Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre10.g440300 Chlamydomonas reinhardtii HOM05D005087 ORTHO05D006427 0.0e+00 2033.8 1190 100.0
Cre10.g440200 Chlamydomonas reinhardtii HOM05D005087 ORTHO05D006427 5.0e-86 323.9 1137 29.3
MD07G1021900 Malus domestica HOM05D005087 ORTHO05D006427 2.2e-73 282.0 1113 26.0
Medtr4g115050 Medicago truncatula HOM05D005087 ORTHO05D006427 5.4e-72 277.3 1109 26.3
HanXRQChr01g0007751 Helianthus annuus HOM05D005087 ORTHO05D006427 7.8e-71 273.5 1110 25.9
MCO04G035 Micromonas commoda HOM05D005087 ORTHO05D006427 7.8e-71 273.5 1126 27.4
BraA03t10076Z Brassica rapa HOM05D005087 ORTHO05D006427 1.3e-70 272.7 1105 26.3
MSTRG.17010 Avicennia marina HOM05D005087 ORTHO05D006427 8.6e-70 270.0 1113 26.1
A03p07470 Brassica napus HOM05D005087 ORTHO05D006427 8.6e-70 270.0 1105 26.2
Duzib177G0717 Durio zibethinus HOM05D005087 ORTHO05D006427 8.6e-70 270.0 1108 26.4
Thhalv10012535m.g Eutrema salsugineum HOM05D005087 ORTHO05D006427 8.6e-70 270.0 1109 26.1
Prupe.2G022000 Prunus persica HOM05D005087 ORTHO05D006427 8.6e-70 270.0 1108 25.9
MELO3C023581.2 Cucumis melo HOM05D005087 ORTHO05D006427 1.5e-69 269.2 1097 26.3
Migut.B01270 Erythranthe guttata HOM05D005087 ORTHO05D006427 1.9e-69 268.9 1111 25.7
SGA_v2.0_scaffold119G32758 Striga asiatica HOM05D005087 ORTHO05D006427 1.9e-69 268.9 1130 26.2
Lj3g0015731 Lotus japonicus HOM05D005087 ORTHO05D006427 3.3e-69 268.1 1116 25.9
Medtr3g033470 Medicago truncatula HOM05D005087 ORTHO05D006427 3.3e-69 268.1 1124 25.9
RcHm_v2.0_Chr1g0317911 Rosa chinensis HOM05D005087 ORTHO05D006427 4.3e-69 267.7 1103 25.7
Carub.0006s1411 Capsella rubella HOM05D005087 ORTHO05D006427 5.6e-69 267.3 1101 26.3
CARHR197390 Cardamine hirsuta HOM05D005087 ORTHO05D006427 2.1e-68 265.4 1113 25.8
SalBow5G2001 Salvia bowleyana HOM05D005087 ORTHO05D006427 2.8e-68 265.0 1107 26.1
FvH4_7g01640 Fragaria vesca HOM05D005087 ORTHO05D006427 3.6e-68 264.6 1105 26.0
SalBow5G0870 Salvia bowleyana HOM05D005087 ORTHO05D006427 3.6e-68 264.6 1107 26.1
AL6G26800 Arabidopsis lyrata HOM05D005087 ORTHO05D006427 4.7e-68 264.2 1105 26.2
CiPaw.14G002700 Carya illinoinensis HOM05D005087 ORTHO05D006427 6.2e-68 263.8 1126 26.4
Thecc.05G218700 Theobroma cacao HOM05D005087 ORTHO05D006427 1.1e-67 263.1 1112 26.5
CsaV3_7G030750 Cucumis sativus L. HOM05D005087 ORTHO05D006427 2.3e-67 261.9 1097 26.2
Potri.001G262600 Populus trichocarpa HOM05D005087 ORTHO05D006427 3.1e-67 261.5 1107 25.7
Ca_14518_v3 Cicer arietinum L. HOM05D005087 ORTHO05D006427 1.2e-66 259.6 1136 26.1
SEGI_29436 Sequoiadendron giganteum HOM05D005087 ORTHO05D006427 1.5e-66 259.2 1096 25.5
FAN06G3789 Fragaria x ananassa HOM05D005087 ORTHO05D006427 9.9e-66 256.5 1117 25.8
QL04p009808 Quercus lobata HOM05D005087 ORTHO05D006427 1.3e-65 256.1 1111 25.0
Phvul.002G285500 Phaseolus vulgaris HOM05D005087 ORTHO05D006427 2.2e-65 255.4 1118 25.0
Glyma.20G198300 Glycine max HOM05D005087 ORTHO05D006427 3.7e-65 254.6 1119 26.0
TPR.G14572 Trifolium pratense HOM05D005087 ORTHO05D006427 3.7e-65 254.6 1148 25.7
