Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre06.g258100 Chlamydomonas reinhardtii HOM05D000283 ORTHO05D005391 0.0e+00 1550.0 957 100.0
CSS0009141 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 5.3e-54 217.2 345 37.7
Aqoxy5G01311 Aquilegia oxysepala HOM05D000283 ORTHO05D005391 1.3e-52 212.6 341 37.0
BraA04t18452Z Brassica rapa HOM05D000283 ORTHO05D005391 2.9e-52 211.5 341 36.7
MSTRG.311 Avicennia marina HOM05D000283 ORTHO05D005391 3.8e-52 211.1 341 38.4
A04p30550 Brassica napus HOM05D000283 ORTHO05D005391 3.8e-52 211.1 341 36.7
Eucgr.G02777 Eucalyptus grandis HOM05D000283 ORTHO05D005391 3.8e-52 211.1 342 37.7
Gohir.A10G208900 Gossypium hirsutum HOM05D000283 ORTHO05D005391 5.0e-52 210.7 341 37.5
BcaC02g07413 Brassica carinata HOM05D000283 ORTHO05D005391 8.5e-52 209.9 341 36.7
C04p67220 Brassica napus HOM05D000283 ORTHO05D005391 8.5e-52 209.9 341 36.7
BolC4t28220H Brassica oleracea HOM05D000283 ORTHO05D005391 8.5e-52 209.9 341 36.7
CDE02G4519 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 1.1e-51 209.5 341 37.2
HanXRQChr15g0496771 Helianthus annuus HOM05D000283 ORTHO05D005391 1.1e-51 209.5 342 37.7
CDE09G1073 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 3.2e-51 208.0 341 37.5
Gohir.D10G217200 Gossypium hirsutum HOM05D000283 ORTHO05D005391 3.2e-51 208.0 341 37.2
Gorai.011G242800 Gossypium raimondii HOM05D000283 ORTHO05D005391 3.2e-51 208.0 341 37.2
Ca_10211_v3 Cicer arietinum L. HOM05D000283 ORTHO05D005391 5.5e-51 207.2 341 35.5
Duzib128G1699 Durio zibethinus HOM05D000283 ORTHO05D005391 7.2e-51 206.8 341 37.0
Sp4g21650 Schrenkiella parvula HOM05D000283 ORTHO05D005391 7.2e-51 206.8 341 35.8
SpUn0018_0020 Schrenkiella parvula HOM05D000283 ORTHO05D005391 7.2e-51 206.8 341 35.8
Glyma.10G292300 Glycine max HOM05D000283 ORTHO05D005391 9.4e-51 206.5 422 32.9
BcaB06g29078 Brassica carinata HOM05D000283 ORTHO05D005391 1.2e-50 206.1 341 36.4
Lj8C92G16 Lonicera japonica HOM05D000283 ORTHO05D005391 1.2e-50 206.1 343 37.3
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 1.6e-50 205.7 610 30.7
Duzib106G1632 Durio zibethinus HOM05D000283 ORTHO05D005391 1.6e-50 205.7 341 36.1
Glyma.20G242100 Glycine max HOM05D000283 ORTHO05D005391 1.6e-50 205.7 411 33.8
Lj5g0022773 Lotus japonicus HOM05D000283 ORTHO05D005391 1.6e-50 205.7 342 35.4
Manes.07G106300 Manihot esculenta HOM05D000283 ORTHO05D005391 2.1e-50 205.3 341 35.5
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 2.7e-50 204.9 342 36.0
TPR.G10417 Trifolium pratense HOM05D000283 ORTHO05D005391 2.7e-50 204.9 388 34.5
Manes.10G039400 Manihot esculenta HOM05D000283 ORTHO05D005391 3.6e-50 204.5 342 37.1
Thecc.10G063000 Theobroma cacao HOM05D000283 ORTHO05D005391 3.6e-50 204.5 341 36.7
PSO384G3825 Papaver somniferum HOM05D000283 ORTHO05D005391 4.7e-50 204.1 341 37.0
Solyc05g054910.3 Solanum lycopersicum HOM05D000283 ORTHO05D005391 4.7e-50 204.1 341 35.8
CANSAT56G0145 Cannabis sativa HOM05D000283 ORTHO05D005391 6.1e-50 203.8 342 35.7
Prupe.2G224600 Prunus persica HOM05D000283 ORTHO05D005391 6.1e-50 203.8 342 36.8
