Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre12.g510050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 3.0e-232 808.1 405 100.0
Cre07.g346050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 1.6e-156 556.6 393 70.2
THA.LOC104803235 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 6.8e-152 541.2 377 68.2
THA.LOC104824384 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 1.1e-149 533.9 377 68.2
Aa31LG10G11840 Aethionema arabicum HOM05D004558 ORTHO05D005647 3.2e-149 532.3 375 68.3
CDE02G2354 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 4.1e-149 531.9 396 65.4
PRCOL_00006479 Prasinoderma coloniale HOM05D004558 ORTHO05D005647 7.1e-149 531.2 358 70.7
Cc06_g22740 Coffea canephora HOM05D004558 ORTHO05D005647 1.2e-148 530.4 389 66.3
Phvul.001G108700 Phaseolus vulgaris HOM05D004558 ORTHO05D005647 1.2e-148 530.4 377 67.4
GSVIVG01025841001 Vitis vinifera HOM05D004558 ORTHO05D005647 1.2e-148 530.4 370 68.4
ATR1096G103 Amborella trichopoda HOM05D004558 ORTHO05D005647 1.6e-148 530.0 392 65.8
Duzib093G1273 Durio zibethinus HOM05D004558 ORTHO05D005647 1.6e-148 530.0 388 66.0
Mapoly0124s0017 Marchantia polymorpha HOM05D004558 ORTHO05D005647 2.1e-148 529.6 349 71.6
SMO119G0375 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 2.1e-148 529.6 357 70.6
Manes.09G073800 Manihot esculenta HOM05D004558 ORTHO05D005647 2.7e-148 529.3 377 66.8
Sc19g0007850 Simmondsia chinensis HOM05D004558 ORTHO05D005647 3.5e-148 528.9 371 69.3
TWI53G2040 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 3.5e-148 528.9 380 66.3
VMungo1383G3341 Vigna mungo HOM05D004558 ORTHO05D005647 3.5e-148 528.9 377 67.6
Pp3c11_7910 Physcomitrium patens HOM05D004558 ORTHO05D005647 4.6e-148 528.5 379 66.8
SEGI_29193 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 6.0e-148 528.1 378 67.7
Prupe.7G022500 Prunus persica HOM05D004558 ORTHO05D005647 7.8e-148 527.7 388 66.0
Eucgr.A02177 Eucalyptus grandis HOM05D004558 ORTHO05D005647 1.0e-147 527.3 384 66.7
Glyma.03G119500 Glycine max HOM05D004558 ORTHO05D005647 1.0e-147 527.3 392 66.3
Sed0025713 Sechium edule HOM05D004558 ORTHO05D005647 1.0e-147 527.3 400 65.5
Cpa.g.sc92.57 Carica papaya HOM05D004558 ORTHO05D005647 1.3e-147 526.9 381 66.7
ClCG04G004930 Citrullus lanatus HOM05D004558 ORTHO05D005647 1.3e-147 526.9 388 66.2
CsaV3_4G031720 Cucumis sativus L. HOM05D004558 ORTHO05D005647 1.3e-147 526.9 388 66.2
Sabra16G0030900 Salix brachista HOM05D004558 ORTHO05D005647 1.3e-147 526.9 380 67.4
Sabra06G0020200 Salix brachista HOM05D004558 ORTHO05D005647 1.7e-147 526.6 380 67.1
Actinidia00883 Actinidia chinensis HOM05D004558 ORTHO05D005647 2.3e-147 526.2 353 70.3
