Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre06.g280150 Chlamydomonas reinhardtii HOM05D007080 ORTHO05D008990 2.5e-130 468.8 232 100.0
Peaxi162Scf00076g00226 Petunia axillaris HOM05D007080 ORTHO05D008990 1.5e-47 193.7 222 44.6
Nitab4.5_0006059g0030 Nicotiana tabacum HOM05D007080 ORTHO05D008990 4.5e-47 192.2 216 45.8
ATR0307G091 Amborella trichopoda HOM05D007080 ORTHO05D008990 7.6e-47 191.4 197 46.2
Nitab4.5_0003160g0050 Nicotiana tabacum HOM05D007080 ORTHO05D008990 7.6e-47 191.4 216 45.8
Ca_08357_v3 Cicer arietinum L. HOM05D007080 ORTHO05D008990 1.3e-46 190.7 217 44.2
Glyma.03G123100 Glycine max HOM05D007080 ORTHO05D008990 1.7e-46 190.3 214 46.3
Medtr7g088880 Medicago truncatula HOM05D007080 ORTHO05D008990 2.2e-46 189.9 211 43.6
Sopen06g023980 Solanum pennellii HOM05D007080 ORTHO05D008990 3.8e-46 189.1 213 44.1
TPR.G22690 Trifolium pratense HOM05D007080 ORTHO05D008990 4.9e-46 188.7 209 43.1
Manes.09G000200 Manihot esculenta HOM05D007080 ORTHO05D008990 6.4e-46 188.3 209 44.5
HPP92_016890 Vanilla planifolia HOM05D007080 ORTHO05D008990 6.4e-46 188.3 211 45.5
VMungo1383G2155 Vigna mungo HOM05D007080 ORTHO05D008990 8.4e-46 188.0 214 45.3
AagrBONN_evm.TU.Sc2ySwM_228.1885 Anthoceros agrestis HOM05D007080 ORTHO05D008990 1.1e-45 187.6 198 46.0
Psat0s1940g0160 Pisum sativum HOM05D007080 ORTHO05D008990 1.1e-45 187.6 213 42.7
SGA_v2.0_scaffold240G44138 Striga asiatica HOM05D007080 ORTHO05D008990 1.1e-45 187.6 212 43.9
Solyc06g065490.3 Solanum lycopersicum HOM05D007080 ORTHO05D008990 1.4e-45 187.2 213 43.7
Migut.K00153 Erythranthe guttata HOM05D007080 ORTHO05D008990 1.9e-45 186.8 199 45.7
Eucgr.K01671 Eucalyptus grandis HOM05D007080 ORTHO05D008990 1.9e-45 186.8 212 44.8
Phvul.001G119100 Phaseolus vulgaris HOM05D007080 ORTHO05D008990 1.9e-45 186.8 213 44.1
SalBow1G6984 Salvia bowleyana HOM05D007080 ORTHO05D008990 1.9e-45 186.8 217 42.9
PGSC0003DMG400026121 Solanum tuberosum HOM05D007080 ORTHO05D008990 2.4e-45 186.4 213 43.2
Glyma.19G126700 Glycine max HOM05D007080 ORTHO05D008990 3.2e-45 186.0 219 44.7
PGR142G4038 Punica granatum HOM05D007080 ORTHO05D008990 3.2e-45 186.0 199 46.2
CAN.G199.26 Capsicum annuum HOM05D007080 ORTHO05D008990 4.2e-45 185.7 214 44.4
Os01g0805300 Oryza sativa ssp. japonica HOM05D007080 ORTHO05D008990 7.1e-45 184.9 199 47.7
Zm00001eb150500 Zea mays HOM05D007080 ORTHO05D008990 7.1e-45 184.9 213 45.1
Lalb_Chr14g0365571 Lupinus albus HOM05D007080 ORTHO05D008990 9.3e-45 184.5 212 43.4
Actinidia17969 Actinidia chinensis HOM05D007080 ORTHO05D008990 1.2e-44 184.1 213 44.6
