Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre13.g589700 Chlamydomonas reinhardtii HOM05D004285 ORTHO05D005176 2.6e-95 352.4 235 100.0
Mapoly0073s0065 Marchantia polymorpha HOM05D004285 ORTHO05D005176 3.4e-34 149.4 189 47.1
SMO232G0091 Selaginella moellendorffii HOM05D004285 ORTHO05D005176 9.8e-34 147.9 177 46.9
AT5G09260 Arabidopsis thaliana HOM05D004285 ORTHO05D005176 1.3e-33 147.5 169 49.7
CANSAT80G1716 Cannabis sativa HOM05D004285 ORTHO05D005176 2.2e-33 146.7 174 48.9
Lj4g0011662 Lotus japonicus HOM05D004285 ORTHO05D005176 4.8e-33 145.6 177 45.8
GSVIVG01029745001 Vitis vinifera HOM05D004285 ORTHO05D005176 4.8e-33 145.6 170 48.2
AL6G19650 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 8.3e-33 144.8 178 49.4
Dinv12984 Davidia involucrata HOM05D004285 ORTHO05D005176 8.3e-33 144.8 168 48.2
TPR.G33552 Trifolium pratense HOM05D004285 ORTHO05D005176 8.3e-33 144.8 179 46.9
TWI79G0936 Tripterygium wilfordii HOM05D004285 ORTHO05D005176 8.3e-33 144.8 176 48.9
Aa31LG1G18000 Aethionema arabicum HOM05D004285 ORTHO05D005176 1.4e-32 144.1 179 46.4
QL10p041258 Quercus lobata HOM05D004285 ORTHO05D005176 1.4e-32 144.1 173 46.2
QL10p041526 Quercus lobata HOM05D004285 ORTHO05D005176 1.4e-32 144.1 173 46.2
Atru.chr4.994 Acer truncatum HOM05D004285 ORTHO05D005176 1.8e-32 143.7 169 49.7
CSS0033426 Camellia sinensis var. sinensis HOM05D004285 ORTHO05D005176 1.8e-32 143.7 169 47.3
Lalb_Chr08g0238191 Lupinus albus HOM05D004285 ORTHO05D005176 1.8e-32 143.7 170 46.5
Psat5g059640 Pisum sativum HOM05D004285 ORTHO05D005176 1.8e-32 143.7 177 45.8
Cc03_g16000 Coffea canephora HOM05D004285 ORTHO05D005176 2.4e-32 143.3 170 47.6
Ca_16982_v3 Cicer arietinum L. HOM05D004285 ORTHO05D005176 3.1e-32 142.9 177 45.8
PGR102G2430 Punica granatum HOM05D004285 ORTHO05D005176 3.1e-32 142.9 179 48.0
TPR.G24222 Trifolium pratense HOM05D004285 ORTHO05D005176 3.1e-32 142.9 175 45.7
BcaC01g02639 Brassica carinata HOM05D004285 ORTHO05D005176 4.1e-32 142.5 180 48.3
C03p62560 Brassica napus HOM05D004285 ORTHO05D005176 4.1e-32 142.5 180 48.3
BolC3t18513H Brassica oleracea HOM05D004285 ORTHO05D005176 4.1e-32 142.5 180 48.3
MELO3C008970.2 Cucumis melo HOM05D004285 ORTHO05D005176 4.1e-32 142.5 170 45.3
BcaB02g09769 Brassica carinata HOM05D004285 ORTHO05D005176 5.4e-32 142.1 180 47.8
CsaV3_4G030940 Cucumis sativus L. HOM05D004285 ORTHO05D005176 5.4e-32 142.1 182 44.0
EL10Ac8g20044 Beta vulgaris HOM05D004285 ORTHO05D005176 7.0e-32 141.7 179 45.3
A06p30500 Brassica napus HOM05D004285 ORTHO05D005176 7.0e-32 141.7 180 48.3
Potri.005G067700 Populus trichocarpa HOM05D004285 ORTHO05D005176 7.0e-32 141.7 169 47.9
Hund21406 Selenicereus undatus HOM05D004285 ORTHO05D005176 7.0e-32 141.7 189 45.5
