM05D002034 ORTHO05D006399 1.0e-76 291.6 388 50.5
C02p13300 Brassica napus HOM05D002034 ORTHO05D006399 1.3e-76 291.2 384 54.9
CARHR272300 Cardamine hirsuta HOM05D002034 ORTHO05D006399 1.7e-76 290.8 383 55.1
Duzib168G0356 Durio zibethinus HOM05D002034 ORTHO05D006399 1.7e-76 290.8 388 59.8
BcaC03g14089 Brassica carinata HOM05D002034 ORTHO05D006399 5.0e-76 289.3 382 55.0
Prupe.6G050700 Prunus persica HOM05D002034 ORTHO05D006399 5.0e-76 289.3 396 54.3
Nn2g13237 Nelumbo nucifera HOM05D002034 ORTHO05D006399 6.5e-76 288.9 380 55.3
BolC2t07445H Brassica oleracea HOM05D002034 ORTHO05D006399 8.5e-76 288.5 384 54.7
C09p50360 Brassica napus HOM05D002034 ORTHO05D006399 1.1e-75 288.1 377 51.2
Dinv09661 Davidia involucrata HOM05D002034 ORTHO05D006399 2.5e-75 287.0 379 56.7
unitig_26.g10217 Utricularia gibba HOM05D002034 ORTHO05D006399 2.5e-75 287.0 379 52.5
CiPaw.14G055200 Carya illinoinensis HOM05D002034 ORTHO05D006399 9.4e-75 285.0 380 59.2
Aa31LG11G250 Aethionema arabicum HOM05D002034 ORTHO05D006399 1.6e-74 284.3 383 55.6
Sabra09G0058400 Salix brachista HOM05D002034 ORTHO05D006399 1.6e-74 284.3 352 62.2
BraA02t05843Z Brassica rapa HOM05D002034 ORTHO05D006399 2.7e-74 283.5 380 52.6
AT5G58470 Arabidopsis thaliana HOM05D002034 ORTHO05D006399 3.0e-73 280.0 394 54.6
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 3.0e-73 280.0 378 52.9
Peaxi162Scf00390g00821 Petunia axillaris HOM05D002034 ORTHO05D006399 3.0e-73 280.0 378 58.5
Gohir.A03G026400 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.1e-72 278.1 387 54.3
BcaB05g22434 Brassica carinata HOM05D002034 ORTHO05D006399 1.5e-72 277.7 390 57.7
Oeu053356.2 Olea europaea HOM05D002034 ORTHO05D006399 2.0e-72 277.3 378 55.0
BraA10t43645Z Brassica rapa HOM05D002034 ORTHO05D006399 3.3e-72 276.6 376 52.7
Gohir.A03G026200 Gossypium hirsutum HOM05D002034 ORTHO05D006399 3.3e-72 276.6 387 55.8
MD03G1060300 Malus domestica HOM05D002034 ORTHO05D006399 5.7e-72 275.8 389 61.2
TAR633G1742 Trochodendron aralioides HOM05D002034 ORTHO05D006399 7.4e-72 275.4 401 52.6
CDE04G0201 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 3.7e-71 273.1 287 56.8
Gorai.009G112700 Gossypium raimondii HOM05D002034 ORTHO05D006399 3.7e-71 273.1 377 56.0
Zm00001eb123460 Zea mays HOM05D002034 ORTHO05D006399 4.8e-71 272.7 408 59.8
Glyma.18G058200 Glycine max HOM05D002034 ORTHO05D006399 6.3e-71 272.3 406 54.9
TAR623G0025 Trochodendron aralioides HOM05D002034 ORTHO05D006399 6.3e-71 272.3 379 62.3
Lalb_Chr10g0103541 Lupinus albus HOM05D002034 ORTHO05D006399 1.1e-70 271.6 382 58.1
Lj1C128G5 Lonicera japonica HOM05D002034 ORTHO05D006399 1.8e-70 270.8 370 54.9
Sp6g20160 Schrenkiella parvula HOM05D002034 ORTHO05D006399 1.8e-70 270.8 377 52.3
Thhalv10012621m.g Eutrema salsugineum HOM05D000417 ORTHO05D000342 3.1e-70 270.0 390 51.8
Oeu064670.1 Olea europaea HOM05D002034 ORTHO05D006399 3.1e-70 270.0 381 54.3
HPP92_003242 Vanilla planifolia HOM05D002034 ORTHO05D006399 3.1e-70 270.0 417 49.4