RhsimUnG0018800 Rhododendron simsii HOM05D007080 ORTHO05D008990 1.2e-44 184.1 215 43.3
CANSAT54G2774 Cannabis sativa HOM05D007080 ORTHO05D008990 1.6e-44 183.7 215 43.7
unitig_746.g26555 Utricularia gibba HOM05D007080 ORTHO05D008990 1.6e-44 183.7 227 41.4
GSVIVG01025792001 Vitis vinifera HOM05D007080 ORTHO05D008990 1.6e-44 183.7 212 43.9
Cpa.g.sc52.82 Carica papaya HOM05D007080 ORTHO05D008990 2.1e-44 183.3 199 45.7
AUR62030277 Chenopodium quinoa HOM05D007080 ORTHO05D008990 2.1e-44 183.3 213 42.3
MD03G1200900 Malus domestica HOM05D007080 ORTHO05D008990 2.1e-44 183.3 196 45.4
Aqoxy1G00077 Aquilegia oxysepala HOM05D007080 ORTHO05D008990 2.7e-44 183.0 211 43.1
MELO3C005006.2 Cucumis melo HOM05D007080 ORTHO05D008990 2.7e-44 183.0 211 43.6
SMO347G0313 Selaginella moellendorffii HOM05D007080 ORTHO05D008990 2.7e-44 183.0 206 44.2
CsaV3_1G013070 Cucumis sativus L. HOM05D007080 ORTHO05D008990 3.5e-44 182.6 198 44.9
Sed0014766 Sechium edule HOM05D007080 ORTHO05D008990 3.5e-44 182.6 211 43.6
Nn7g36949 Nelumbo nucifera HOM05D007080 ORTHO05D008990 4.6e-44 182.2 213 42.7
Sabra06G0022700 Salix brachista HOM05D007080 ORTHO05D008990 4.6e-44 182.2 209 43.5
vmacro07766 Vaccinium macrocarpon HOM05D007080 ORTHO05D008990 4.6e-44 182.2 215 42.8
Cc06_g20190 Coffea canephora HOM05D007080 ORTHO05D008990 6.0e-44 181.8 213 42.7
Pp3c4_10510 Physcomitrium patens HOM05D007080 ORTHO05D008990 6.0e-44 181.8 196 44.9
Dinv36121 Davidia involucrata HOM05D007080 ORTHO05D008990 7.9e-44 181.4 208 44.2
Lj1g0027963 Lotus japonicus HOM05D007080 ORTHO05D008990 7.9e-44 181.4 212 42.0
RcHm_v2.0_Chr3g0492661 Rosa chinensis HOM05D007080 ORTHO05D008990 7.9e-44 181.4 214 43.9
MSTRG.26172 Avicennia marina HOM05D007080 ORTHO05D008990 1.3e-43 180.6 217 41.9
Potri.006G034300 Populus trichocarpa HOM05D007080 ORTHO05D008990 1.3e-43 180.6 209 43.1
RhsimUnG0209400 Rhododendron simsii HOM05D007080 ORTHO05D008990 1.8e-43 180.3 213 42.3
arahy.Tifrunner.gnm1.ann1.10W9XD Arachis hypogaea HOM05D007080 ORTHO05D008990 2.3e-43 179.9 210 43.3
Duzib106G1879 Durio zibethinus HOM05D007080 ORTHO05D008990 3.0e-43 179.5 212 42.0
Cfa017504 Carpinus fangiana HOM05D007080 ORTHO05D008990 3.9e-43 179.1 215 42.3
Haze_11136 Corylus avellana HOM05D007080 ORTHO05D008990 3.9e-43 179.1 215 42.3
Atru.chr1.1289 Acer truncatum HOM05D007080 ORTHO05D008990 5.1e-43 178.7 202 43.6
A04p03450 Brassica napus HOM05D007080 ORTHO05D008990 5.1e-43 178.7 213 41.8
BraA04t16092Z Brassica rapa HOM05D007080 ORTHO05D008990 5.1e-43 178.7 213 41.8