TAR628G0040 Trochodendron aralioides HOM05D004285 ORTHO05D005176 7.0e-32 141.7 179 45.3
VMungo1309G3080 Vigna mungo HOM05D004285 ORTHO05D005176 7.0e-32 141.7 177 44.6
CiPaw.03G117900 Carya illinoinensis HOM05D004285 ORTHO05D005176 9.1e-32 141.4 169 47.9
Lalb_Chr11g0068611 Lupinus albus HOM05D004285 ORTHO05D005176 9.1e-32 141.4 170 45.9
MD15G1135100 Malus domestica HOM05D004285 ORTHO05D005176 9.1e-32 141.4 171 47.4
Nitab4.5_0009744g0020 Nicotiana tabacum HOM05D004285 ORTHO05D005176 9.1e-32 141.4 170 47.1
Peaxi162Scf00169g00092 Petunia axillaris HOM05D004285 ORTHO05D005176 9.1e-32 141.4 170 47.1
Potri.007G101500 Populus trichocarpa HOM05D004285 ORTHO05D005176 9.1e-32 141.4 169 48.5
Sed0015518 Sechium edule HOM05D004285 ORTHO05D005176 9.1e-32 141.4 170 44.7
AT5G63880 Arabidopsis thaliana HOM05D004285 ORTHO05D005176 1.2e-31 141.0 180 47.2
Carub.0008s2465 Capsella rubella HOM05D004285 ORTHO05D005176 1.2e-31 141.0 180 47.2
FAN22G0010 Fragaria x ananassa HOM05D004285 ORTHO05D005176 1.2e-31 141.0 190 44.7
Gorai.012G036800 Gossypium raimondii HOM05D004285 ORTHO05D005176 1.2e-31 141.0 180 43.9
TAR376G0205 Trochodendron aralioides HOM05D004285 ORTHO05D005176 1.2e-31 141.0 179 44.7
Cpa.g.sc37.8 Carica papaya HOM05D004285 ORTHO05D005176 1.6e-31 140.6 191 45.5
Thhalv10004899m.g Eutrema salsugineum HOM05D004285 ORTHO05D005176 1.6e-31 140.6 163 49.7
Gohir.D04G032400 Gossypium hirsutum HOM05D004285 ORTHO05D005176 1.6e-31 140.6 170 46.5
Lj1g0004585 Lotus japonicus HOM05D004285 ORTHO05D005176 1.6e-31 140.6 177 44.6
Phvul.009G154500 Phaseolus vulgaris HOM05D004285 ORTHO05D005176 1.6e-31 140.6 179 44.1
Sabra07G0083700 Salix brachista HOM05D004285 ORTHO05D005176 1.6e-31 140.6 169 47.9
Thecc.01G137100 Theobroma cacao HOM05D004285 ORTHO05D005176 1.6e-31 140.6 169 47.3
Sabra05G0055600 Salix brachista HOM05D004285 ORTHO05D005176 2.0e-31 140.2 179 45.3
FvH4_4g10490 Fragaria vesca HOM05D004285 ORTHO05D005176 2.7e-31 139.8 190 44.7
TWI75G0304 Tripterygium wilfordii HOM05D004285 ORTHO05D005176 2.7e-31 139.8 169 46.2
VMungo1309G0657 Vigna mungo HOM05D004285 ORTHO05D005176 2.7e-31 139.8 179 44.7
AUR62012692 Chenopodium quinoa HOM05D004285 ORTHO05D005176 3.5e-31 139.4 179 46.9
AUR62021963 Chenopodium quinoa HOM05D004285 ORTHO05D005176 3.5e-31 139.4 179 46.9
Duzib264G0533 Durio zibethinus HOM05D004285 ORTHO05D005176 3.5e-31 139.4 174 45.4
MBI04_g38139_MAGBIO Magnolia biondii HOM05D004285 ORTHO05D005176 3.5e-31 139.4 170 47.1
Nitab4.5_0000668g0170 Nicotiana tabacum HOM05D004285 ORTHO05D005176 3.5e-31 139.4 179 46.9
Sp2g26940 Schrenkiella parvula HOM05D004285 ORTHO05D005176 3.5e-31 139.4 180 46.7
Gohir.A05G382800 Gossypium hirsutum HOM05D004285 ORTHO05D005176 4.5e-31 139.0 170 45.9
RcHm_v2.0_Chr4g0406031 Rosa chinensis HOM05D004285 ORTHO05D005176 4.5e-31 139.0 171 46.8
