Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre07.g346050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 7.9e-233 810.1 408 100.0
Cre12.g510050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 2.7e-156 555.8 393 70.2
MCO13G411 Micromonas commoda HOM05D004558 ORTHO05D005647 1.1e-141 507.3 345 71.3
PRCOL_00006479 Prasinoderma coloniale HOM05D004558 ORTHO05D005647 1.3e-139 500.4 352 68.2
Lalb_Chr24g0400681 Lupinus albus HOM05D004558 ORTHO05D005647 6.5e-134 481.5 369 64.2
SMO119G0375 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 1.4e-133 480.3 349 67.3
ATR1096G103 Amborella trichopoda HOM05D004558 ORTHO05D005647 5.5e-133 478.4 351 65.8
Cc06_g22740 Coffea canephora HOM05D004558 ORTHO05D005647 5.5e-133 478.4 382 62.0
THA.LOC104824384 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 5.5e-133 478.4 378 63.0
Eucgr.A02177 Eucalyptus grandis HOM05D004558 ORTHO05D005647 7.1e-133 478.0 376 63.6
Actinidia38207 Actinidia chinensis HOM05D004558 ORTHO05D005647 9.3e-133 477.6 346 67.1
THA.LOC104803235 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 1.6e-132 476.9 378 62.4
unitig_46.g18485 Utricularia gibba HOM05D004558 ORTHO05D005647 2.1e-132 476.5 380 62.6
Duzib093G1273 Durio zibethinus HOM05D004558 ORTHO05D005647 2.7e-132 476.1 384 63.0
Actinidia00883 Actinidia chinensis HOM05D004558 ORTHO05D005647 3.5e-132 475.7 344 67.2
ClCG04G004930 Citrullus lanatus HOM05D004558 ORTHO05D005647 4.6e-132 475.3 344 67.4
Prupe.7G022500 Prunus persica HOM05D004558 ORTHO05D005647 4.6e-132 475.3 369 64.0
SEGI_29193 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 6.0e-132 474.9 378 62.4
Sc19g0007850 Simmondsia chinensis HOM05D004558 ORTHO05D005647 6.0e-132 474.9 348 67.2
Cpa.g.sc92.57 Carica papaya HOM05D004558 ORTHO05D005647 7.9e-132 474.6 374 62.3
TWI53G2040 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 1.0e-131 474.2 372 62.4
Duzib128G1152 Durio zibethinus HOM05D004558 ORTHO05D005647 1.3e-131 473.8 344 66.9
TPR.G23197 Trifolium pratense HOM05D004558 ORTHO05D005647 1.3e-131 473.8 372 62.4
Lj1g0019045 Lotus japonicus HOM05D004558 ORTHO05D005647 1.8e-131 473.4 375 62.1
Sabra16G0030900 Salix brachista HOM05D004558 ORTHO05D005647 1.8e-131 473.4 372 62.6
GSVIVG01025841001 Vitis vinifera HOM05D004558 ORTHO05D005647 1.8e-131 473.4 353 64.9
BcaB02g07634 Brassica carinata HOM05D004558 ORTHO05D005647 2.3e-131 473.0 369 62.6
BcaC07g40007 Brassica carinata HOM05D004558 ORTHO05D005647 2.3e-131 473.0 379 61.2
A09p49810 Brassica napus HOM05D004558 ORTHO05D005647 2.3e-131 473.0 379 61.2
BraA09t40434Z Brassica rapa HOM05D004558 ORTHO05D005647 2.3e-131 473.0 379 61.2
