Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre13.g578750 Chlamydomonas reinhardtii HOM05D002170 ORTHO05D007478 1.5e-253 879.0 432 100.0
Pp3c20_21870 Physcomitrium patens HOM05D002170 ORTHO05D007478 2.0e-157 559.7 379 71.2
Mapoly0033s0018 Marchantia polymorpha HOM05D002170 ORTHO05D007478 9.2e-155 550.8 429 64.1
AagrBONN_evm.TU.Sc2ySwM_362.1270 Anthoceros agrestis HOM05D002170 ORTHO05D007478 1.6e-154 550.1 380 68.9
MCO10G163 Micromonas commoda HOM05D002170 ORTHO05D007478 3.5e-154 548.9 385 68.3
Pp3c23_13670 Physcomitrium patens HOM05D002170 ORTHO05D007478 5.6e-152 541.6 379 68.6
CBR_g39071 Chara braunii HOM05D002170 ORTHO05D007478 9.5e-152 540.8 385 65.7
CsaV3_1G007330 Cucumis sativus L. HOM05D002170 ORTHO05D007478 1.2e-151 540.4 402 65.7
Solyc03g097910.4 Solanum lycopersicum HOM05D002170 ORTHO05D007478 6.2e-151 538.1 378 67.5
Sopen03g028630 Solanum pennellii HOM05D002170 ORTHO05D007478 6.2e-151 538.1 378 67.5
PGSC0003DMG400033683 Solanum tuberosum HOM05D002170 ORTHO05D007478 6.2e-151 538.1 378 67.5
Carub.0003s1752 Capsella rubella HOM05D002170 ORTHO05D007478 8.0e-151 537.7 380 67.6
Sp3g15930 Schrenkiella parvula HOM05D002170 ORTHO05D007478 1.1e-150 537.3 389 65.8
Migut.D01219 Erythranthe guttata HOM05D002170 ORTHO05D007478 1.8e-150 536.6 378 67.7
CARHR093160 Cardamine hirsuta HOM05D002170 ORTHO05D007478 3.1e-150 535.8 386 65.8
MELO3C002149.2 Cucumis melo HOM05D002170 ORTHO05D007478 4.0e-150 535.4 402 65.2
Thhalv10020777m.g Eutrema salsugineum HOM05D002170 ORTHO05D007478 4.0e-150 535.4 385 66.2
ClCG04G010450 Citrullus lanatus HOM05D002170 ORTHO05D007478 6.8e-150 534.6 384 66.4
ATR0118G019 Amborella trichopoda HOM05D002170 ORTHO05D007478 8.9e-150 534.3 375 67.5
CANSAT35G0706 Cannabis sativa HOM05D002170 ORTHO05D007478 8.9e-150 534.3 378 66.4
Ca_25357_v3 Cicer arietinum L. HOM05D002170 ORTHO05D007478 8.9e-150 534.3 381 66.7
SalBow5G3655 Salvia bowleyana HOM05D002170 ORTHO05D007478 8.9e-150 534.3 378 67.5
Zm00001eb253890 Zea mays HOM05D002170 ORTHO05D007478 1.5e-149 533.5 378 66.9
Aqoxy3G04073 Aquilegia oxysepala HOM05D002170 ORTHO05D007478 3.4e-149 532.3 378 66.7
Oeu023513.1 Olea europaea HOM05D002170 ORTHO05D007478 4.4e-149 531.9 379 66.5
Gohir.A09G175200 Gossypium hirsutum HOM05D002170 ORTHO05D007478 5.8e-149 531.6 410 62.7
Gorai.006G191200 Gossypium raimondii HOM05D002170 ORTHO05D007478 5.8e-149 531.6 410 62.7
Sed0008892 Sechium edule HOM05D002170 ORTHO05D007478 5.8e-149 531.6 385 65.7
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 7.5e-149 531.2 378 66.4
Gohir.D09G169700 Gossypium hirsutum HOM05D002170 ORTHO05D007478 7.5e-149 531.2 410 62.7
AT3G17810 Arabidopsis thaliana HOM05D002170 ORTHO05D007478 1.3e-148 530.4 386 65.3
THA.LOC104820334 Tarenaya hassleriana HOM05D002170 ORTHO05D007478 1.3e-148 530.4 378 66.9
arahy.Tifrunner.gnm1.ann1.DTQ5EB Arachis hypogaea HOM05D002170 ORTHO05D007478 1.7e-148 530.0 426 62.0
Os02g0736400 Oryza sativa ssp. japonica HOM05D002170 ORTHO05D007478 1.7e-148 530.0 424 61.8