BcaNung04632 Brassica carinata HOM05D004285 ORTHO05D005176 5.9e-31 138.7 180 45.0
BcaNung04637 Brassica carinata HOM05D004285 ORTHO05D005176 5.9e-31 138.7 180 45.0
Cfa002202 Carpinus fangiana HOM05D004285 ORTHO05D005176 5.9e-31 138.7 188 44.7
Manes.06G003800 Manihot esculenta HOM05D004285 ORTHO05D005176 5.9e-31 138.7 177 45.2
PSO170G3147 Papaver somniferum HOM05D004285 ORTHO05D005176 5.9e-31 138.7 179 47.5
CARHR277780 Cardamine hirsuta HOM05D004285 ORTHO05D005176 7.7e-31 138.3 189 45.0
CBR_g70720 Chara braunii HOM05D004285 ORTHO05D005176 7.7e-31 138.3 189 46.0
PSO675G1889 Papaver somniferum HOM05D004285 ORTHO05D005176 7.7e-31 138.3 179 46.4
Sopen12g032480 Solanum pennellii HOM05D004285 ORTHO05D005176 7.7e-31 138.3 170 46.5
SGA_v2.0_scaffold12G06217 Striga asiatica HOM05D004285 ORTHO05D005176 7.7e-31 138.3 176 45.5
MSTRG.22052 Avicennia marina HOM05D004285 ORTHO05D005176 1.0e-30 137.9 170 45.3
Sc03g0010160 Simmondsia chinensis HOM05D004285 ORTHO05D005176 1.0e-30 137.9 187 43.9
HPP92_022156 Vanilla planifolia HOM05D004285 ORTHO05D005176 1.0e-30 137.9 177 45.2
Glyma.06G155800 Glycine max HOM05D004285 ORTHO05D005176 1.3e-30 137.5 179 43.6
Prupe.4G274300 Prunus persica HOM05D004285 ORTHO05D005176 1.3e-30 137.5 170 45.9
CDE02G0727 Ceratophyllum demersum HOM05D004285 ORTHO05D005176 1.7e-30 137.1 171 46.2
Glyma.04G210200 Glycine max HOM05D004285 ORTHO05D005176 1.7e-30 137.1 179 43.6
Actinidia20030 Actinidia chinensis HOM05D004285 ORTHO05D005176 2.2e-30 136.7 191 42.9
AagrBONN_evm.TU.Sc2ySwM_228.3779 Anthoceros agrestis HOM05D004285 ORTHO05D005176 2.9e-30 136.3 190 44.7
HanXRQChr09g0241311 Helianthus annuus HOM05D004285 ORTHO05D005176 2.9e-30 136.3 190 42.1
Aqoxy6G00309 Aquilegia oxysepala HOM05D004285 ORTHO05D005176 5.0e-30 135.6 156 48.1
CDE08G1470 Ceratophyllum demersum HOM05D004285 ORTHO05D005176 8.5e-30 134.8 174 45.4
PSO407G0164 Papaver somniferum HOM05D004285 ORTHO05D005176 8.5e-30 134.8 179 45.3
Oeu050306.1 Olea europaea HOM05D004285 ORTHO05D005176 1.5e-29 134.0 175 44.0
Duzib187G0355 Durio zibethinus HOM05D004285 ORTHO05D005176 1.9e-29 133.7 169 45.0
unitig_736.g22477 Utricularia gibba HOM05D004285 ORTHO05D005176 3.2e-29 132.9 170 44.7
Medtr3g096680 Medicago truncatula HOM05D004285 ORTHO05D005176 5.5e-29 132.1 202 41.6
ATR0706G129 Amborella trichopoda HOM05D004285 ORTHO05D005176 7.2e-29 131.7 172 44.2
arahy.Tifrunner.gnm1.ann1.054DCV Arachis hypogaea HOM05D004285 ORTHO05D005176 9.5e-29 131.3 188 42.0
arahy.Tifrunner.gnm1.ann1.GQS5IM Arachis hypogaea HOM05D004285 ORTHO05D005176 9.5e-29 131.3 188 42.0
DCAR_001476 Daucus carota HOM05D004285 ORTHO05D005176 9.5e-29 131.3 156 46.8
ECA234G4310 Erigeron canadensis HOM05D004285 ORTHO05D005176 9.5e-29 131.3 192 42.2
