Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 5.0e-208 728.4 675 100.0
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 1.1e-21 109.4 244 32.8
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 1.9e-21 108.6 244 32.8
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 2.5e-21 108.2 244 32.8
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 4.2e-21 107.5 241 32.8
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 5.5e-21 107.1 244 32.4
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 7.2e-21 106.7 217 33.2
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 1.6e-20 105.5 188 35.6
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 2.1e-20 105.1 236 33.9
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 2.7e-20 104.8 196 33.7
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 2.7e-20 104.8 234 32.9
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 6.1e-20 103.6 240 31.7
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 6.1e-20 103.6 224 31.7
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 7.9e-20 103.2 243 31.3
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 7.9e-20 103.2 243 31.3
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 1.0e-19 102.8 194 35.1
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 1.0e-19 102.8 199 33.7
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 1.4e-19 102.4 235 32.3
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 1.4e-19 102.4 199 33.2
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 1.8e-19 102.1 220 33.6
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 2.3e-19 101.7 192 34.4
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 2.3e-19 101.7 199 33.2
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 3.0e-19 101.3 243 30.9
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 3.0e-19 101.3 185 34.1
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 3.9e-19 100.9 234 31.6
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 3.9e-19 100.9 198 33.3
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 5.1e-19 100.5 243 30.9
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 5.1e-19 100.5 197 32.0
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 5.1e-19 100.5 248 31.0
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 6.7e-19 100.1 191 34.6
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 6.7e-19 100.1 198 33.3
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 6.7e-19 100.1 218 33.5
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 8.8e-19 99.8 191 34.6
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 8.8e-19 99.8 192 33.9
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 8.8e-19 99.8 192 33.9
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 8.8e-19 99.8 198 33.3
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 1.1e-18 99.4 199 32.7
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 1.1e-18 99.4 189 33.3
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 1.1e-18 99.4 197 33.0
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 1.5e-18 99.0 240 31.7
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 1.5e-18 99.0 240 31.7
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 1.5e-18 99.0 215 31.2
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 1.9e-18 98.6 197 33.0
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 1.9e-18 98.6 199 32.2
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 1.9e-18 98.6 199 33.2
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 1.9e-18 98.6 199 32.2
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 2.5e-18 98.2 206 32.0
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 2.5e-18 98.2 229 30.1
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 2.5e-18 98.2 229 30.1
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 2.5e-18 98.2 195 32.8
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 3.3e-18 97.8 206 31.6
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 4.3e-18 97.4 192 33.3
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 4.3e-18 97.4 229 30.1
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 4.3e-18 97.4 199 32.7
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 5.7e-18 97.1 200 32.0
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 5.7e-18 97.1 198 31.8
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 7.4e-18 96.7 198 31.3
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 7.4e-18 96.7 198 32.8
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 7.4e-18 96.7 200 32.0
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 7.4e-18 96.7 234 31.6
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 1.3e-17 95.9 199 32.2
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 1.3e-17 95.9 197 31.5
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 1.3e-17 95.9 205 32.7
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 2.2e-17 95.1 213 31.0
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 2.2e-17 95.1 197 31.5
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 2.2e-17 95.1 199 32.2
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 2.2e-17 95.1 196 31.6
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 2.2e-17 95.1 229 29.7
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 2.2e-17 95.1 199 29.6
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 3.7e-17 94.4 198 31.8
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 3.7e-17 94.4 205 32.7
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 3.7e-17 94.4 198 30.8
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 3.7e-17 94.4 199 31.2
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 4.8e-17 94.0 198 30.8
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 4.8e-17 94.0 198 32.8
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 6.3e-17 93.6 201 30.3
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 6.3e-17 93.6 201 30.3
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 8.2e-17 93.2 197 30.5
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 8.2e-17 93.2 197 31.5
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 1.1e-16 92.8 197 31.5
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 1.4e-16 92.4 201 30.3
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 1.4e-16 92.4 191 33.0
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 1.8e-16 92.0 201 29.9
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 1.8e-16 92.0 191 33.0
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 2.4e-16 91.7 204 31.4
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 2.4e-16 91.7 198 31.3
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 3.1e-16 91.3 210 31.0
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 3.1e-16 91.3 198 30.8
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 3.1e-16 91.3 197 32.0
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 4.1e-16 90.9 199 32.2
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 4.1e-16 90.9 191 31.9
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 5.3e-16 90.5 183 32.2
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 5.3e-16 90.5 155 32.9
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 6.9e-16 90.1 203 33.0
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 6.9e-16 90.1 204 29.9
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 9.1e-16 89.7 152 34.2
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 1.2e-15 89.4 196 31.6
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 1.5e-15 89.0 240 28.3
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 2.6e-15 88.2 205 28.8
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 3.4e-15 87.8 167 34.1
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 4.5e-15 87.4 289 27.7
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 5.9e-15 87.0 178 31.5
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 7.7e-15 86.7 208 30.8
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 1.3e-14 85.9 191 31.9
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 1.3e-14 85.9 191 31.9
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 2.2e-14 85.1 191 30.4
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 2.2e-14 85.1 198 31.3
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 3.8e-14 84.3 198 28.8
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 5.0e-14 84.0 155 34.2
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 1.9e-13 82.0 108 37.0
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 2.5e-13 81.6 152 33.6
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 1.6e-12 79.0 152 32.9
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 5.7e-10 70.5 143 33.6
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 7.4e-10 70.1 197 27.4
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 4.1e-08 64.3 99 33.3
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 9.1e-08 63.2 126 32.5
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 9.1e-08 63.2 126 32.5


User provided reference genes

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