CiPaw.10G043000 Carya illinoinensis HOM05D007080 ORTHO05D008990 5.1e-43 178.7 214 43.5
Thhalv10006177m.g Eutrema salsugineum HOM05D007080 ORTHO05D008990 5.1e-43 178.7 217 41.0
Hund24550 Selenicereus undatus HOM05D007080 ORTHO05D008990 5.1e-43 178.7 202 43.1
EL10Ac3g07276 Beta vulgaris HOM05D007080 ORTHO05D008990 6.7e-43 178.3 213 42.7
Carub.0005s2340 Capsella rubella HOM05D007080 ORTHO05D008990 6.7e-43 178.3 217 41.5
PSO339G0420 Papaver somniferum HOM05D007080 ORTHO05D008990 6.7e-43 178.3 199 43.7
PSO384G3013 Papaver somniferum HOM05D007080 ORTHO05D008990 6.7e-43 178.3 199 43.7
AL5G38020 Arabidopsis lyrata HOM05D007080 ORTHO05D008990 8.7e-43 177.9 217 41.0
BcaC02g09857 Brassica carinata HOM05D007080 ORTHO05D008990 8.7e-43 177.9 213 41.3
C04p35850 Brassica napus HOM05D007080 ORTHO05D008990 8.7e-43 177.9 213 41.3
BolC4t25215H Brassica oleracea HOM05D007080 ORTHO05D008990 8.7e-43 177.9 213 41.3
FvH4_1g28660 Fragaria vesca HOM05D007080 ORTHO05D008990 8.7e-43 177.9 213 42.7
FAN19G3092 Fragaria x ananassa HOM05D007080 ORTHO05D008990 8.7e-43 177.9 213 42.7
Gohir.D13G111900 Gossypium hirsutum HOM05D007080 ORTHO05D008990 8.7e-43 177.9 214 42.1
Lsat_1_v5_gn_5_157760 Lactuca sativa HOM05D007080 ORTHO05D008990 8.7e-43 177.9 202 42.6
QL07p012806 Quercus lobata HOM05D007080 ORTHO05D008990 8.7e-43 177.9 198 45.5
TWI74G1494 Tripterygium wilfordii HOM05D007080 ORTHO05D008990 8.7e-43 177.9 229 40.6
arahy.Tifrunner.gnm1.ann1.A7U9PP Arachis hypogaea HOM05D007080 ORTHO05D008990 1.1e-42 177.6 238 42.0
BcaB02g08359 Brassica carinata HOM05D007080 ORTHO05D008990 1.1e-42 177.6 213 41.8
Gorai.013G125600 Gossypium raimondii HOM05D007080 ORTHO05D008990 1.1e-42 177.6 214 42.1
Ah.04g150700 Amaranthus hybridus HOM05D007080 ORTHO05D008990 1.5e-42 177.2 213 42.3
CSS0023915 Camellia sinensis var. sinensis HOM05D007080 ORTHO05D008990 1.5e-42 177.2 210 43.3
CSS0031106 Camellia sinensis var. sinensis HOM05D007080 ORTHO05D008990 1.5e-42 177.2 210 43.3
Ciclev10012378m.g Citrus clementina HOM05D007080 ORTHO05D008990 1.5e-42 177.2 199 43.2
Gohir.A13G109100 Gossypium hirsutum HOM05D007080 ORTHO05D008990 1.5e-42 177.2 211 41.7
AT3G56650 Arabidopsis thaliana HOM05D007080 ORTHO05D008990 1.9e-42 176.8 218 42.7
Thecc.05G122900 Theobroma cacao HOM05D007080 ORTHO05D008990 1.9e-42 176.8 211 41.7
TAR623G1372 Trochodendron aralioides HOM05D007080 ORTHO05D008990 2.5e-42 176.4 212 41.5
ECA248G2633 Erigeron canadensis HOM05D007080 ORTHO05D008990 3.3e-42 176.0 221 42.1