Eucgr.G03334 Eucalyptus grandis HOM05D005087 ORTHO05D006427 6.4e-65 253.8 1116 25.9
Gorai.013G183900 Gossypium raimondii HOM05D005087 ORTHO05D006427 6.4e-65 253.8 1114 25.4
TAR623G1255 Trochodendron aralioides HOM05D005087 ORTHO05D006427 8.3e-65 253.4 1099 24.9
AT5G15920 Arabidopsis thaliana HOM05D005087 ORTHO05D006427 1.4e-64 252.7 1113 25.9
Gohir.D13G161900 Gossypium hirsutum HOM05D005087 ORTHO05D006427 2.4e-64 251.9 1114 25.3
Aqoxy1G00327 Aquilegia oxysepala HOM05D005087 ORTHO05D006427 3.2e-64 251.5 1111 24.7
THA.LOC104819098 Tarenaya hassleriana HOM05D005087 ORTHO05D006427 3.2e-64 251.5 1106 25.1
arahy.Tifrunner.gnm1.ann1.JJ1LEU Arachis hypogaea HOM05D005087 ORTHO05D006427 4.1e-64 251.1 1141 25.4
Lsat_1_v5_gn_1_103161 Lactuca sativa HOM05D005087 ORTHO05D006427 4.1e-64 251.1 1103 24.8
Pp3c24_4940 Physcomitrium patens HOM05D005087 ORTHO05D006427 4.1e-64 251.1 1127 25.2
Psat6g018320 Pisum sativum HOM05D005087 ORTHO05D006427 4.1e-64 251.1 1117 25.9
PRCOL_00002930 Prasinoderma coloniale HOM05D005087 ORTHO05D006427 5.4e-64 250.8 1133 24.8
Atru.chr11.2578 Acer truncatum HOM05D005087 ORTHO05D006427 7.1e-64 250.4 1114 26.0
CDE09G1121 Ceratophyllum demersum HOM05D005087 ORTHO05D006427 9.2e-64 250.0 1085 25.4
Manes.10G136400 Manihot esculenta HOM05D005087 ORTHO05D006427 9.2e-64 250.0 1089 25.5
FAN03G0563 Fragaria x ananassa HOM05D005087 ORTHO05D006427 1.6e-63 249.2 1128 25.8
C03p08670 Brassica napus HOM05D005087 ORTHO05D006427 2.7e-63 248.4 1106 25.6
BolC3t13367H Brassica oleracea HOM05D005087 ORTHO05D006427 2.7e-63 248.4 1106 25.6
Dinv09311 Davidia involucrata HOM05D005087 ORTHO05D006427 2.7e-63 248.4 1124 26.6
Cfa022636 Carpinus fangiana HOM05D005087 ORTHO05D006427 6.0e-63 247.3 1125 26.0
Rhsim01G0127000 Rhododendron simsii HOM05D005087 ORTHO05D006427 1.0e-62 246.5 1097 25.3
DCAR_029700 Daucus carota HOM05D005087 ORTHO05D006427 1.3e-62 246.1 1131 25.5
Lj9C640G8 Lonicera japonica HOM05D005087 ORTHO05D006427 3.9e-62 244.6 1101 25.3
Sp6g28190 Schrenkiella parvula HOM05D005087 ORTHO05D006427 3.9e-62 244.6 1107 26.1
PSO339G3397 Papaver somniferum HOM05D005087 ORTHO05D006427 5.1e-62 244.2 1108 25.8
Gohir.A13G157100 Gossypium hirsutum HOM05D005087 ORTHO05D006427 6.6e-62 243.8 1111 25.2
arahy.Tifrunner.gnm1.ann1.1A5L99 Arachis hypogaea HOM05D005087 ORTHO05D006427 1.1e-61 243.0 1130 25.9
CSS0029256 Camellia sinensis var. sinensis HOM05D005087 ORTHO05D006427 2.5e-61 241.9 1118 25.1
SMO143G0265 Selaginella moellendorffii HOM05D005087 ORTHO05D006427 2.5e-61 241.9 1108 24.6
TWI09G0473 Tripterygium wilfordii HOM05D005087 ORTHO05D006427 4.3e-61 241.1 1101 25.2
Aa31LG11G13680 Aethionema arabicum HOM05D005087 ORTHO05D006427 9.6e-61 240.0 1147 24.9
BcaB01g05014 Brassica carinata HOM05D005087 ORTHO05D006427 9.6e-61 240.0 1106 25.2
CANSAT80G0443 Cannabis sativa HOM05D005087 ORTHO05D006427 9.6e-61 240.0 1135 25.3
CBR_g88572 Chara braunii HOM05D005087 ORTHO05D000002 1.6e-60 239.2 948 28.1
GSVIVG01032195001 Vitis vinifera HOM05D005087 ORTHO05D006427 1.6e-60 239.2 1111 25.1
