Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre15.g636650 Chlamydomonas reinhardtii HOM05D004664 ORTHO05D005526 0.0e+00 1405.2 1385 100.0
Pp3c2_3010 Physcomitrium patens HOM05D004664 ORTHO05D005526 1.6e-11 76.6 122 36.1
CARHR028060 Cardamine hirsuta HOM05D004664 ORTHO05D005526 2.1e-11 76.3 105 38.1
CSS0003336 Camellia sinensis var. sinensis HOM05D004664 ORTHO05D005526 3.6e-11 75.5 122 34.4
AUR62028851 Chenopodium quinoa HOM05D004664 ORTHO05D005526 1.8e-10 73.2 121 33.9
Oeu016938.2 Olea europaea HOM05D004664 ORTHO05D005526 4.0e-10 72.0 122 35.2
Thhalv10008005m.g Eutrema salsugineum HOM05D004664 ORTHO05D005526 8.9e-10 70.9 123 35.8
AL1G42190 Arabidopsis lyrata HOM05D004664 ORTHO05D005526 2.6e-09 69.3 105 35.2
Migut.H01639 Erythranthe guttata HOM05D004664 ORTHO05D005526 3.4e-09 68.9 122 33.6
AUR62005705 Chenopodium quinoa HOM05D004664 ORTHO05D005526 4.4e-09 68.6 103 35.0
SGA_v2.0_scaffold239G43984 Striga asiatica HOM05D004664 ORTHO05D005526 5.8e-09 68.2 104 36.5
Lj6A128T19 Lonicera japonica HOM05D004664 ORTHO05D005526 7.6e-09 67.8 104 36.5
Sc25g0005660 Simmondsia chinensis HOM05D004664 ORTHO05D005526 7.6e-09 67.8 121 35.5
TWI63G0464 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 9.9e-09 67.4 121 33.1
Cc07_g14650 Coffea canephora HOM05D004664 ORTHO05D005526 1.3e-08 67.0 122 36.1
GSVIVG01002826001 Vitis vinifera HOM05D004664 ORTHO05D005526 1.3e-08 67.0 125 33.6
GSVIVG01004332001 Vitis vinifera HOM05D004664 ORTHO05D005526 1.3e-08 67.0 125 33.6
AT1G28560 Arabidopsis thaliana HOM05D004664 ORTHO05D005526 1.7e-08 66.6 105 33.3
HanXRQChr15g0489541 Helianthus annuus HOM05D004664 ORTHO05D005526 1.7e-08 66.6 104 35.6
THA.LOC104809221 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 2.2e-08 66.2 105 32.4
Carub.0004s0328 Capsella rubella HOM05D004664 ORTHO05D005526 2.9e-08 65.9 105 32.4
Lalb_Chr04g0264741 Lupinus albus HOM05D004664 ORTHO05D005526 3.8e-08 65.5 103 35.0
Mapoly0028s0050 Marchantia polymorpha HOM05D004664 ORTHO05D005526 3.8e-08 65.5 122 32.8
Psat0s2550g0080 Pisum sativum HOM05D004664 ORTHO05D005526 3.8e-08 65.5 122 32.8
Manes.08G015000 Manihot esculenta HOM05D004664 ORTHO05D005526 4.9e-08 65.1 103 34.0
PSO541G3178 Papaver somniferum HOM05D004664 ORTHO05D005526 4.9e-08 65.1 122 31.1
PSO675G1009 Papaver somniferum HOM05D004664 ORTHO05D005526 4.9e-08 65.1 122 31.1
RcHm_v2.0_Chr7g0230211 Rosa chinensis HOM05D004664 ORTHO05D005526 4.9e-08 65.1 121 33.1
SEGI_33972 Sequoiadendron giganteum HOM05D004664 ORTHO05D005526 4.9e-08 65.1 103 33.0
Sopen10g004780 Solanum pennellii HOM05D004664 ORTHO05D005526 4.9e-08 65.1 121 35.5