Thecc.05G130200 Theobroma cacao HOM05D004558 ORTHO05D005647 2.3e-147 526.2 377 67.6
BcaC07g40007 Brassica carinata HOM05D004558 ORTHO05D005647 3.0e-147 525.8 376 67.0
Actinidia38207 Actinidia chinensis HOM05D004558 ORTHO05D005647 3.9e-147 525.4 353 69.7
Thhalv10006009m.g Eutrema salsugineum HOM05D004558 ORTHO05D005647 3.9e-147 525.4 376 67.6
Potri.016G025000 Populus trichocarpa HOM05D004558 ORTHO05D005647 3.9e-147 525.4 380 66.8
Rhsim04G0119100 Rhododendron simsii HOM05D004558 ORTHO05D005647 3.9e-147 525.4 356 70.2
A09p49810 Brassica napus HOM05D004558 ORTHO05D005647 5.1e-147 525.0 376 67.0
BraA09t40434Z Brassica rapa HOM05D004558 ORTHO05D005647 5.1e-147 525.0 376 67.0
Gohir.A01G192400 Gossypium hirsutum HOM05D004558 ORTHO05D005647 5.1e-147 525.0 377 67.1
AUR62018443 Chenopodium quinoa HOM05D004558 ORTHO05D005647 6.6e-147 524.6 381 66.4
AUR62020990 Chenopodium quinoa HOM05D004558 ORTHO05D005647 6.6e-147 524.6 381 66.4
Migut.K00174 Erythranthe guttata HOM05D004558 ORTHO05D005647 6.6e-147 524.6 377 66.3
Lj1g0019045 Lotus japonicus HOM05D004558 ORTHO05D005647 6.6e-147 524.6 377 67.1
HPP92_000696 Vanilla planifolia HOM05D004558 ORTHO05D005647 8.6e-147 524.2 378 67.2
BcaB02g07634 Brassica carinata HOM05D004558 ORTHO05D005647 1.1e-146 523.9 376 67.0
BcaC08g44811 Brassica carinata HOM05D004558 ORTHO05D005647 1.5e-146 523.5 376 67.0
BraA07t29976Z Brassica rapa HOM05D004558 ORTHO05D005647 1.5e-146 523.5 376 67.0
BolC6t37555H Brassica oleracea HOM05D004558 ORTHO05D005647 1.9e-146 523.1 376 67.0
Potri.006G027300 Populus trichocarpa HOM05D004558 ORTHO05D005647 1.9e-146 523.1 380 66.6
AagrBONN_evm.TU.Sc2ySwM_228.50 Anthoceros agrestis HOM05D004558 ORTHO05D005647 3.3e-146 522.3 357 69.7
CSS0026074 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 3.3e-146 522.3 360 68.9
CSS0045826 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 3.3e-146 522.3 360 68.9
Duzib128G1152 Durio zibethinus HOM05D004558 ORTHO05D005647 3.3e-146 522.3 353 70.3
Gohir.D01G177500 Gossypium hirsutum HOM05D004558 ORTHO05D005647 3.3e-146 522.3 348 71.3
BcaC07g40105 Brassica carinata HOM05D004558 ORTHO05D005647 4.3e-146 521.9 376 66.8
A07p23140 Brassica napus HOM05D004558 ORTHO05D005647 4.3e-146 521.9 376 66.8
Lalb_Chr14g0365301 Lupinus albus HOM05D004558 ORTHO05D005647 4.3e-146 521.9 377 66.6
TAR369G0680 Trochodendron aralioides HOM05D004558 ORTHO05D005647 4.3e-146 521.9 353 70.3
unitig_46.g18485 Utricularia gibba HOM05D004558 ORTHO05D005647 4.3e-146 521.9 348 71.3
CiPaw.09G162600 Carya illinoinensis HOM05D004558 ORTHO05D005647 5.6e-146 521.5 377 66.0
Hund24509 Selenicereus undatus HOM05D004558 ORTHO05D005647 5.6e-146 521.5 353 70.5