MD01G1117300 Malus domestica HOM05D000283 ORTHO05D005391 1.8e-49 202.2 341 36.1
Lalb_Chr21g0307161 Lupinus albus HOM05D000283 ORTHO05D005391 3.0e-49 201.4 341 35.2
Lalb_Chr02g0143871 Lupinus albus HOM05D000283 ORTHO05D005391 4.0e-49 201.1 415 33.0
Medtr3g073080 Medicago truncatula HOM05D000283 ORTHO05D005391 4.0e-49 201.1 420 32.6
Phvul.007G008100 Phaseolus vulgaris HOM05D000283 ORTHO05D005391 4.0e-49 201.1 342 35.1
Haze_16972 Corylus avellana HOM05D000283 ORTHO05D005391 5.2e-49 200.7 581 30.3
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 5.2e-49 200.7 342 34.5
MD07G1184700 Malus domestica HOM05D000283 ORTHO05D005391 6.7e-49 200.3 341 36.4
SGA_v2.0_scaffold291G47345 Striga asiatica HOM05D000283 ORTHO05D005391 6.7e-49 200.3 621 29.5
arahy.Tifrunner.gnm1.ann1.79HMAA Arachis hypogaea HOM05D000283 ORTHO05D005391 1.2e-48 199.5 417 32.9
CAN.G1602.11 Capsicum annuum HOM05D000283 ORTHO05D005391 1.2e-48 199.5 406 33.7
arahy.Tifrunner.gnm1.ann1.M4B7ES Arachis hypogaea HOM05D000283 ORTHO05D005391 1.5e-48 199.1 417 32.9
AUR62042665 Chenopodium quinoa HOM05D000283 ORTHO05D005391 1.5e-48 199.1 342 35.7
VMungo0720G2546 Vigna mungo HOM05D000283 ORTHO05D005391 2.0e-48 198.7 420 32.1
QL08p057534 Quercus lobata HOM05D000283 ORTHO05D005391 2.6e-48 198.4 622 29.7
THA.LOC104809997 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 4.4e-48 197.6 619 30.0
Cpa.g.sc1.303 Carica papaya HOM05D000283 ORTHO05D005391 7.5e-48 196.8 341 36.1
Actinidia03006 Actinidia chinensis HOM05D000283 ORTHO05D005391 1.3e-47 196.1 346 35.3
Ciclev10030610m.g Citrus clementina HOM05D000283 ORTHO05D005391 1.3e-47 196.1 619 28.9
Psat6g239040 Pisum sativum HOM05D000283 ORTHO05D005391 1.3e-47 196.1 413 32.2
AagrBONN_evm.TU.Sc2ySwM_117.607 Anthoceros agrestis HOM05D000283 ORTHO05D005391 1.7e-47 195.7 611 29.0
Cc02_g08650 Coffea canephora HOM05D000283 ORTHO05D005391 2.2e-47 195.3 609 29.2
Os05g0462600 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 2.8e-47 194.9 341 33.7
Pp3c2_24860 Physcomitrium patens HOM05D000283 ORTHO05D005391 2.8e-47 194.9 341 34.6
TAR633G1628 Trochodendron aralioides HOM05D000283 ORTHO05D005391 2.8e-47 194.9 411 33.1
A05p07060 Brassica napus HOM05D000283 ORTHO05D005391 4.8e-47 194.1 607 29.0
BraA05t19671Z Brassica rapa HOM05D000283 ORTHO05D005391 4.8e-47 194.1 607 29.0
Sed0023338 Sechium edule HOM05D000283 ORTHO05D005391 6.3e-47 193.7 341 34.3
PGR142G1216 Punica granatum HOM05D000283 ORTHO05D005391 1.1e-46 193.0 605 30.6
Sabra08G0033800 Salix brachista HOM05D000283 ORTHO05D005391 1.1e-46 193.0 415 33.3
CiPaw.02G178600 Carya illinoinensis HOM05D000283 ORTHO05D005391 1.4e-46 192.6 621 28.5
FAN06G1635 Fragaria x ananassa HOM05D000283 ORTHO05D005391 4.1e-46 191.0 625 29.0
TAR636G1569 Trochodendron aralioides HOM05D000283 ORTHO05D005391 5.3e-46 190.7 321 36.1
Migut.F01533 Erythranthe guttata HOM05D000283 ORTHO05D005391 7.0e-46 190.3 583 30.0
Nitab4.5_0000914g0100 Nicotiana tabacum HOM05D000283 ORTHO05D005391 7.0e-46 190.3 368 34.2