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 1.2e-69 268.1 382 50.5
Gohir.D05G108500 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.5e-69 267.7 379 55.4
BolC9t57892H Brassica oleracea HOM05D002034 ORTHO05D006399 3.5e-69 266.5 371 52.3
Lalb_Chr04g0252031 Lupinus albus HOM05D002034 ORTHO05D006399 3.5e-69 266.5 382 57.6
arahy.Tifrunner.gnm1.ann1.99AA0S Arachis hypogaea HOM05D002034 ORTHO05D006399 4.5e-69 266.2 384 59.6
FAN21G0003 Fragaria x ananassa HOM05D002034 ORTHO05D006399 4.5e-69 266.2 405 53.6
Cc01_g14710 Coffea canephora HOM05D000417 ORTHO05D000342 7.7e-69 265.4 378 53.7
Lsat_1_v5_gn_5_174460 Lactuca sativa HOM05D000417 ORTHO05D000342 1.3e-68 264.6 384 59.6
CDE06G0527 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 3.8e-68 263.1 370 49.7
ECA248G0185 Erigeron canadensis HOM05D002034 ORTHO05D006399 6.5e-68 262.3 393 59.0
MBI05_g02399_MAGBIO Magnolia biondii HOM05D002034 ORTHO05D006399 8.5e-68 261.9 361 52.9
Zm00001eb336220 Zea mays HOM05D002034 ORTHO05D006399 1.1e-67 261.5 411 58.6
RcHm_v2.0_Chr5g0071281 Rosa chinensis HOM05D002034 ORTHO05D006399 1.5e-67 261.2 394 54.8
ATR0174G006 Amborella trichopoda HOM05D002034 ORTHO05D006399 2.5e-67 260.4 413 47.9
VMungo0540G2394 Vigna mungo HOM05D002034 ORTHO05D006399 2.5e-67 260.4 405 54.8
arahy.Tifrunner.gnm1.ann1.60GRLQ Arachis hypogaea HOM05D002034 ORTHO05D006399 5.5e-67 259.2 385 51.2
arahy.Tifrunner.gnm1.ann1.S7G6UF Arachis hypogaea HOM05D002034 ORTHO05D006399 1.2e-66 258.1 414 48.1
Lj2A1091G43 Lonicera japonica HOM05D002034 ORTHO05D006399 1.2e-66 258.1 430 52.3
BcaB08g36182 Brassica carinata HOM05D002034 ORTHO05D006399 4.7e-66 256.1 334 53.3
Migut.N00767 Erythranthe guttata HOM05D002034 ORTHO05D006399 8.0e-66 255.4 388 57.0
A02p07680 Brassica napus HOM05D002034 ORTHO05D006399 8.8e-65 251.9 396 56.1
Ca_05091_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 4.4e-64 249.6 380 54.5
Ca_14994_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 4.4e-64 249.6 380 54.5
Atru.chr3.4131 Acer truncatum HOM05D002034 ORTHO05D006399 7.4e-64 248.8 359 56.3
MD11G1063400 Malus domestica HOM05D002034 ORTHO05D006399 1.3e-63 248.1 389 56.3
SGA_v2.0_scaffold104G30143 Striga asiatica HOM05D002034 ORTHO05D006399 3.7e-63 246.5 408 53.2
HPP92_025110 Vanilla planifolia HOM05D002034 ORTHO05D006399 6.3e-63 245.7 389 43.4
Solyc06g082220.4 Solanum lycopersicum HOM05D002034 ORTHO05D006399 1.1e-62 245.0 281 57.3
SHI19198 Sapria himalayana HOM05D002034 ORTHO05D006399 1.8e-62 244.2 387 46.8
FvH4_3g39510 Fragaria vesca HOM05D002034 ORTHO05D006399 4.1e-62 243.0 388 56.7
Cpa.g.sc2.376 Carica papaya HOM05D002034 ORTHO05D006399 5.3e-62 242.7 241 63.5
Aqoxy1G01307 Aquilegia oxysepala HOM05D002034 ORTHO05D006399 7.0e-62 242.3 379 52.5
Os01g0164400 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D006399 7.0e-62 242.3 170 70.6
FAN11G3559 Fragaria x ananassa HOM05D002034 ORTHO05D006399 9.1e-62 241.9 384 56.5
Ah.08g215230 Amaranthus hybridus HOM05D002034 ORTHO05D006399 1.2e-61 241.5 356 55.6