PRCOL_00005290 Prasinoderma coloniale HOM05D002170 ORTHO05D007478 1.7e-148 530.0 365 69.0
SMO356G0689 Selaginella moellendorffii HOM05D002170 ORTHO05D007478 1.7e-148 530.0 384 66.4
AL3G30970 Arabidopsis lyrata HOM05D002170 ORTHO05D007478 2.9e-148 529.3 386 65.5
arahy.Tifrunner.gnm1.ann1.U6RNCV Arachis hypogaea HOM05D002170 ORTHO05D007478 3.7e-148 528.9 426 62.0
BcaNung05883 Brassica carinata HOM05D002170 ORTHO05D007478 4.9e-148 528.5 377 66.6
Glyma.09G172700 Glycine max HOM05D002170 ORTHO05D007478 4.9e-148 528.5 378 65.9
BcaC09g48741 Brassica carinata HOM05D002170 ORTHO05D007478 8.3e-148 527.7 383 65.3
A01p36570 Brassica napus HOM05D002170 ORTHO05D007478 8.3e-148 527.7 383 65.3
Lalb_Chr14g0370711 Lupinus albus HOM05D002170 ORTHO05D007478 8.3e-148 527.7 383 65.5
Prupe.5G236800 Prunus persica HOM05D002170 ORTHO05D007478 8.3e-148 527.7 378 66.4
vmacro17769 Vaccinium macrocarpon HOM05D002170 ORTHO05D007478 8.3e-148 527.7 378 66.7
BcaB04g20814 Brassica carinata HOM05D002170 ORTHO05D007478 1.1e-147 527.3 377 66.3
Duzib084G0411 Durio zibethinus HOM05D002170 ORTHO05D007478 1.1e-147 527.3 410 62.7
C05p48530 Brassica napus HOM05D002170 ORTHO05D007478 1.4e-147 526.9 380 65.8
DCAR_003532 Daucus carota HOM05D002170 ORTHO05D007478 1.4e-147 526.9 378 66.7
Medtr6g071210 Medicago truncatula HOM05D002170 ORTHO05D007478 1.4e-147 526.9 385 66.0
MSTRG.9351 Avicennia marina HOM05D002170 ORTHO05D007478 1.9e-147 526.6 386 65.3
Haze_18913 Corylus avellana HOM05D002170 ORTHO05D007478 1.9e-147 526.6 378 65.9
Duzib068G1477 Durio zibethinus HOM05D002170 ORTHO05D007478 1.9e-147 526.6 378 65.9
Lj2g0009559 Lotus japonicus HOM05D002170 ORTHO05D007478 1.9e-147 526.6 378 66.7
Rhsim08G0127800 Rhododendron simsii HOM05D002170 ORTHO05D007478 1.9e-147 526.6 378 66.4
Cc04_g09360 Coffea canephora HOM05D002170 ORTHO05D007478 2.4e-147 526.2 381 66.1
FvH4_5g17680 Fragaria vesca HOM05D002170 ORTHO05D007478 2.4e-147 526.2 378 66.4
RcHm_v2.0_Chr7g0177971 Rosa chinensis HOM05D002170 ORTHO05D007478 2.4e-147 526.2 378 66.4
SEGI_10571 Sequoiadendron giganteum HOM05D002170 ORTHO05D007478 2.4e-147 526.2 380 66.6
A05p32010 Brassica napus HOM05D002170 ORTHO05D007478 3.2e-147 525.8 380 65.8
CDE06G2490 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 3.2e-147 525.8 380 65.8
FAN18G3495 Fragaria x ananassa HOM05D002170 ORTHO05D007478 3.2e-147 525.8 378 66.1
C01p46400 Brassica napus HOM05D002170 ORTHO05D007478 4.1e-147 525.4 383 65.0
CAN.G637.44 Capsicum annuum HOM05D002170 ORTHO05D007478 5.4e-147 525.0 378 65.9
FAN08G0558 Fragaria x ananassa HOM05D002170 ORTHO05D007478 5.4e-147 525.0 378 66.4
Glyma.07G105400 Glycine max HOM05D002170 ORTHO05D007478 5.4e-147 525.0 421 59.9
TAR629G0118 Trochodendron aralioides HOM05D002170 ORTHO05D007478 5.4e-147 525.0 378 65.6
BcaB04g18965 Brassica carinata HOM05D002170 ORTHO05D007478 7.0e-147 524.6 377 65.8
MD14G1239300 Malus domestica HOM05D002170 ORTHO05D007478 7.0e-147 524.6 378 66.4
QL10p031496 Quercus lobata HOM05D002170 ORTHO05D007478 7.0e-147 524.6 380 65.8
TWI81G0098 Tripterygium wilfordii HOM05D002170 ORTHO05D007478 7.0e-147 524.6 389 64.3