TWI77G0093 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 5.6e-146 521.5 377 66.8
vmacro08967 Vaccinium macrocarpon HOM05D004558 ORTHO05D005647 5.6e-146 521.5 356 69.7
Aqoxy2G00035_Aqoxy2G00036 Aquilegia oxysepala HOM05D004558 ORTHO05D005647 7.3e-146 521.2 353 70.0
arahy.Tifrunner.gnm1.ann1.VDKY5W Arachis hypogaea HOM05D004558 ORTHO05D005647 7.3e-146 521.2 379 66.8
arahy.Tifrunner.gnm1.ann1.XE2WF0 Arachis hypogaea HOM05D004558 ORTHO05D005647 7.3e-146 521.2 353 70.0
Cfa019915 Carpinus fangiana HOM05D004558 ORTHO05D005647 7.3e-146 521.2 396 64.4
Medtr7g088340 Medicago truncatula HOM05D004558 ORTHO05D005647 7.3e-146 521.2 351 70.4
MSTRG.6287 Avicennia marina HOM05D004558 ORTHO05D005647 9.5e-146 520.8 348 71.0
DCAR_016944 Daucus carota HOM05D004558 ORTHO05D005647 9.5e-146 520.8 386 65.5
MBI13_g30268_MAGBIO Magnolia biondii HOM05D004558 ORTHO05D005647 1.2e-145 520.4 375 66.9
PGR042G2423 Punica granatum HOM05D004558 ORTHO05D005647 1.2e-145 520.4 395 66.1
QL07p015188 Quercus lobata HOM05D004558 ORTHO05D005647 1.2e-145 520.4 377 65.8
CARHR167090 Cardamine hirsuta HOM05D004558 ORTHO05D005647 1.6e-145 520.0 357 69.2
Oeu060750.2 Olea europaea HOM05D004558 ORTHO05D005647 1.6e-145 520.0 359 68.8
SGA_v2.0_scaffold66G22316 Striga asiatica HOM05D004558 ORTHO05D005647 2.1e-145 519.6 381 66.1
Carub.0005s2368 Capsella rubella HOM05D004558 ORTHO05D005647 3.6e-145 518.8 376 66.5
Zm00001eb129000 Zea mays HOM05D004558 ORTHO05D005647 3.6e-145 518.8 374 67.1
Hma1.2p1_0251F.1_g102500 Hydrangea macrophylla HOM05D004558 ORTHO05D005647 4.7e-145 518.5 379 67.5
Nitab4.5_0001270g0120 Nicotiana tabacum HOM05D004558 ORTHO05D005647 4.7e-145 518.5 377 66.8
TPR.G23197 Trifolium pratense HOM05D004558 ORTHO05D005647 4.7e-145 518.5 409 63.1
AL5G38370 Arabidopsis lyrata HOM05D004558 ORTHO05D005647 6.2e-145 518.1 357 69.2
Sp5g05650 Schrenkiella parvula HOM05D004558 ORTHO05D005647 6.2e-145 518.1 376 66.8
Nitab4.5_0000123g0170 Nicotiana tabacum HOM05D004558 ORTHO05D005647 1.1e-144 517.3 377 66.8
PSO384G3158 Papaver somniferum HOM05D004558 ORTHO05D005647 1.1e-144 517.3 385 65.7
Haze_20335 Corylus avellana HOM05D004558 ORTHO05D005647 1.4e-144 516.9 370 66.8
DCAR_013513 Daucus carota HOM05D004558 ORTHO05D005647 1.4e-144 516.9 377 66.3
ECA247G1747 Erigeron canadensis HOM05D004558 ORTHO05D005647 1.4e-144 516.9 393 65.1
HanXRQChr10g0291961 Helianthus annuus HOM05D004558 ORTHO05D005647 1.8e-144 516.5 377 65.8
Ciclev10011842m.g Citrus clementina HOM05D004558 ORTHO05D005647 2.4e-144 516.2 388 64.9
Zm00001eb332650 Zea mays HOM05D004558 ORTHO05D005647 2.4e-144 516.2 391 65.2
Os01g0279100 Oryza sativa ssp. japonica HOM05D004558 ORTHO05D005647 3.1e-144 515.8 385 65.7