FAN16G2984 Fragaria x ananassa HOM05D002034 ORTHO05D006399 1.2e-61 241.5 388 55.9
Haze_24395 Corylus avellana HOM05D002034 ORTHO05D006399 8.5e-60 235.3 163 70.6
DCAR_007354 Daucus carota HOM05D002034 ORTHO05D006399 8.5e-60 235.3 383 51.7
SEGI_19079 Sequoiadendron giganteum HOM05D002034 ORTHO05D006399 4.2e-59 233.0 345 53.9
Gohir.D03G142300 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.6e-58 231.1 387 53.0
Gorai.003G149400 Gossypium raimondii HOM05D002034 ORTHO05D006399 1.6e-58 231.1 387 53.0
FAN25G3394 Fragaria x ananassa HOM05D000417 ORTHO05D000342 5.7e-56 222.6 382 55.5
Hma1.2p1_2630F.1_g325730 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 5.7e-56 222.6 264 55.3
Gohir.D03G142100 Gossypium hirsutum HOM05D002034 ORTHO05D006399 9.8e-56 221.9 387 49.4
CSS0028239 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 1.3e-55 221.5 352 54.3
Gorai.003G149100 Gossypium raimondii HOM05D002034 ORTHO05D006399 1.3e-55 221.5 388 49.7
CSS0049450 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 2.4e-54 217.2 368 47.3
CSS0042328 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 9.1e-54 215.3 406 53.2
Gohir.A05G108332 Gossypium hirsutum HOM05D002034 ORTHO05D006399 9.1e-54 215.3 344 48.3
AUR62009684 Chenopodium quinoa HOM05D002034 ORTHO05D006399 6.5e-52 209.1 280 47.1
AUR62001888 Chenopodium quinoa HOM05D002034 ORTHO05D006399 1.2e-48 198.4 232 50.0
AagrBONN_evm.TU.Sc2ySwM_344.1306 Anthoceros agrestis HOM05D002034 ORTHO05D006399 1.6e-45 188.0 165 59.4
Mapoly0074s0009 Marchantia polymorpha HOM05D002034 ORTHO05D006399 5.9e-45 186.0 160 63.1
COL.COLO4_11127 Corchorus olitorius HOM05D002034 ORTHO05D006399 2.3e-44 184.1 196 54.1
CBR_g17146 Chara braunii HOM05D002034 ORTHO05D006399 4.2e-43 179.9 311 40.5
Pp3c17_1620 Physcomitrium patens HOM05D002034 ORTHO05D006399 7.2e-43 179.1 179 58.7
SMO358G0702 Selaginella moellendorffii HOM05D002034 ORTHO05D006399 6.1e-42 176.0 122 64.8
Ciclev10027796m.g Citrus clementina HOM05D000417 ORTHO05D000342 4.4e-40 169.9 271 52.8
Pp3c12_3430 Physcomitrium patens HOM05D002034 ORTHO05D006399 1.7e-39 167.9 376 41.8
BolC9t57305H Brassica oleracea HOM05D002034 ORTHO05D006399 2.0e-37 161.0 317 48.3
BolC3t13875H Brassica oleracea HOM05D002034 ORTHO05D006399 8.6e-36 155.6 270 42.2
Actinidia23208 Actinidia chinensis HOM05D002034 ORTHO05D006399 4.7e-34 149.8 101 75.2
BcaC01g04152 Brassica carinata HOM05D002034 ORTHO05D006399 7.5e-32 142.5 308 38.6
C02p38030 Brassica napus HOM05D002034 ORTHO05D006399 3.3e-27 127.1 301 35.2
Sc21g0005190 Simmondsia chinensis HOM05D002034 ORTHO05D006399 4.7e-26 123.2 272 41.5
A09p54750 Brassica napus HOM05D002034 ORTHO05D006399 2.6e-24 117.5 188 47.9
BolC9t53947H Brassica oleracea HOM05D002034 ORTHO05D006399 1.7e-23 114.8 99 59.6
C09p44360 Brassica napus HOM05D002034 ORTHO05D006399 3.0e-20 104.0 250 42.4
MCO15G578 Micromonas commoda HOM05D002034 ORTHO05D000124 1.9e-19 101.3 92 47.8
C04p55240 Brassica napus HOM05D002034 ORTHO05D006399 1.7e-15 88.2 164 37.8
C02p11700 Brassica napus HOM05D002034 ORTHO05D006399 4.9e-15 86.7 301 31.2