MD06G1232500 Malus domestica HOM05D002170 ORTHO05D007478 9.2e-147 524.2 378 66.7
HPP92_007961 Vanilla planifolia HOM05D002170 ORTHO05D007478 9.2e-147 524.2 377 65.8
BolC1t04600H Brassica oleracea HOM05D002170 ORTHO05D007478 1.2e-146 523.9 383 64.8
FAN04G0031 Fragaria x ananassa HOM05D002170 ORTHO05D007478 1.2e-146 523.9 378 65.9
Thecc.03G062200 Theobroma cacao HOM05D002170 ORTHO05D007478 1.2e-146 523.9 378 65.6
BolC5t33589H Brassica oleracea HOM05D002170 ORTHO05D007478 1.6e-146 523.5 380 65.5
CSS0042449 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 1.6e-146 523.5 378 65.9
CSS0009402 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 2.1e-146 523.1 378 65.9
Lalb_Chr22g0353421 Lupinus albus HOM05D002170 ORTHO05D007478 2.1e-146 523.1 417 61.4
Sabra15G0025500 Salix brachista HOM05D002170 ORTHO05D007478 3.5e-146 522.3 384 64.8
Ah.16g108010 Amaranthus hybridus HOM05D002170 ORTHO05D007478 6.0e-146 521.5 378 66.1
EL10Ac2g03531 Beta vulgaris HOM05D002170 ORTHO05D007478 6.0e-146 521.5 378 65.1
TPR.G22320 Trifolium pratense HOM05D002170 ORTHO05D007478 6.0e-146 521.5 381 66.1
Actinidia09052 Actinidia chinensis HOM05D002170 ORTHO05D007478 1.0e-145 520.8 378 65.6
Cfa020634 Carpinus fangiana HOM05D002170 ORTHO05D007478 1.0e-145 520.8 379 65.2
CiPaw.16G097200 Carya illinoinensis HOM05D002170 ORTHO05D007478 1.3e-145 520.4 378 65.6
Lsat_1_v5_gn_0_10461 Lactuca sativa HOM05D002170 ORTHO05D007478 1.3e-145 520.4 414 60.9
Potri.015G030600 Populus trichocarpa HOM05D002170 ORTHO05D007478 1.3e-145 520.4 384 64.6
BraA05t22032Z Brassica rapa HOM05D002170 ORTHO05D007478 1.7e-145 520.0 392 64.0
Cpa.g.sc3.360 Carica papaya HOM05D002170 ORTHO05D007478 1.7e-145 520.0 383 64.0
AUR62041617 Chenopodium quinoa HOM05D002170 ORTHO05D007478 3.0e-145 519.2 377 65.5
ECA232G0406 Erigeron canadensis HOM05D002170 ORTHO05D007478 3.0e-145 519.2 378 65.1
Eucgr.K02286 Eucalyptus grandis HOM05D002170 ORTHO05D007478 3.9e-145 518.8 378 65.1
PSO384G2182 Papaver somniferum HOM05D002170 ORTHO05D007478 3.9e-145 518.8 381 65.1
Hund22449 Selenicereus undatus HOM05D002170 ORTHO05D007478 5.1e-145 518.5 378 65.1
Atru.BG.197.p Acer truncatum HOM05D002170 ORTHO05D007478 6.6e-145 518.1 377 64.2
BraA01t03721Z Brassica rapa HOM05D002170 ORTHO05D007478 6.6e-145 518.1 385 64.7
Manes.06G002900 Manihot esculenta HOM05D002170 ORTHO05D007478 6.6e-145 518.1 378 64.8
Phvul.004G148000 Phaseolus vulgaris HOM05D002170 ORTHO05D007478 6.6e-145 518.1 378 65.1
HanXRQChr16g0511571 Helianthus annuus HOM05D002170 ORTHO05D007478 1.5e-144 516.9 407 61.2
PSO339G1858 Papaver somniferum HOM05D002170 ORTHO05D007478 1.9e-144 516.5 381 64.8
Sc04g0004500 Simmondsia chinensis HOM05D002170 ORTHO05D007478 1.6e-143 513.5 378 64.0
PGR044G0130 Punica granatum HOM05D002170 ORTHO05D007478 4.7e-143 511.9 379 63.9
HanXRQChr15g0492101 Helianthus annuus HOM05D002170 ORTHO05D007478 6.2e-143 511.5 378 64.0
Hma1.2p1_0471F.1_g159440 Hydrangea macrophylla HOM05D002170 ORTHO05D007478 8.1e-143 511.1 388 63.1