Phvul.001G108700 Phaseolus vulgaris HOM05D004558 ORTHO05D005647 2.3e-131 473.0 369 62.9
Potri.016G025000 Populus trichocarpa HOM05D004558 ORTHO05D005647 2.3e-131 473.0 372 62.6
Thhalv10006009m.g Eutrema salsugineum HOM05D004558 ORTHO05D005647 3.0e-131 472.6 369 61.8
Gohir.A01G192400 Gossypium hirsutum HOM05D004558 ORTHO05D005647 3.0e-131 472.6 344 67.2
CsaV3_4G031720 Cucumis sativus L. HOM05D004558 ORTHO05D005647 3.9e-131 472.2 344 66.9
Hma1.2p1_0251F.1_g102500 Hydrangea macrophylla HOM05D004558 ORTHO05D005647 3.9e-131 472.2 346 66.2
QL07p015188 Quercus lobata HOM05D004558 ORTHO05D005647 3.9e-131 472.2 369 62.1
BcaC07g40105 Brassica carinata HOM05D004558 ORTHO05D005647 5.1e-131 471.9 379 61.5
Sed0025713 Sechium edule HOM05D004558 ORTHO05D005647 5.1e-131 471.9 379 62.3
Thecc.05G130200 Theobroma cacao HOM05D004558 ORTHO05D005647 5.1e-131 471.9 369 63.4
VMungo1383G3341 Vigna mungo HOM05D004558 ORTHO05D005647 5.1e-131 471.9 369 63.4
BcaC08g44811 Brassica carinata HOM05D004558 ORTHO05D005647 6.7e-131 471.5 369 62.3
A07p23140 Brassica napus HOM05D004558 ORTHO05D005647 6.7e-131 471.5 369 62.3
BraA07t29976Z Brassica rapa HOM05D004558 ORTHO05D005647 6.7e-131 471.5 369 62.3
Migut.K00174 Erythranthe guttata HOM05D004558 ORTHO05D005647 6.7e-131 471.5 371 63.1
Hund24509 Selenicereus undatus HOM05D004558 ORTHO05D005647 6.7e-131 471.5 344 67.2
HPP92_000696 Vanilla planifolia HOM05D004558 ORTHO05D005647 6.7e-131 471.5 344 66.9
Aqoxy2G00035_Aqoxy2G00036 Aquilegia oxysepala HOM05D004558 ORTHO05D005647 8.7e-131 471.1 380 62.6
BolC6t37555H Brassica oleracea HOM05D004558 ORTHO05D005647 8.7e-131 471.1 369 62.3
DCAR_013513 Daucus carota HOM05D004558 ORTHO05D005647 8.7e-131 471.1 375 62.1
Lsat_1_v5_gn_9_30221 Lactuca sativa HOM05D004558 ORTHO05D005647 1.1e-130 470.7 383 62.1
Medtr7g088340 Medicago truncatula HOM05D004558 ORTHO05D005647 1.1e-130 470.7 372 62.4
AUR62020990 Chenopodium quinoa HOM05D004558 ORTHO05D005647 1.5e-130 470.3 375 61.6
MSTRG.6287 Avicennia marina HOM05D004558 ORTHO05D005647 1.9e-130 469.9 344 66.3
CAN.G959.37 Capsicum annuum HOM05D004558 ORTHO05D005647 1.9e-130 469.9 368 63.3
Glyma.03G119500 Glycine max HOM05D004558 ORTHO05D005647 2.5e-130 469.5 340 66.8
Gohir.D01G177500 Gossypium hirsutum HOM05D004558 ORTHO05D005647 2.5e-130 469.5 340 67.4
TAR369G0680 Trochodendron aralioides HOM05D004558 ORTHO05D005647 2.5e-130 469.5 344 66.3
RcHm_v2.0_Chr3g0494361 Rosa chinensis HOM05D004558 ORTHO05D005647 3.3e-130 469.2 350 65.4
vmacro08967 Vaccinium macrocarpon HOM05D004558 ORTHO05D005647 3.3e-130 469.2 384 61.2
Aa31LG10G11840 Aethionema arabicum HOM05D004558 ORTHO05D005647 4.3e-130 468.8 369 62.1