Rhsim04G0119000 Rhododendron simsii HOM05D004558 ORTHO05D005647 3.1e-144 515.8 370 67.6
FAN26G0634 Fragaria x ananassa HOM05D004558 ORTHO05D005647 4.0e-144 515.4 353 69.1
PSO339G0825 Papaver somniferum HOM05D004558 ORTHO05D005647 4.0e-144 515.4 385 65.5
CANSAT78G1575 Cannabis sativa HOM05D004558 ORTHO05D005647 5.2e-144 515.0 381 65.9
FAN19G1019 Fragaria x ananassa HOM05D004558 ORTHO05D005647 5.2e-144 515.0 353 69.1
FAN23G1063 Fragaria x ananassa HOM05D004558 ORTHO05D005647 5.2e-144 515.0 353 69.1
TAR546G0001 Trochodendron aralioides HOM05D004558 ORTHO05D005647 5.2e-144 515.0 354 69.2
FvH4_1g28960 Fragaria vesca HOM05D004558 ORTHO05D005647 6.8e-144 514.6 353 69.1
FAN28G2842 Fragaria x ananassa HOM05D004558 ORTHO05D005647 6.8e-144 514.6 353 69.1
Gorai.002G225700 Gossypium raimondii HOM05D004558 ORTHO05D005647 6.8e-144 514.6 357 69.5
RcHm_v2.0_Chr3g0494361 Rosa chinensis HOM05D004558 ORTHO05D005647 6.8e-144 514.6 357 68.3
Lj1A1078T64 Lonicera japonica HOM05D004558 ORTHO05D005647 1.5e-143 513.5 348 70.1
CAN.G959.37 Capsicum annuum HOM05D004558 ORTHO05D005647 2.0e-143 513.1 377 66.6
Lsat_1_v5_gn_9_30221 Lactuca sativa HOM05D004558 ORTHO05D005647 2.0e-143 513.1 392 64.8
Sopen10g028720 Solanum pennellii HOM05D004558 ORTHO05D005647 2.6e-143 512.7 389 65.0
Oeu023011.1 Olea europaea HOM05D004558 ORTHO05D005647 3.4e-143 512.3 361 67.9
Solyc10g077040.2 Solanum lycopersicum HOM05D004558 ORTHO05D005647 5.8e-143 511.5 389 65.0
PGSC0003DMG400007188 Solanum tuberosum HOM05D004558 ORTHO05D005647 5.8e-143 511.5 389 64.8
C06p23840 Brassica napus HOM05D004558 ORTHO05D005647 1.7e-142 510.0 380 65.5
Lalb_Chr24g0400681 Lupinus albus HOM05D004558 ORTHO05D005647 2.2e-142 509.6 377 64.2
MCO13G411 Micromonas commoda HOM05D004558 ORTHO05D005647 8.4e-142 507.7 360 69.7
Peaxi162Scf00003g05355 Petunia axillaris HOM05D004558 ORTHO05D005647 4.1e-141 505.4 398 63.3
unitig_37.g12773 Utricularia gibba HOM05D004558 ORTHO05D005647 2.7e-140 502.7 315 75.2
AT3G56940 Arabidopsis thaliana HOM05D004558 ORTHO05D005647 6.9e-136 488.0 333 69.7
Atru.chr1.1539 Acer truncatum HOM05D004558 ORTHO05D005647 1.3e-131 473.8 283 77.7
CDE04G3757 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 2.8e-129 466.1 383 61.1
EL10Ac3g07349 Beta vulgaris HOM05D004558 ORTHO05D005647 1.9e-125 453.4 357 62.5
Psat3g082520 Pisum sativum HOM05D004558 ORTHO05D005647 6.0e-124 448.4 265 78.9
Pp3c7_26570 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.0e-123 447.6 306 71.6
Dinv11638 Davidia involucrata HOM05D004558 ORTHO05D005647 1.3e-123 447.2 260 80.0
Ca_08344_v3 Cicer arietinum L. HOM05D004558 ORTHO05D005647 2.3e-123 446.4 262 79.4