Carub.0006s0781 Capsella rubella HOM05D004285 ORTHO05D005176 1.2e-28 131.0 178 46.1
BraA06t25999Z Brassica rapa HOM05D004285 ORTHO05D005176 2.1e-28 130.2 202 43.6
Thhalv10014638m.g Eutrema salsugineum HOM05D004285 ORTHO05D005176 6.1e-28 128.6 169 45.0
Aa31LG3G17740 Aethionema arabicum HOM05D004285 ORTHO05D005176 8.0e-28 128.3 175 45.1
Sp6g34050 Schrenkiella parvula HOM05D004285 ORTHO05D005176 2.3e-27 126.7 179 44.1
BcaB08g37222 Brassica carinata HOM05D004285 ORTHO05D005176 4.0e-27 125.9 174 44.8
A10p27950 Brassica napus HOM05D004285 ORTHO05D005176 4.0e-27 125.9 179 44.1
THA.LOC104819347 Tarenaya hassleriana HOM05D004285 ORTHO05D005176 4.0e-27 125.9 179 42.5
AL8G41110 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 5.2e-27 125.6 189 42.3
AagrBONN_evm.TU.Sc2ySwM_117.2591 Anthoceros agrestis HOM05D004285 ORTHO05D005176 1.2e-26 124.4 194 41.8
Ciclev10002389m.g Citrus clementina HOM05D004285 ORTHO05D005176 1.2e-26 124.4 190 42.6
C09p68090 Brassica napus HOM05D004285 ORTHO05D005176 3.4e-26 122.9 178 44.4
Zm00001eb246180 Zea mays HOM05D004285 ORTHO05D005176 4.4e-26 122.5 178 43.8
Zm00001eb183830 Zea mays HOM05D004285 ORTHO05D005176 5.7e-26 122.1 175 44.0
THA.LOC104818421 Tarenaya hassleriana HOM05D004285 ORTHO05D005176 9.8e-26 121.3 169 42.0
Haze_25379 Corylus avellana HOM05D004285 ORTHO05D005176 1.7e-25 120.6 224 37.5
Solyc12g096650.2 Solanum lycopersicum HOM05D004285 ORTHO05D005176 2.8e-25 119.8 170 42.4
FAN10G2762 Fragaria x ananassa HOM05D004285 ORTHO05D005176 4.9e-25 119.0 173 42.2
FAN12G0473 Fragaria x ananassa HOM05D004285 ORTHO05D005176 4.9e-25 119.0 134 49.3
CAN.G566.38 Capsicum annuum HOM05D004285 ORTHO05D005176 6.3e-25 118.6 179 41.9
CiPaw.04G079800 Carya illinoinensis HOM05D004285 ORTHO05D005176 1.1e-24 117.9 170 42.4
Nn5g28435 Nelumbo nucifera HOM05D004285 ORTHO05D005176 1.1e-24 117.9 181 40.9
CARHR204160 Cardamine hirsuta HOM05D004285 ORTHO05D005176 1.4e-24 117.5 147 47.6
Nitab4.5_0008205g0020 Nicotiana tabacum HOM05D004285 ORTHO05D005176 2.4e-24 116.7 170 41.2
Eucgr.H05139 Eucalyptus grandis HOM05D004285 ORTHO05D005176 3.1e-24 116.3 178 40.4
Peaxi162Scf01205g00036 Petunia axillaris HOM05D004285 ORTHO05D005176 1.2e-23 114.4 149 45.0
BraA10t44845Z Brassica rapa HOM05D004285 ORTHO05D005176 1.6e-23 114.0 189 40.2
FvH4_7g03820 Fragaria vesca HOM05D004285 ORTHO05D005176 2.0e-23 113.6 179 40.8
FAN06G1556 Fragaria x ananassa HOM05D004285 ORTHO05D005176 2.0e-23 113.6 179 40.8
Nitab4.5_0000013g0100 Nicotiana tabacum HOM05D004285 ORTHO05D005176 4.5e-23 112.5 154 44.2
BolC9t59565H Brassica oleracea HOM05D004285 ORTHO05D005176 5.9e-23 112.1 201 38.8
Lj2A489T51 Lonicera japonica HOM05D004285 ORTHO05D005176 5.9e-23 112.1 124 49.2
Rhsim08G0027500 Rhododendron simsii HOM05D004285 ORTHO05D005176 1.0e-22 111.3 163 38.7