PGSC0003DMG400022830 Solanum tuberosum HOM05D004664 ORTHO05D005526 4.9e-08 65.1 121 35.5
CANSAT64G2239 Cannabis sativa HOM05D004664 ORTHO05D005526 6.4e-08 64.7 121 32.2
ECA238G0224 Erigeron canadensis HOM05D004664 ORTHO05D005526 6.4e-08 64.7 105 36.2
Hma1.2p1_0277F.1_g111600 Hydrangea macrophylla HOM05D004664 ORTHO05D005526 6.4e-08 64.7 104 34.6
Solyc10g009000.4 Solanum lycopersicum HOM05D004664 ORTHO05D005526 6.4e-08 64.7 121 35.5
TAR633G0600 Trochodendron aralioides HOM05D004664 ORTHO05D005526 6.4e-08 64.7 122 33.6
unitig_22.g5707 Utricularia gibba HOM05D004664 ORTHO05D005526 6.4e-08 64.7 105 38.1
ATR0751G240 Amborella trichopoda HOM05D004664 ORTHO05D005526 8.4e-08 64.3 93 35.5
Dinv01695 Davidia involucrata HOM05D004664 ORTHO05D005526 8.4e-08 64.3 84 36.9
FAN18G2840 Fragaria x ananassa HOM05D004664 ORTHO05D005526 8.4e-08 64.3 105 32.4
TAR636G0408 Trochodendron aralioides HOM05D004664 ORTHO05D005526 8.4e-08 64.3 125 33.6
Carub.0001s2702 Capsella rubella HOM05D004664 ORTHO05D005526 1.1e-07 63.9 105 31.4
FAN02G1202 Fragaria x ananassa HOM05D004664 ORTHO05D005526 1.1e-07 63.9 124 33.1
Haze_07058 Corylus avellana HOM05D004664 ORTHO05D005526 1.4e-07 63.5 105 33.3
Rhsim06G0067400 Rhododendron simsii HOM05D004664 ORTHO05D005526 1.4e-07 63.5 125 32.0
TWI38G1364 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 1.9e-07 63.2 112 33.0
Dinv11048 Davidia involucrata HOM05D004664 ORTHO05D005526 2.4e-07 62.8 103 33.0
Hund19039 Selenicereus undatus HOM05D004664 ORTHO05D005526 2.4e-07 62.8 103 35.0
Cc09_g09390 Coffea canephora HOM05D004664 ORTHO05D005526 3.2e-07 62.4 104 35.6
Nn1g08288 Nelumbo nucifera HOM05D004664 ORTHO05D005526 3.2e-07 62.4 112 33.0
VMungo1215G0123 Vigna mungo HOM05D004664 ORTHO05D005526 3.2e-07 62.4 122 31.1
Medtr1g043000 Medicago truncatula HOM05D004664 ORTHO05D005526 4.1e-07 62.0 91 34.1
TPR.G5994 Trifolium pratense HOM05D004664 ORTHO05D005526 4.1e-07 62.0 93 35.5
arahy.Tifrunner.gnm1.ann1.6YF458 Arachis hypogaea HOM05D004664 ORTHO05D005526 5.4e-07 61.6 105 31.4
arahy.Tifrunner.gnm1.ann1.U25ASJ Arachis hypogaea HOM05D004664 ORTHO05D005526 5.4e-07 61.6 105 31.4
FvH4_6g39210 Fragaria vesca HOM05D004664 ORTHO05D005526 5.4e-07 61.6 103 35.0
FAN05G0490 Fragaria x ananassa HOM05D004664 ORTHO05D005526 5.4e-07 61.6 103 35.0
FAN14G0080 Fragaria x ananassa HOM05D004664 ORTHO05D005526 5.4e-07 61.6 103 35.0
Phvul.003G154500 Phaseolus vulgaris HOM05D004664 ORTHO05D005526 5.4e-07 61.6 122 31.1
BcaB03g12095 Brassica carinata HOM05D004664 ORTHO05D005526 7.1e-07 61.2 105 32.4