Nn1g04222 Nelumbo nucifera HOM05D002034 ORTHO05D006399 1.5e-11 75.1 141 55.3
Lsat_1_v5_gn_3_32780 Lactuca sativa HOM05D005264 ORTHO05D005428 8.1e-10 69.3 93 44.1
vmacro16010 Vaccinium macrocarpon HOM05D005264 ORTHO05D005428 8.1e-10 69.3 95 42.1
AagrBONN_evm.TU.Sc2ySwM_344.985 Anthoceros agrestis HOM05D005264 ORTHO05D005428 6.8e-09 66.2 92 46.7
SalBow1G6014 Salvia bowleyana HOM05D005264 ORTHO05D005428 8.9e-09 65.9 93 43.0
CBR_g224 Chara braunii HOM05D005264 ORTHO05D005428 1.2e-08 65.5 51 52.9
DCAR_002562 Daucus carota HOM05D005264 ORTHO05D005428 1.5e-08 65.1 93 41.9
Os09g0299500 Oryza sativa ssp. japonica HOM05D005264 ORTHO05D005428 1.5e-08 65.1 93 41.9
Potri.010G170700 Populus trichocarpa HOM05D005264 ORTHO05D005428 2.0e-08 64.7 96 41.7
Sabra10G0130200 Salix brachista HOM05D005264 ORTHO05D005428 3.4e-08 63.9 104 41.3
ClCG10G015380 Citrullus lanatus HOM05D005264 ORTHO05D005428 1.7e-07 61.6 96 40.6
MCO15G549 Micromonas commoda HOM05D005264 ORTHO05D005428 2.9e-07 60.8 39 61.5
TAR622G0680 Trochodendron aralioides HOM05D005264 ORTHO05D005428 2.9e-07 60.8 100 37.0
Cfa008720 Carpinus fangiana HOM05D005264 ORTHO05D001742 4.9e-07 60.1 139 34.5
AUR62017649 Chenopodium quinoa HOM05D005264 ORTHO05D005428 4.9e-07 60.1 93 39.8
arahy.Tifrunner.gnm1.ann1.6SGT2N Arachis hypogaea HOM05D005264 ORTHO05D005428 1.1e-06 58.9 135 36.3
CANSAT02G0006 Cannabis sativa HOM05D005514 ORTHO05D006563 1.1e-06 58.9 40 67.5
Gohir.D08G167332 Gossypium hirsutum HOM05D005264 ORTHO05D005428 1.1e-06 58.9 99 38.4
CBR_g44542 Chara braunii HOM05D005514 ORTHO05D006563 1.4e-06 58.5 31 67.7
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 1.9e-06 58.2 34 67.6
PGR142G0147 Punica granatum HOM05D005264 ORTHO05D005428 3.2e-06 57.4 106 36.8
EL10Ac9g22906 Beta vulgaris HOM05D005264 ORTHO05D005428 4.2e-06 57.0 138 33.3
Zm00001eb104370 Zea mays HOM05D005264 ORTHO05D005428 4.2e-06 57.0 34 64.7
Zm00001eb320850 Zea mays HOM05D005264 ORTHO05D005428 4.2e-06 57.0 34 64.7
PSO063G3914 Papaver somniferum HOM05D005264 ORTHO05D005428 5.4e-06 56.6 38 60.5
PSO782G4655 Papaver somniferum HOM05D005264 ORTHO05D005428 5.4e-06 56.6 38 60.5
COL.COLO4_16614 Corchorus olitorius HOM05D005264 ORTHO05D005428 7.1e-06 56.2 35 60.0
FvH4_4g36691 Fragaria vesca HOM05D005264 ORTHO05D005428 7.1e-06 56.2 35 62.9
Medtr6g087890 Medicago truncatula HOM05D005514 ORTHO05D006563 7.1e-06 56.2 50 50.0
RcHm_v2.0_Chr4g0446411 Rosa chinensis HOM05D005264 ORTHO05D005428 7.1e-06 56.2 35 62.9
SEGI_18875 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 7.1e-06 56.2 29 72.4
Cpa.g.sc393.4 Carica papaya HOM05D005264 ORTHO05D005428 9.3e-06 55.8 35 60.0
Os07g0296200 Oryza sativa ssp. japonica HOM05D005264 ORTHO05D005428 9.3e-06 55.8 38 60.5
PSO566G0157 Papaver somniferum HOM05D005514 ORTHO05D006563 9.3e-06 55.8 26 76.9
PSO782G4531 Papaver somniferum HOM05D005514 ORTHO05D006563 9.3e-06 55.8 26 76.9


User provided reference genes

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