Ciclev10020301m.g Citrus clementina HOM05D002170 ORTHO05D007478 1.1e-142 510.8 387 62.5
Lj9C416G6 Lonicera japonica HOM05D002170 ORTHO05D007478 1.8e-142 510.0 366 65.8
CiPaw.15G147300 Carya illinoinensis HOM05D002170 ORTHO05D007478 3.1e-142 509.2 367 65.7
GSVIVG01008478001 Vitis vinifera HOM05D002170 ORTHO05D007478 6.8e-142 508.1 367 65.9
Peaxi162Scf00171g01030 Petunia axillaris HOM05D002170 ORTHO05D007478 1.2e-141 507.3 378 64.8
AUR62036004 Chenopodium quinoa HOM05D002170 ORTHO05D007478 1.3e-140 503.8 366 65.6
Aa31LG8G4690 Aethionema arabicum HOM05D002170 ORTHO05D007478 8.3e-140 501.1 442 57.9
Atru.chr9.1597 Acer truncatum HOM05D002170 ORTHO05D007478 7.8e-138 494.6 357 65.0
Nitab4.5_0006581g0020 Nicotiana tabacum HOM05D002170 ORTHO05D007478 4.3e-136 488.8 378 63.2
Nitab4.5_0000430g0180 Nicotiana tabacum HOM05D002170 ORTHO05D007478 1.2e-135 487.3 378 63.0
Dinv05998 Davidia involucrata HOM05D002170 ORTHO05D007478 7.6e-133 478.0 330 67.6
Psat1g029560 Pisum sativum HOM05D002170 ORTHO05D007478 2.9e-132 476.1 364 64.0
SHI19063 Sapria himalayana HOM05D002170 ORTHO05D007478 1.3e-124 450.7 327 63.9
BcaC01g03730 Brassica carinata HOM05D002170 ORTHO05D007478 4.2e-123 445.7 370 59.7
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 9.6e-120 434.5 319 67.1
CDE04G1365 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 2.9e-116 422.9 340 60.9
unitig_27.g25082 Utricularia gibba HOM05D002170 ORTHO05D007478 1.9e-107 393.7 287 65.2
BolC3t17203H Brassica oleracea HOM05D002170 ORTHO05D007478 2.5e-96 356.7 298 59.4
C03p49210 Brassica napus HOM05D002170 ORTHO05D007478 4.3e-96 355.9 386 49.2
Oeu016182.1 Olea europaea HOM05D002170 ORTHO05D007478 2.5e-83 313.5 275 59.3
Potri.012G043300 Populus trichocarpa HOM05D002170 ORTHO05D007478 9.4e-75 285.0 266 55.3
Haze_27328 Corylus avellana HOM05D002170 ORTHO05D007478 8.0e-74 282.0 329 43.2
Haze_26546 Corylus avellana HOM05D002170 ORTHO05D007478 3.0e-73 280.0 329 42.6
SGA_v2.0_scaffold40G15643 Striga asiatica HOM05D002170 ORTHO05D007478 1.8e-49 201.1 135 68.9
SGA_v2.0_scaffold1356G53925 Striga asiatica HOM05D002170 ORTHO05D007478 6.0e-37 159.5 116 65.5
Solyc02g044040.3 Solanum lycopersicum HOM05D002170 ORTHO05D390875 2.1e-34 151.0 107 66.4
Psat3g071120 Pisum sativum HOM05D002170 ORTHO05D327785 6.6e-20 102.8 125 48.0
Ca_22557_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148971 6.2e-18 96.3 107 49.5
Phvul.008G096200 Phaseolus vulgaris HOM05D002170 ORTHO05D023792 2.6e-16 90.9 83 50.6
BraA03t13196Z Brassica rapa HOM05D002170 ORTHO05D023792 3.4e-16 90.5 83 50.6
unitig_27.g25081 Utricularia gibba HOM05D002170 ORTHO05D007478 4.4e-16 90.1 55 70.9
A03p40410 Brassica napus HOM05D002170 ORTHO05D023792 2.2e-15 87.8 83 48.2
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 1.3e-12 78.6 197 29.9
MSTRG.4628 Avicennia marina HOM05D002170 ORTHO05D023792 9.6e-11 72.4 76 47.4
MD05G1052900 Malus domestica HOM05D002170 ORTHO05D000222 9.6e-11 72.4 46 69.6


User provided reference genes

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