CAN.G413.16 Capsicum annuum HOM05D004664 ORTHO05D005526 7.1e-07 61.2 104 35.6
CiPaw.09G112800 Carya illinoinensis HOM05D004664 ORTHO05D005526 7.1e-07 61.2 106 33.0
DCAR_031515 Daucus carota HOM05D004664 ORTHO05D005526 7.1e-07 61.2 125 31.2
Medtr4g134340 Medicago truncatula HOM05D004664 ORTHO05D005526 7.1e-07 61.2 91 35.2
Gohir.D05G311400 Gossypium hirsutum HOM05D004664 ORTHO05D005526 9.2e-07 60.8 105 31.4
Gorai.009G332500 Gossypium raimondii HOM05D004664 ORTHO05D005526 9.2e-07 60.8 105 31.4
Nitab4.5_0003942g0040 Nicotiana tabacum HOM05D004664 ORTHO05D005526 9.2e-07 60.8 105 35.2
vmacro21384 Vaccinium macrocarpon HOM05D004664 ORTHO05D005526 9.2e-07 60.8 125 31.2
Sp1g24810 Schrenkiella parvula HOM05D004664 ORTHO05D005526 1.2e-06 60.5 123 31.7
Eucgr.D00971 Eucalyptus grandis HOM05D004664 ORTHO05D005526 1.6e-06 60.1 123 31.7
MCO08G225 Micromonas commoda HOM05D004664 ORTHO05D005526 1.6e-06 60.1 79 41.8
RcHm_v2.0_Chr2g0153021 Rosa chinensis HOM05D004664 ORTHO05D005526 2.1e-06 59.7 103 34.0
BcaC01g00070 Brassica carinata HOM05D004664 ORTHO05D005526 2.7e-06 59.3 123 30.9
C03p75380 Brassica napus HOM05D004664 ORTHO05D005526 2.7e-06 59.3 123 30.9
BolC3t19796H Brassica oleracea HOM05D004664 ORTHO05D005526 2.7e-06 59.3 123 30.9
BraA08t34494Z Brassica rapa HOM05D004664 ORTHO05D005526 2.7e-06 59.3 123 31.7
Glyma.07G270100 Glycine max HOM05D004664 ORTHO05D005526 2.7e-06 59.3 103 33.0
Sp5g19680 Schrenkiella parvula HOM05D004664 ORTHO05D005526 2.7e-06 59.3 123 31.7
Actinidia19274 Actinidia chinensis HOM05D004664 ORTHO05D005526 3.5e-06 58.9 106 32.1
A08p25430 Brassica napus HOM05D004664 ORTHO05D005526 3.5e-06 58.9 123 30.9
Peaxi162Scf00530g00824 Petunia axillaris HOM05D004664 ORTHO05D005526 3.5e-06 58.9 103 34.0
Gohir.A05G310600 Gossypium hirsutum HOM05D004664 ORTHO05D005526 4.6e-06 58.5 84 33.3
Lj1A1166T78 Lonicera japonica HOM05D004664 ORTHO05D005526 4.6e-06 58.5 103 31.1
Os01g0912600 Oryza sativa ssp. japonica HOM05D004664 ORTHO05D005526 4.6e-06 58.5 105 29.5
Sed0026896 Sechium edule HOM05D004664 ORTHO05D005526 4.6e-06 58.5 87 35.6
Prupe.3G183500 Prunus persica HOM05D004664 ORTHO05D005526 6.0e-06 58.2 102 34.3
Aqoxy1G03457 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 7.8e-06 57.8 103 32.0
Ciclev10015263m.g Citrus clementina HOM05D004664 ORTHO05D005526 7.8e-06 57.8 87 33.3
COL.COLO4_20401 Corchorus olitorius HOM05D004664 ORTHO05D005526 7.8e-06 57.8 84 33.3
Duzib268G1219 Durio zibethinus HOM05D004664 ORTHO05D005526 7.8e-06 57.8 102 32.4


User provided reference genes

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