arahy.Tifrunner.gnm1.ann1.VDKY5W Arachis hypogaea HOM05D004558 ORTHO05D005647 4.3e-130 468.8 344 65.7
arahy.Tifrunner.gnm1.ann1.XE2WF0 Arachis hypogaea HOM05D004558 ORTHO05D005647 4.3e-130 468.8 344 65.7
CARHR167090 Cardamine hirsuta HOM05D004558 ORTHO05D005647 4.3e-130 468.8 369 62.1
CiPaw.09G162600 Carya illinoinensis HOM05D004558 ORTHO05D005647 4.3e-130 468.8 369 62.3
AUR62018443 Chenopodium quinoa HOM05D004558 ORTHO05D005647 4.3e-130 468.8 375 61.6
Nitab4.5_0001270g0120 Nicotiana tabacum HOM05D004558 ORTHO05D005647 4.3e-130 468.8 368 63.0
Sopen10g028720 Solanum pennellii HOM05D004558 ORTHO05D005647 4.3e-130 468.8 340 67.4
CSS0026074 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 5.7e-130 468.4 344 65.7
CSS0045826 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 5.7e-130 468.4 344 65.7
Rhsim04G0119100 Rhododendron simsii HOM05D004558 ORTHO05D005647 5.7e-130 468.4 340 66.5
TAR546G0001 Trochodendron aralioides HOM05D004558 ORTHO05D005647 5.7e-130 468.4 344 66.3
Carub.0005s2368 Capsella rubella HOM05D004558 ORTHO05D005647 7.4e-130 468.0 369 62.1
Manes.09G073800 Manihot esculenta HOM05D004558 ORTHO05D005647 7.4e-130 468.0 369 62.6
PGSC0003DMG400007188 Solanum tuberosum HOM05D004558 ORTHO05D005647 7.4e-130 468.0 340 67.4
SGA_v2.0_scaffold66G22316 Striga asiatica HOM05D004558 ORTHO05D005647 7.4e-130 468.0 350 64.9
AagrBONN_evm.TU.Sc2ySwM_228.50 Anthoceros agrestis HOM05D004558 ORTHO05D005647 9.7e-130 467.6 346 64.2
Cfa019915 Carpinus fangiana HOM05D004558 ORTHO05D005647 9.7e-130 467.6 372 61.8
DCAR_016944 Daucus carota HOM05D004558 ORTHO05D005647 9.7e-130 467.6 346 65.3
Nitab4.5_0000123g0170 Nicotiana tabacum HOM05D004558 ORTHO05D005647 9.7e-130 467.6 368 63.0
Solyc10g077040.2 Solanum lycopersicum HOM05D004558 ORTHO05D005647 9.7e-130 467.6 340 67.4
Zm00001eb129000 Zea mays HOM05D004558 ORTHO05D005647 9.7e-130 467.6 387 61.5
Mapoly0124s0017 Marchantia polymorpha HOM05D004558 ORTHO05D005647 1.3e-129 467.2 380 61.3
TWI77G0093 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 1.3e-129 467.2 369 62.1
Ciclev10011842m.g Citrus clementina HOM05D004558 ORTHO05D005647 1.6e-129 466.8 371 62.0
Sabra06G0020200 Salix brachista HOM05D004558 ORTHO05D005647 1.6e-129 466.8 372 61.6
Haze_20335 Corylus avellana HOM05D004558 ORTHO05D005647 2.2e-129 466.5 372 61.8
ECA247G1747 Erigeron canadensis HOM05D004558 ORTHO05D005647 2.8e-129 466.1 371 62.3
FAN19G1019 Fragaria x ananassa HOM05D004558 ORTHO05D005647 2.8e-129 466.1 367 62.9
Lalb_Chr14g0365301 Lupinus albus HOM05D004558 ORTHO05D005647 2.8e-129 466.1 369 61.5
Potri.006G027300 Populus trichocarpa HOM05D004558 ORTHO05D005647 2.8e-129 466.1 372 61.8