AL4G36680 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 9.1e-46 189.9 620 28.4
CBR_g53551 Chara braunii HOM05D000283 ORTHO05D005391 1.2e-45 189.5 477 34.0
MCO13G063 Micromonas commoda HOM05D000283 ORTHO05D005391 1.2e-45 189.5 349 36.4
Atru.chr12.592 Acer truncatum HOM05D000283 ORTHO05D005391 1.6e-45 189.1 611 29.0
ECA232G0450 Erigeron canadensis HOM05D000283 ORTHO05D005391 1.6e-45 189.1 616 30.0
Mapoly0013s0152 Marchantia polymorpha HOM05D000283 ORTHO05D005391 1.6e-45 189.1 617 28.5
Hund22435 Selenicereus undatus HOM05D000283 ORTHO05D005391 1.6e-45 189.1 618 29.4
FvH4_7g20770 Fragaria vesca HOM05D000283 ORTHO05D005391 2.0e-45 188.7 625 28.8
Actinidia38225 Actinidia chinensis HOM05D000283 ORTHO05D005391 2.7e-45 188.3 341 34.9
Ah.16g107830 Amaranthus hybridus HOM05D000283 ORTHO05D005391 2.7e-45 188.3 619 27.5
BcaB02g09134 Brassica carinata HOM05D000283 ORTHO05D005391 2.7e-45 188.3 615 28.6
SMO143G0323 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 2.7e-45 188.3 408 32.8
AT2G39340 Arabidopsis thaliana HOM05D000283 ORTHO05D005391 3.5e-45 188.0 620 28.7
PSO339G6458 Papaver somniferum HOM05D000283 ORTHO05D005391 3.5e-45 188.0 614 30.0
Thhalv10016180m.g Eutrema salsugineum HOM05D000283 ORTHO05D005391 5.9e-45 187.2 620 28.7
Pp3c1_11990 Physcomitrium patens HOM05D000283 ORTHO05D005391 5.9e-45 187.2 610 28.5
BcaC02g12050 Brassica carinata HOM05D000283 ORTHO05D005391 1.0e-44 186.4 611 28.5
C04p08450 Brassica napus HOM05D000283 ORTHO05D005391 1.0e-44 186.4 611 28.5
CiPaw.01G279800 Carya illinoinensis HOM05D000283 ORTHO05D005391 1.0e-44 186.4 578 29.6
Carub.0004s2138 Capsella rubella HOM05D000283 ORTHO05D005391 2.9e-44 184.9 590 29.7
BolC4t22443H Brassica oleracea HOM05D000283 ORTHO05D005391 5.0e-44 184.1 611 28.3
FAN06G4940 Fragaria x ananassa HOM05D000283 ORTHO05D005391 5.0e-44 184.1 541 29.9
Sopen05g033370 Solanum pennellii HOM05D000283 ORTHO05D005391 5.0e-44 184.1 601 28.5
CARHR134130 Cardamine hirsuta HOM05D000283 ORTHO05D005391 1.1e-43 183.0 620 27.4
COL.COLO4_05804 Corchorus olitorius HOM05D000283 ORTHO05D005391 1.5e-43 182.6 573 29.5
Nn2g10554 Nelumbo nucifera HOM05D000283 ORTHO05D005391 1.5e-43 182.6 617 28.2
TWI38G2098 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 1.5e-43 182.6 570 29.1
THA.LOC104824248 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 1.9e-43 182.2 616 27.6
RcHm_v2.0_Chr1g0365011 Rosa chinensis HOM05D000283 ORTHO05D005391 4.2e-43 181.0 589 28.7
CsaV3_5G006520 Cucumis sativus L. HOM05D000283 ORTHO05D005391 5.5e-43 180.6 580 29.5
Peaxi162Scf00015g02711 Petunia axillaris HOM05D000283 ORTHO05D005391 7.2e-43 180.3 608 28.5
Aa31LG5G20290 Aethionema arabicum HOM05D000283 ORTHO05D005391 9.4e-43 179.9 526 30.6
EL10Ac2g03504 Beta vulgaris HOM05D000283 ORTHO05D005391 9.4e-43 179.9 606 29.4
unitig_749.g14014 Utricularia gibba HOM05D000283 ORTHO05D005391 1.2e-42 179.5 246 41.5
DCAR_027697 Daucus carota HOM05D000283 ORTHO05D005391 1.6e-42 179.1 311 34.1
Sed0010822 Sechium edule HOM05D000283 ORTHO05D005391 1.6e-42 179.1 609 28.1