HPP92_000650 Vanilla planifolia HOM05D004558 ORTHO05D005647 5.1e-123 445.3 280 76.1
SGA_v2.0_scaffold69G23196 Striga asiatica HOM05D004558 ORTHO05D005647 1.2e-119 434.1 370 60.3
SMO115G0161 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 1.5e-111 407.1 403 52.6
Glyma.19G123800 Glycine max HOM05D004558 ORTHO05D005647 7.6e-111 404.8 282 70.9
MELO3C026802.2 Cucumis melo HOM05D004558 ORTHO05D005647 4.9e-110 402.1 266 73.7
CDE02G0342 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 5.9e-103 378.6 269 68.0
CBR_g50688 Chara braunii HOM05D004558 ORTHO05D005647 5.9e-103 378.6 274 69.0
Ah.04g150190 Amaranthus hybridus HOM05D004558 ORTHO05D005647 6.5e-102 375.2 382 52.1
SalBow6G0122 Salvia bowleyana HOM05D004558 ORTHO05D005647 4.7e-92 342.4 248 64.9
SalBow1G4785 Salvia bowleyana HOM05D004558 ORTHO05D005647 2.2e-86 323.6 305 52.8
Oeu021019.1 Olea europaea HOM05D004558 ORTHO05D005647 3.3e-74 283.1 286 53.5
CBR_g55376 Chara braunii HOM05D004558 ORTHO05D005647 9.2e-48 195.3 382 37.2
BolC4t25242H Brassica oleracea HOM05D004558 ORTHO05D005647 1.1e-32 145.2 132 52.3
C04p35620 Brassica napus HOM05D004558 ORTHO05D005647 1.4e-32 144.8 132 51.5
Pp3c2_30650 Physcomitrium patens HOM05D004558 ORTHO05D005647 6.0e-31 139.4 97 70.1
Ah.13g077400 Amaranthus hybridus HOM05D004558 ORTHO05D000435 1.6e-23 114.8 129 51.2
SEGI_20922 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 2.7e-23 114.0 118 49.2
SEGI_05566 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 7.8e-23 112.5 118 48.3
Lalb_Chr22g0357681 Lupinus albus HOM05D004558 ORTHO05D005647 4.7e-20 103.2 72 68.1
AagrBONN_evm.TU.Sc2ySwM_368.2127 Anthoceros agrestis HOM05D004558 ORTHO05D005647 6.2e-20 102.8 62 80.6
A04p03620 Brassica napus HOM05D004558 ORTHO05D005647 1.1e-19 102.1 103 47.6
C08p32210 Brassica napus HOM05D004558 ORTHO05D005647 1.1e-19 102.1 103 47.6
BraA04t16073Z Brassica rapa HOM05D004558 ORTHO05D005647 1.1e-19 102.1 103 47.6
ClCG10G010310 Citrullus lanatus HOM05D004558 ORTHO05D005647 9.0e-19 99.0 71 59.2
AagrBONN_evm.TU.Sc2ySwM_344.4282 Anthoceros agrestis HOM05D004558 ORTHO05D000003 1.4e-16 91.7 65 72.3
BcaC02g09879 Brassica carinata HOM05D004558 ORTHO05D005647 4.2e-16 90.1 93 46.2
CDE02G4696 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 7.3e-13 79.3 94 45.7
Lalb_Chr22g0358091 Lupinus albus HOM05D004558 ORTHO05D005647 7.3e-13 79.3 46 69.6
SEGI_00644 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 3.1e-11 73.9 42 85.7
Lalb_Chr22g0358081 Lupinus albus HOM05D004558 ORTHO05D005647 3.8e-09 67.0 39 79.5
ClCG10G010320 Citrullus lanatus HOM05D004558 ORTHO05D005647 2.3e-06 57.8 82 37.8


User provided reference genes

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