Lsat_1_v5_gn_4_38601 Lactuca sativa HOM05D004285 ORTHO05D005176 1.7e-22 110.5 194 37.1
Pp3c2_32100 Physcomitrium patens HOM05D004285 ORTHO05D005176 1.7e-22 110.5 171 42.7
Os02g0596500 Oryza sativa ssp. japonica HOM05D004285 ORTHO05D005176 2.9e-22 109.8 175 41.1
CAN.G607.7 Capsicum annuum HOM05D004285 ORTHO05D005176 5.0e-22 109.0 205 38.0
COL.COLO4_35812 Corchorus olitorius HOM05D003519 ORTHO05D004443 8.6e-22 108.2 143 44.8
ClCG04G001580 Citrullus lanatus HOM05D004285 ORTHO05D005176 1.1e-21 107.8 159 40.9
DCAR_020711 Daucus carota HOM05D004285 ORTHO05D006016 1.9e-21 107.1 151 42.4
Oeu022909.3 Olea europaea HOM05D004285 ORTHO05D005176 5.6e-21 105.5 150 42.0
vmacro18460 Vaccinium macrocarpon HOM05D004285 ORTHO05D005176 4.7e-20 102.4 176 38.1
MBI18_g28836_MAGBIO Magnolia biondii HOM05D004285 ORTHO05D005176 4.9e-17 92.4 102 49.0
FAN12G2135 Fragaria x ananassa HOM05D004285 ORTHO05D005176 5.4e-16 89.0 106 46.2
FAN03G0757 Fragaria x ananassa HOM05D004285 ORTHO05D005176 1.2e-15 87.8 145 40.0
C09p68060 Brassica napus HOM05D004285 ORTHO05D005176 2.0e-15 87.0 126 40.5
C09p68120 Brassica napus HOM05D004285 ORTHO05D005176 2.0e-15 87.0 126 40.5
Cfa026504 Carpinus fangiana HOM05D004285 ORTHO05D005176 5.9e-15 85.5 174 37.4
MCO14G274 Micromonas commoda HOM05D004285 ORTHO05D005176 7.3e-13 78.6 170 35.3
PRCOL_00005830 Prasinoderma coloniale HOM05D004285 ORTHO05D005176 1.2e-12 77.8 172 33.1
Haze_26675 Corylus avellana HOM05D004285 ORTHO05D005176 3.1e-11 73.2 174 32.8
MBI04_g07580_MAGBIO Magnolia biondii HOM05D004285 ORTHO05D005176 1.5e-10 70.9 97 44.3
AagrBONN_evm.TU.Sc2ySwM_344.1024 Anthoceros agrestis HOM05D004285 ORTHO05D005176 7.5e-10 68.6 92 44.6
AL697U10010 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 1.7e-09 67.4 78 48.7
Migut.G00927 Erythranthe guttata HOM05D004285 ORTHO05D005176 8.3e-09 65.1 79 46.8
Aa31LG4G3130 Aethionema arabicum HOM05D004285 ORTHO05D005176 1.9e-08 63.9 75 44.0
C09p67470 Brassica napus HOM05D004285 ORTHO05D005176 4.1e-08 62.8 65 53.8
BolC9t59508H Brassica oleracea HOM05D004285 ORTHO05D005176 1.2e-07 61.2 54 53.7
MCO05G687 Micromonas commoda HOM05D001726 ORTHO05D001761 1.2e-07 61.2 170 32.4
FAN20G1695 Fragaria x ananassa HOM05D001726 ORTHO05D001761 3.5e-07 59.7 160 31.2
Mapoly0016s0116 Marchantia polymorpha HOM05D001726 ORTHO05D001761 3.5e-07 59.7 161 30.4
Cre06.g282200 Chlamydomonas reinhardtii HOM05D001726 ORTHO05D001761 1.0e-06 58.2 169 26.0
Actinidia06578 Actinidia chinensis HOM05D004285 ORTHO05D005176 1.3e-06 57.8 61 49.2
AL1G38920 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 3.0e-06 56.6 66 48.5
PGR044G0998 Punica granatum HOM05D001726 ORTHO05D001761 5.0e-06 55.8 188 28.2


User provided reference genes

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