GSVIVG01032627001 Vitis vinifera HOM05D000283 ORTHO05D005391 1.6e-42 179.1 611 29.1
Potri.010G213700 Populus trichocarpa HOM05D000283 ORTHO05D005391 2.1e-42 178.7 623 28.4
MELO3C023808.2 Cucumis melo HOM05D000283 ORTHO05D005391 2.7e-42 178.3 592 29.4
Oeu050639.2 Olea europaea HOM05D000283 ORTHO05D005391 2.7e-42 178.3 575 28.7
HPP92_015567 Vanilla planifolia HOM05D000283 ORTHO05D005391 2.7e-42 178.3 342 33.9
MBI05_g22074_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 4.7e-42 177.6 588 28.7
AUR62025540 Chenopodium quinoa HOM05D000283 ORTHO05D005391 8.0e-42 176.8 584 28.3
Nitab4.5_0010706g0030 Nicotiana tabacum HOM05D000283 ORTHO05D005391 8.0e-42 176.8 599 29.0
Potri.008G047700 Populus trichocarpa HOM05D000283 ORTHO05D005391 1.0e-41 176.4 602 27.9
SalBow6G0521 Salvia bowleyana HOM05D000283 ORTHO05D005391 1.8e-41 175.6 361 34.3
ATR0681G328 Amborella trichopoda HOM05D000283 ORTHO05D005391 1.5e-40 172.6 619 27.3
Sabra10G0165400 Salix brachista HOM05D000283 ORTHO05D005391 2.0e-40 172.2 658 27.4
Zm00001eb351500 Zea mays HOM05D000283 ORTHO05D005391 2.0e-40 172.2 567 28.7
TWI15G0630 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 7.5e-40 170.2 583 27.6
Zm00001eb289820 Zea mays HOM05D000283 ORTHO05D005391 7.5e-40 170.2 599 29.0
ClCG02G013670 Citrullus lanatus HOM05D000283 ORTHO05D005391 1.7e-39 169.1 613 28.5
Hma1.2p1_0207F.1_g087980 Hydrangea macrophylla HOM05D000283 ORTHO05D005391 2.2e-39 168.7 577 28.9
PRCOL_00005565 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 4.8e-39 167.5 400 32.2
Dinv31389 Davidia involucrata HOM05D000283 ORTHO05D005391 7.5e-32 143.7 306 33.7
PRCOL_00002713 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 3.7e-31 141.4 306 32.4
Os01g0836400 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 4.9e-31 141.0 456 30.7
SEGI_11420 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 5.6e-27 127.5 217 38.2
SMO141G0080 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 5.2e-25 120.9 309 30.7
AL5G26090 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 2.0e-24 119.0 504 26.6
Sc20g0002350 Simmondsia chinensis HOM05D000283 ORTHO05D005391 4.4e-24 117.9 402 28.4
Gohir.D07G196232 Gossypium hirsutum HOM05D000283 ORTHO05D005391 2.5e-19 102.1 114 46.5
SHI28193 Sapria himalayana HOM05D000283 ORTHO05D005391 2.8e-18 98.6 94 54.3
QL10p060204 Quercus lobata HOM05D000283 ORTHO05D005391 2.9e-15 88.6 124 39.5
HPP92_015519 Vanilla planifolia HOM05D000283 ORTHO05D005391 1.9e-11 75.9 198 31.8
SEGI_03051 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 3.6e-10 71.6 186 29.6
SHI28196 Sapria himalayana HOM05D000283 ORTHO05D005391 1.2e-08 66.6 129 35.7
DCAR_005053 Daucus carota HOM05D000283 ORTHO05D005391 2.6e-08 65.5 156 29.5
MBI05_g30758_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 9.9e-08 63.5 170 28.2
AagrBONN_evm.TU.Sc2ySwM_362.842 Anthoceros agrestis HOM05D002494 ORTHO05D002673 2.2e-07 62.4 249 26.9
MBI05_g32639_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 2.4e-06 58.9 183 25.1


User provided reference genes

Program Settings