Sp5g05650 Schrenkiella parvula HOM05D004558 ORTHO05D005647 2.8e-129 466.1 382 61.0
FvH4_1g28960 Fragaria vesca HOM05D004558 ORTHO05D005647 3.7e-129 465.7 367 62.9
FAN26G0634 Fragaria x ananassa HOM05D004558 ORTHO05D005647 4.8e-129 465.3 344 66.0
Zm00001eb332650 Zea mays HOM05D004558 ORTHO05D005647 4.8e-129 465.3 379 62.3
CDE02G2354 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 6.3e-129 464.9 385 60.5
FAN23G1063 Fragaria x ananassa HOM05D004558 ORTHO05D005647 6.3e-129 464.9 344 66.0
HanXRQChr10g0291961 Helianthus annuus HOM05D004558 ORTHO05D005647 6.3e-129 464.9 373 62.5
Oeu060750.2 Olea europaea HOM05D004558 ORTHO05D005647 6.3e-129 464.9 354 65.0
Pp3c11_7910 Physcomitrium patens HOM05D004558 ORTHO05D005647 6.3e-129 464.9 399 60.4
PSO339G0825 Papaver somniferum HOM05D004558 ORTHO05D005647 8.2e-129 464.5 344 65.7
PSO384G3158 Papaver somniferum HOM05D004558 ORTHO05D005647 8.2e-129 464.5 344 65.7
PGR042G2423 Punica granatum HOM05D004558 ORTHO05D005647 8.2e-129 464.5 387 61.0
unitig_37.g12773 Utricularia gibba HOM05D004558 ORTHO05D005647 8.2e-129 464.5 347 65.1
AL5G38370 Arabidopsis lyrata HOM05D004558 ORTHO05D005647 1.1e-128 464.2 369 61.8
Os01g0279100 Oryza sativa ssp. japonica HOM05D004558 ORTHO05D005647 1.1e-128 464.2 384 61.5
FAN28G2842 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.4e-128 463.8 344 66.0
MBI13_g30268_MAGBIO Magnolia biondii HOM05D004558 ORTHO05D005647 1.4e-128 463.8 344 65.7
CANSAT78G1575 Cannabis sativa HOM05D004558 ORTHO05D005647 1.8e-128 463.4 373 62.5
Lj1A1078T64 Lonicera japonica HOM05D004558 ORTHO05D005647 3.1e-128 462.6 339 66.4
Gorai.002G225700 Gossypium raimondii HOM05D004558 ORTHO05D005647 5.3e-128 461.8 349 65.6
C06p23840 Brassica napus HOM05D004558 ORTHO05D005647 3.4e-127 459.1 373 61.1
Rhsim04G0119000 Rhododendron simsii HOM05D004558 ORTHO05D005647 4.5e-127 458.8 354 63.8
Oeu023011.1 Olea europaea HOM05D004558 ORTHO05D005647 1.0e-126 457.6 357 63.0
Peaxi162Scf00003g05355 Petunia axillaris HOM05D004558 ORTHO05D005647 1.1e-125 454.1 361 62.9
Atru.chr1.1539 Acer truncatum HOM05D004558 ORTHO05D005647 1.4e-120 437.2 283 72.4
AT3G56940 Arabidopsis thaliana HOM05D004558 ORTHO05D005647 1.3e-118 430.6 324 65.1
Psat3g082520 Pisum sativum HOM05D004558 ORTHO05D005647 4.7e-116 422.2 297 69.0
Ca_08344_v3 Cicer arietinum L. HOM05D004558 ORTHO05D005647 7.9e-116 421.4 305 66.6
Dinv11638 Davidia involucrata HOM05D004558 ORTHO05D005647 2.2e-113 413.3 261 74.3
Pp3c7_26570 Physcomitrium patens HOM05D004558 ORTHO05D005647 8.2e-113 411.4 322 65.2
HPP92_000650 Vanilla planifolia HOM05D004558 ORTHO05D005647 1.4e-112 410.6 257 74.7