Aa31LG10G11470 Aethionema arabicum HOM05D007080 ORTHO05D008990 5.6e-42 175.3 214 41.6
FAN26G2541 Fragaria x ananassa HOM05D007080 ORTHO05D008990 9.6e-42 174.5 213 42.3
AUR62018386 Chenopodium quinoa HOM05D007080 ORTHO05D008990 1.6e-41 173.7 217 39.6
Prupe.4G213200 Prunus persica HOM05D007080 ORTHO05D008990 2.1e-41 173.3 233 39.9
THA.LOC104801692 Tarenaya hassleriana HOM05D007080 ORTHO05D008990 4.8e-41 172.2 243 38.7
CBR_g17613 Chara braunii HOM05D007080 ORTHO05D008990 6.2e-41 171.8 238 37.8
Mapoly0008s0145 Marchantia polymorpha HOM05D007080 ORTHO05D008990 1.8e-40 170.2 229 40.2
FAN28G0517 Fragaria x ananassa HOM05D007080 ORTHO05D008990 5.3e-40 168.7 231 39.8
ClCG03G002390 Citrullus lanatus HOM05D007080 ORTHO05D008990 2.0e-39 166.8 227 37.9
QL07p012688 Quercus lobata HOM05D007080 ORTHO05D008990 4.5e-39 165.6 227 39.2
Lj1A1084T69 Lonicera japonica HOM05D007080 ORTHO05D008990 4.6e-36 155.6 170 41.2
CARHR166760 Cardamine hirsuta HOM05D007080 ORTHO05D008990 1.8e-35 153.7 167 40.7
CDE02G2515 Ceratophyllum demersum HOM05D007080 ORTHO05D008990 8.7e-35 151.4 155 45.2
MCO01G253 Micromonas commoda HOM05D007080 ORTHO05D008990 3.3e-34 149.4 204 40.2
PRCOL_00005035 Prasinoderma coloniale HOM05D007080 ORTHO05D008990 1.8e-32 143.7 221 38.5
RcHm_v2.0_Chr3g0492671 Rosa chinensis HOM05D007080 ORTHO05D008990 5.3e-32 142.1 160 40.6
COL.COLO4_19390 Corchorus olitorius HOM05D007080 ORTHO05D008990 7.1e-29 131.7 156 41.7
Pp3c1_24790 Physcomitrium patens HOM05D006773 ORTHO05D008775 6.1e-12 75.5 164 31.7
CDE08G0245 Ceratophyllum demersum HOM05D007080 ORTHO05D008990 2.3e-11 73.6 94 39.4
Mapoly0002s0218 Marchantia polymorpha HOM05D006773 ORTHO05D008775 3.0e-11 73.2 164 29.3
AagrBONN_evm.TU.Sc2ySwM_344.1575 Anthoceros agrestis HOM05D006773 ORTHO05D008775 6.7e-11 72.0 162 31.5
BcaC08g47206 Brassica carinata HOM05D006773 ORTHO05D008775 5.7e-10 68.9 160 28.1
A07p42660 Brassica napus HOM05D006773 ORTHO05D008775 5.7e-10 68.9 160 28.1
C06p51250 Brassica napus HOM05D006773 ORTHO05D008775 5.7e-10 68.9 160 28.1
BraA07t31788Z Brassica rapa HOM05D006773 ORTHO05D008775 5.7e-10 68.9 160 28.1
Mapoly0040s0096 Marchantia polymorpha HOM05D002933 ORTHO05D007742 6.3e-09 65.5 230 25.2
ClCG09G009710 Citrullus lanatus HOM05D006773 ORTHO05D008775 1.8e-08 63.9 160 28.1
Solyc03g114930.3 Solanum lycopersicum HOM05D002933 ORTHO05D007742 2.4e-08 63.5 131 26.7
Sopen03g034010 Solanum pennellii HOM05D002933 ORTHO05D007742 2.4e-08 63.5 131 26.7
Medtr7g023290 Medicago truncatula HOM05D002933 ORTHO05D007742 5.3e-08 62.4 131 26.0
