Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 2.4e-189 666.4 690 100.0
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 1.6e-28 132.1 117 56.4
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 2.1e-28 131.7 164 43.9
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 1.1e-27 129.4 205 39.5
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 1.8e-27 128.6 213 39.4
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 3.1e-27 127.9 123 53.7
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 4.0e-27 127.5 123 54.5
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 6.8e-27 126.7 198 37.4
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 8.9e-27 126.3 201 40.8
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 8.9e-27 126.3 216 39.8
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 1.2e-26 125.9 123 52.0
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 1.2e-26 125.9 201 40.8
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 1.2e-26 125.9 201 40.3
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 1.5e-26 125.6 203 39.4
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 1.5e-26 125.6 203 39.4
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 1.5e-26 125.6 213 39.4
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 2.0e-26 125.2 123 51.2
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 2.6e-26 124.8 201 39.8
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 2.6e-26 124.8 123 52.0
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 2.6e-26 124.8 123 52.0
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 3.4e-26 124.4 120 53.3
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 3.4e-26 124.4 123 51.2
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 3.4e-26 124.4 123 52.0
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 3.4e-26 124.4 123 52.0
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 4.4e-26 124.0 165 42.4
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 4.4e-26 124.0 123 52.8
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 4.4e-26 124.0 123 52.0
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 4.4e-26 124.0 210 38.6
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 5.8e-26 123.6 123 52.0
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 5.8e-26 123.6 123 52.8
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 5.8e-26 123.6 123 50.4
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 7.6e-26 123.2 123 51.2
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 7.6e-26 123.2 124 51.6
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 7.6e-26 123.2 123 52.8
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 7.6e-26 123.2 201 39.8
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 7.6e-26 123.2 201 39.8
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 7.6e-26 123.2 123 52.0
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 7.6e-26 123.2 123 49.6
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 7.6e-26 123.2 195 40.0
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 7.6e-26 123.2 182 41.8
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 7.6e-26 123.2 123 51.2
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 7.6e-26 123.2 120 52.5
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 9.9e-26 122.9 123 51.2
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 9.9e-26 122.9 201 38.8
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 9.9e-26 122.9 200 39.5
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 9.9e-26 122.9 123 51.2
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 1.3e-25 122.5 120 52.5
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 1.3e-25 122.5 120 52.5
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 1.7e-25 122.1 123 51.2
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 1.7e-25 122.1 123 52.0
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 2.2e-25 121.7 124 51.6
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.2e-25 121.7 123 50.4
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 2.2e-25 121.7 123 51.2
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 2.2e-25 121.7 123 49.6
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 2.2e-25 121.7 123 50.4
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 2.9e-25 121.3 120 51.7
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 2.9e-25 121.3 120 51.7
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 2.9e-25 121.3 120 51.7
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 2.9e-25 121.3 123 52.0
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 2.9e-25 121.3 117 52.1
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 2.9e-25 121.3 123 51.2
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 2.9e-25 121.3 120 51.7
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 2.9e-25 121.3 123 52.0
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 2.9e-25 121.3 123 51.2
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 2.9e-25 121.3 221 38.5
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 3.8e-25 120.9 123 52.0
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 3.8e-25 120.9 123 51.2
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 4.9e-25 120.6 120 51.7
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 4.9e-25 120.6 123 51.2
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 4.9e-25 120.6 120 50.8
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 4.9e-25 120.6 120 50.8
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 4.9e-25 120.6 168 41.1
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 4.9e-25 120.6 200 41.5
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 6.4e-25 120.2 120 50.8
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 6.4e-25 120.2 120 50.8
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 6.4e-25 120.2 123 50.4
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 6.4e-25 120.2 201 39.3
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 8.4e-25 119.8 120 50.8
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 8.4e-25 119.8 201 39.8
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 8.4e-25 119.8 120 53.3
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 8.4e-25 119.8 175 40.6
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 8.4e-25 119.8 123 50.4
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 1.1e-24 119.4 203 39.4
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 1.1e-24 119.4 208 36.5
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 1.1e-24 119.4 210 38.6
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.4e-24 119.0 123 49.6
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 1.4e-24 119.0 120 50.8
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 1.9e-24 118.6 123 50.4
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 1.9e-24 118.6 120 50.0
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 1.9e-24 118.6 201 39.8
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 1.9e-24 118.6 123 50.4
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 1.9e-24 118.6 120 50.8
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 1.9e-24 118.6 123 49.6
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 1.9e-24 118.6 120 50.0
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 2.4e-24 118.2 195 36.9
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 2.4e-24 118.2 204 39.2
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 2.4e-24 118.2 123 49.6
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 3.2e-24 117.9 123 48.8
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 5.4e-24 117.1 123 48.8
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 7.1e-24 116.7 123 49.6
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 7.1e-24 116.7 166 42.8
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 2.7e-23 114.8 125 50.4
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 4.6e-23 114.0 123 48.8
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 4.6e-23 114.0 123 48.8
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 6.0e-23 113.6 206 36.9
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 3.9e-22 110.9 204 37.3
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 1.9e-21 108.6 233 33.9
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 1.6e-20 105.5 113 49.6
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 2.8e-20 104.8 121 47.1
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 8.9e-19 99.8 124 45.2
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.0e-18 98.6 196 36.2
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 2.6e-18 98.2 162 40.1
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 4.4e-18 97.4 158 39.9
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 5.8e-18 97.1 139 36.7
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 5.8e-18 97.1 117 41.9
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 9.9e-18 96.3 115 46.1
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 4.9e-17 94.0 123 43.1
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.4e-16 92.4 196 34.7
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 3.2e-16 91.3 159 35.2
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 1.2e-15 89.4 73 61.6
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 6.0e-15 87.0 78 50.0
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 7.8e-15 86.7 123 40.7
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 1.6e-12 79.0 77 53.2
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 1.8e-11 75.5 77 49.4
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 7.6e-10 70.1 77 46.8
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 2.2e-09 68.6 103 36.9
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 6.4e-09 67.0 206 28.6
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 7.1e-08 63.5 97 42.3
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 5.1e-06 57.4 93 39.8


User provided reference genes

Program Settings