CDE04G3757 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 2.0e-111 406.8 386 55.2
EL10Ac3g07349 Beta vulgaris HOM05D004558 ORTHO05D005647 8.5e-110 401.4 348 58.3
SGA_v2.0_scaffold69G23196 Striga asiatica HOM05D004558 ORTHO05D005647 1.8e-107 393.7 373 55.0
SMO115G0161 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 1.2e-100 370.9 349 54.4
MELO3C026802.2 Cucumis melo HOM05D004558 ORTHO05D005647 3.6e-100 369.4 233 75.5
Glyma.19G123800 Glycine max HOM05D004558 ORTHO05D005647 1.4e-99 367.5 229 75.5
CDE02G0342 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.0e-94 351.3 228 72.4
CBR_g50688 Chara braunii HOM05D004558 ORTHO05D005647 1.7e-94 350.5 266 65.0
Ah.04g150190 Amaranthus hybridus HOM05D004558 ORTHO05D005647 2.0e-87 327.0 348 50.6
SalBow6G0122 Salvia bowleyana HOM05D004558 ORTHO05D005647 1.7e-81 307.4 238 62.6
SalBow1G4785 Salvia bowleyana HOM05D004558 ORTHO05D005647 8.6e-78 295.0 276 56.5
Oeu021019.1 Olea europaea HOM05D004558 ORTHO05D005647 3.1e-67 260.0 265 52.1
CBR_g55376 Chara braunii HOM05D004558 ORTHO05D005647 9.9e-42 175.3 154 61.0
Pp3c2_30650 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.9e-29 134.4 104 64.4
BolC4t25242H Brassica oleracea HOM05D004558 ORTHO05D005647 2.6e-26 124.0 123 49.6
C04p35620 Brassica napus HOM05D004558 ORTHO05D005647 3.4e-26 123.6 123 48.8
Ah.13g077400 Amaranthus hybridus HOM05D004558 ORTHO05D000435 2.4e-19 100.9 117 47.0
SEGI_20922 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 5.8e-18 96.3 109 43.1
SEGI_05566 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 7.6e-18 95.9 109 43.1
Lalb_Chr22g0357681 Lupinus albus HOM05D004558 ORTHO05D005647 1.3e-17 95.1 97 50.5
ClCG10G010310 Citrullus lanatus HOM05D004558 ORTHO05D005647 1.1e-16 92.0 71 56.3
AagrBONN_evm.TU.Sc2ySwM_368.2127 Anthoceros agrestis HOM05D004558 ORTHO05D005647 2.5e-16 90.9 63 66.7
AagrBONN_evm.TU.Sc2ySwM_344.4282 Anthoceros agrestis HOM05D004558 ORTHO05D000003 5.7e-13 79.7 66 60.6
A04p03620 Brassica napus HOM05D004558 ORTHO05D005647 2.2e-12 77.8 94 42.6
C08p32210 Brassica napus HOM05D004558 ORTHO05D005647 2.2e-12 77.8 94 42.6
BraA04t16073Z Brassica rapa HOM05D004558 ORTHO05D005647 2.2e-12 77.8 94 42.6
Lalb_Chr22g0358091 Lupinus albus HOM05D004558 ORTHO05D005647 2.2e-12 77.8 47 68.1
SEGI_00644 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 1.7e-09 68.2 42 78.6
BcaC02g09879 Brassica carinata HOM05D004558 ORTHO05D005647 1.9e-08 64.7 84 40.5
CDE02G4696 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 9.4e-08 62.4 84 41.7
Lalb_Chr22g0358081 Lupinus albus HOM05D004558 ORTHO05D005647 1.8e-06 58.2 39 71.8


User provided reference genes

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