PGSC0003DMG400024531 Solanum tuberosum HOM05D002933 ORTHO05D007742 5.3e-08 62.4 131 27.5
Eucgr.G02904 Eucalyptus grandis HOM05D002933 ORTHO05D007742 7.0e-08 62.0 131 26.7
FAN03G0329 Fragaria x ananassa HOM05D002933 ORTHO05D007742 1.2e-07 61.2 131 26.7
FvH4_7g21370 Fragaria vesca HOM05D002933 ORTHO05D007742 2.0e-07 60.5 131 26.7
FAN01G1038 Fragaria x ananassa HOM05D002933 ORTHO05D007742 2.0e-07 60.5 131 26.7
FAN06G1816 Fragaria x ananassa HOM05D002933 ORTHO05D007742 2.0e-07 60.5 131 26.7
FAN06G3199 Fragaria x ananassa HOM05D002933 ORTHO05D007742 2.0e-07 60.5 131 26.7
FAN10G2797 Fragaria x ananassa HOM05D002933 ORTHO05D007742 2.0e-07 60.5 131 26.7
CDE04G2678 Ceratophyllum demersum HOM05D002933 ORTHO05D007742 2.6e-07 60.1 131 26.7
Ca_07202_v3 Cicer arietinum L. HOM05D002933 ORTHO05D007742 2.6e-07 60.1 131 25.2
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 2.6e-07 60.1 131 24.4
Rhsim12G0149400 Rhododendron simsii HOM05D002933 ORTHO05D007742 3.4e-07 59.7 131 25.2
Actinidia35046 Actinidia chinensis HOM05D002933 ORTHO05D007742 4.5e-07 59.3 131 26.0
Ciclev10032564m.g Citrus clementina HOM05D002933 ORTHO05D007742 5.9e-07 58.9 131 26.0
ECA246G3602 Erigeron canadensis HOM05D002933 ORTHO05D007742 5.9e-07 58.9 131 23.7
Hma1.2p1_1246F.1_g270150 Hydrangea macrophylla HOM05D007080 ORTHO05D008990 5.9e-07 58.9 55 45.5
Psat6g169400 Pisum sativum HOM05D002933 ORTHO05D007742 5.9e-07 58.9 131 23.7
RcHm_v2.0_Chr1g0365751 Rosa chinensis HOM05D002933 ORTHO05D007742 5.9e-07 58.9 131 26.0
Sc19g0007980 Simmondsia chinensis HOM05D007080 ORTHO05D008990 5.9e-07 58.9 71 35.2
TPR.G15514 Trifolium pratense HOM05D002933 ORTHO05D007742 5.9e-07 58.9 133 27.8
arahy.Tifrunner.gnm1.ann1.55TXVJ Arachis hypogaea HOM05D002933 ORTHO05D007742 1.0e-06 58.2 131 22.9
arahy.Tifrunner.gnm1.ann1.XEQF22 Arachis hypogaea HOM05D002933 ORTHO05D007742 1.0e-06 58.2 131 22.9
COL.COLO4_14919 Corchorus olitorius HOM05D002933 ORTHO05D007742 1.0e-06 58.2 131 26.0
HanXRQChr05g0154341 Helianthus annuus HOM05D002933 ORTHO05D007742 1.0e-06 58.2 131 24.4
Actinidia18978 Actinidia chinensis HOM05D002933 ORTHO05D007742 1.7e-06 57.4 130 25.4
SEGI_36156 Sequoiadendron giganteum HOM05D002933 ORTHO05D007742 2.2e-06 57.0 129 24.8
HPP92_004480 Vanilla planifolia HOM05D006773 ORTHO05D008775 2.9e-06 56.6 96 35.4
EL10Ac5g11164 Beta vulgaris HOM05D002933 ORTHO05D007742 6.5e-06 55.5 131 26.0
Prupe.2G229000 Prunus persica HOM05D002933 ORTHO05D007742 8.5e-06 55.1 131 23.7


User provided reference genes

Program Settings