Cc02_g28540 Coffea canephora HOM05D005087 ORTHO05D006427 1.1e-59 236.5 924 27.4
ClCG09G004390 Citrullus lanatus HOM05D005087 ORTHO05D006427 1.8e-59 235.7 1103 25.4
Mapoly0007s0066 Marchantia polymorpha HOM05D005087 ORTHO05D006427 2.4e-59 235.3 1116 25.0
Os05g0596600 Oryza sativa ssp. japonica HOM05D005087 ORTHO05D006427 2.4e-59 235.3 1117 26.1
Peaxi162Scf00694g00319 Petunia axillaris HOM05D005087 ORTHO05D006427 3.1e-59 235.0 1122 25.0
PSO210G7144 Papaver somniferum HOM05D005087 ORTHO05D006427 4.0e-59 234.6 1124 24.6
Nn7g36293 Nelumbo nucifera HOM05D005087 ORTHO05D006427 5.2e-59 234.2 941 26.8
Cpa.g.sc125.40 Carica papaya HOM05D005087 ORTHO05D006427 2.0e-58 232.3 941 27.1
Ciclev10030582m.g Citrus clementina HOM05D005087 ORTHO05D006427 3.4e-58 231.5 1113 25.4
ECA248G2604 Erigeron canadensis HOM05D005087 ORTHO05D006427 5.8e-58 230.7 1102 24.9
Medtr5g036370 Medicago truncatula HOM05D005087 ORTHO05D006427 2.2e-57 228.8 1110 25.4
Sopen01g034670 Solanum pennellii HOM05D005087 ORTHO05D006427 5.4e-56 224.2 1132 25.1
FAN10G1149 Fragaria x ananassa HOM05D005087 ORTHO05D006427 1.6e-55 222.6 1128 24.6
Solyc01g087720.4 Solanum lycopersicum HOM05D005087 ORTHO05D006427 2.1e-55 222.2 1132 24.9
Sed0026614 Sechium edule HOM05D005087 ORTHO05D006427 4.6e-55 221.1 930 27.6
Lalb_Chr04g0263871 Lupinus albus HOM05D005087 ORTHO05D006427 3.9e-54 218.0 1121 24.4
Hund09863 Selenicereus undatus HOM05D005087 ORTHO05D006427 5.1e-54 217.6 937 27.0
VMungo0251G2588 Vigna mungo HOM05D005087 ORTHO05D006427 1.9e-53 215.7 929 26.2
AUR62023092 Chenopodium quinoa HOM05D005087 ORTHO05D006427 8.4e-49 200.3 1105 25.3
Lj3g0013327 Lotus japonicus HOM05D005087 ORTHO05D006427 5.4e-48 197.6 1103 24.4
Lju99A9T21 Lonicera japonica HOM05D005087 ORTHO05D006427 7.1e-48 197.2 1138 24.9
ATR0626G229 Amborella trichopoda HOM05D005087 ORTHO05D006427 2.1e-47 195.7 1057 23.6
Sabra16G0161000 Salix brachista HOM05D005087 ORTHO05D006427 7.9e-47 193.7 1139 24.0
Haze_03133 Corylus avellana HOM05D005087 ORTHO05D006427 1.1e-45 189.9 1122 24.9
Haze_03136 Corylus avellana HOM05D005087 ORTHO05D006427 1.1e-45 189.9 1122 24.9
AUR62009415 Chenopodium quinoa HOM05D005087 ORTHO05D006427 3.1e-43 181.8 1096 23.5
PGR031G1517 Punica granatum HOM05D005087 ORTHO05D006427 6.9e-43 180.6 1119 23.2
Cfa027028 Carpinus fangiana HOM05D005087 ORTHO05D006427 1.5e-42 179.5 1174 23.4
EL10Ac2g04365 Beta vulgaris HOM05D005087 ORTHO05D006427 1.3e-38 166.4 944 24.9
Sc10g0000340 Simmondsia chinensis HOM05D005087 ORTHO05D006427 2.3e-38 165.6 1042 23.8
SEGI_04619 Sequoiadendron giganteum HOM05D005087 ORTHO05D006427 9.6e-37 160.2 206 44.7
Medtr5g036330 Medicago truncatula HOM05D005087 ORTHO05D006427 1.8e-35 156.0 175 44.0
Actinidia21540 Actinidia chinensis HOM05D005087 ORTHO05D006427 3.1e-35 155.2 144 52.8
Hma1.2p1_0685F.1_g203150 Hydrangea macrophylla HOM05D005087 ORTHO05D006427 2.9e-33 148.7 232 41.4
Zm00001eb225540 Zea mays HOM05D005087 ORTHO05D006427 1.2e-31 143.3 691 25.2
Nitab4.5_0002388g0080 Nicotiana tabacum HOM05D005087 ORTHO05D006427 3.3e-29 135.2 1021 21.8
Hma1.2p1_0685F.1_g203130 Hydrangea macrophylla HOM05D005087 ORTHO05D006427 5.7e-29 134.4 651 23.8
PSO384G1020 Papaver somniferum HOM05D005087 ORTHO05D006427 9.6e-29 133.7 134 49.3
Hma1.2p1_0685F.1_g203140 Hydrangea macrophylla HOM05D005087 ORTHO05D006427 6.2e-28 131.0 791 22.9
AagrBONN_evm.TU.Sc2ySwM_344.2054 Anthoceros agrestis HOM05D005087 ORTHO05D006427 4.1e-27 128.3 1003 22.3
SHI04084 Sapria himalayana HOM05D005087 ORTHO05D006427 5.3e-27 127.9 175 41.1
Oeu049480.1 Olea europaea HOM05D005087 ORTHO05D006427 5.8e-26 124.4 121 51.2
SHI04082 Sapria himalayana HOM05D005087 ORTHO05D006427 5.0e-25 121.3 666 22.7
MBI11_g23277_MAGBIO Magnolia biondii HOM05D005087 ORTHO05D006427 4.2e-24 118.2 759 22.7
Nitab4.5_0002388g0090 Nicotiana tabacum HOM05D005087 ORTHO05D006427 7.2e-24 117.5 82 65.9
vmacro21195 Vaccinium macrocarpon HOM05D005087 ORTHO05D006427 1.6e-23 116.3 713 22.7
Actinidia21541 Actinidia chinensis HOM05D005087 ORTHO05D006427 4.6e-23 114.8 889 23.4
CAN.G219.75 Capsicum annuum HOM05D005087 ORTHO05D006427 1.4e-19 103.2 936 21.8
SGA_v2.0_scaffold42G16189 Striga asiatica HOM05D005087 ORTHO05D006427 4.1e-19 101.7 658 22.9
HPP92_016892 Vanilla planifolia HOM05D001496 ORTHO05D007453 1.3e-17 96.7 286 25.5
Nitab4.5_0000707g0060 Nicotiana tabacum HOM05D005087 ORTHO05D006427 1.4e-14 86.7 58 67.2
Nitab4.5_0000707g0070 Nicotiana tabacum HOM05D005087 ORTHO05D006427 2.5e-13 82.4 1048 21.3
unitig_22.g5432 Utricularia gibba HOM05D005087 ORTHO05D006427 1.1e-11 77.0 479 23.4
SEGI_40819 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 5.9e-10 71.2 336 22.9
Hund09862 Selenicereus undatus HOM05D005087 ORTHO05D006427 2.2e-09 69.3 96 35.4
Medtr5g036300 Medicago truncatula HOM05D005087 ORTHO05D006427 3.8e-09 68.6 103 42.7
TAR623G1215 Trochodendron aralioides HOM05D005087 ORTHO05D006427 1.1e-08 67.0 94 35.1
Oeu049481.1 Olea europaea HOM05D005087 ORTHO05D006427 1.4e-08 66.6 92 37.0
Cc00_g23000 Coffea canephora HOM05D005087 ORTHO05D006427 7.2e-08 64.3 94 36.2
Os11g0572900 Oryza sativa ssp. japonica HOM05D005087 ORTHO05D006427 7.2e-08 64.3 86 38.4
SEGI_00270 Sequoiadendron giganteum HOM05D005087 ORTHO05D006427 7.2e-08 64.3 94 35.1
Hund09856 Selenicereus undatus HOM05D005087 ORTHO05D006427 9.4e-08 63.9 94 34.0
Aqoxy5G03870 Aquilegia oxysepala HOM05D004178 ORTHO05D005204 5.1e-06 58.2 84 41.7
AUR62015432 Chenopodium quinoa HOM05D004178 ORTHO05D005204 5.1e-06 58.2 78 39.7
EL10Ac2g04364 Beta vulgaris HOM05D005087 ORTHO05D006427 6.7e-06 57.8 113 30.1
arahy.Tifrunner.gnm1.ann1.D3FWW6 Arachis hypogaea HOM05D004178 ORTHO05D005204 8.8e-06 57.4 78 38.5
Gohir.A12G197800 Gossypium hirsutum HOM05D004178 ORTHO05D005204 8.8e-06 57.4 78 38.5
Gohir.D12G200300 Gossypium hirsutum HOM05D004178 ORTHO05D005204 8.8e-06 57.4 78 38.5
Gorai.008G215500 Gossypium raimondii HOM05D004178 ORTHO05D005204 8.8e-06 57.4 78 38.5
Lsat_1_v5_gn_9_51940 Lactuca sativa HOM05D004178 ORTHO05D005204 8.8e-06 57.4 75 41.3


User provided reference genes

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