Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g196850 Chlamydomonas reinhardtii HOM05D005544 ORTHO05D007303 1.3e-288 995.7 525 100.0
PRCOL_00005139 Prasinoderma coloniale HOM05D005544 ORTHO05D007303 8.4e-110 401.7 535 43.6
Pp3c8_11620 Physcomitrium patens HOM05D005544 ORTHO05D007303 2.9e-94 350.1 530 43.4
SMO119G0317 Selaginella moellendorffii HOM05D005544 ORTHO05D007303 1.0e-91 341.7 501 41.9
CBR_g11128 Chara braunii HOM05D005544 ORTHO05D007303 2.4e-88 330.5 423 41.6
Nitab4.5_0009496g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 5.5e-85 319.3 504 38.9
Duzib211G0556 Durio zibethinus HOM05D005544 ORTHO05D007303 6.0e-84 315.8 511 36.4
MD03G1274200 Malus domestica HOM05D005544 ORTHO05D007303 2.3e-83 313.9 527 36.6
Nitab4.5_0001651g0120 Nicotiana tabacum HOM05D005544 ORTHO05D007303 2.3e-83 313.9 503 38.4
CSS0033644 Camellia sinensis var. sinensis HOM05D005544 ORTHO05D007303 5.1e-83 312.8 508 35.2
Mapoly0066s0060 Marchantia polymorpha HOM05D005544 ORTHO05D007303 6.7e-83 312.4 527 39.8
COL.COLO4_08045 Corchorus olitorius HOM05D005544 ORTHO05D007303 1.5e-82 311.2 509 36.1
Sopen05g006280 Solanum pennellii HOM05D005544 ORTHO05D007303 2.1e-81 307.4 504 35.9
Actinidia00706 Actinidia chinensis HOM05D005544 ORTHO05D007303 2.8e-81 307.0 502 36.7
vmacro02516 Vaccinium macrocarpon HOM05D005544 ORTHO05D007303 3.7e-81 306.6 504 35.1
Nitab4.5_0015534g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 4.8e-81 306.2 504 38.3
MD11G1296600 Malus domestica HOM05D005544 ORTHO05D007303 6.3e-81 305.8 527 36.1
Thecc.01G288500 Theobroma cacao HOM05D005544 ORTHO05D007303 8.2e-81 305.4 511 35.4
unitig_22.g6695 Utricularia gibba HOM05D005544 ORTHO05D007303 8.2e-81 305.4 506 36.6
Lsat_1_v5_gn_5_189761 Lactuca sativa HOM05D005544 ORTHO05D007303 1.1e-80 305.1 506 34.6
Cpa.g.sc9.148 Carica papaya HOM05D005544 ORTHO05D007303 4.1e-80 303.1 504 34.7
Gohir.A08G044300 Gossypium hirsutum HOM05D005544 ORTHO05D007303 5.3e-80 302.8 501 34.9
Oeu047906.1 Olea europaea HOM05D005544 ORTHO05D007303 5.3e-80 302.8 507 35.5
Rhsim13G0018400 Rhododendron simsii HOM05D005544 ORTHO05D007303 1.5e-79 301.2 502 36.1
Ciclev10019671m.g Citrus clementina HOM05D005544 ORTHO05D007303 5.9e-79 299.3 508 37.2
ECA248G0063 Erigeron canadensis HOM05D005544 ORTHO05D007303 5.9e-79 299.3 507 37.3
Medtr1g089260 Medicago truncatula HOM05D005544 ORTHO05D007303 5.9e-79 299.3 511 34.4
Gohir.D08G054000 Gossypium hirsutum HOM05D005544 ORTHO05D007303 1.3e-78 298.1 501 34.5
Gorai.004G054300 Gossypium raimondii HOM05D005544 ORTHO05D007303 1.3e-78 298.1 501 34.5
SGA_v2.0_scaffold172G39056 Striga asiatica HOM05D005544 ORTHO05D007303 2.2e-78 297.4 518 35.7
ATR0691G265 Amborella trichopoda HOM05D005544 ORTHO05D007303 6.5e-78 295.8 521 33.4
Manes.02G181800 Manihot esculenta HOM05D005544 ORTHO05D007303 8.5e-78 295.4 504 34.1
TWI59G1451 Tripterygium wilfordii HOM05D005544 ORTHO05D007303 8.5e-78 295.4 503 34.6
Aa31LG1G29410 Aethionema arabicum HOM05D005544 ORTHO05D007303 1.1e-77 295.0 505 34.1
Potri.002G213500 Populus trichocarpa HOM05D005544 ORTHO05D007303 2.5e-77 293.9 499 35.1
Lj5g0002288 Lotus japonicus HOM05D005544 ORTHO05D007303 4.2e-77 293.1 512 35.4
Solyc05g010470.4 Solanum lycopersicum HOM05D005544 ORTHO05D007303 5.5e-77 292.7 476 35.7
THA.LOC104802213 Tarenaya hassleriana HOM05D005544 ORTHO05D007303 1.2e-76 291.6 500 33.6
Dinv11286 Davidia involucrata HOM05D005544 ORTHO05D007303 2.1e-76 290.8 503 34.8
Potri.014G135600 Populus trichocarpa HOM05D005544 ORTHO05D007303 2.1e-76 290.8 509 36.5
Lj1C40T13 Lonicera japonica HOM05D005544 ORTHO05D007303 3.6e-76 290.0 517 33.8
Phvul.007G167300 Phaseolus vulgaris HOM05D005544 ORTHO05D007303 3.6e-76 290.0 509 34.2
VMungo0720G2755 Vigna mungo HOM05D005544 ORTHO05D007303 3.6e-76 290.0 510 35.3
Migut.N02122 Erythranthe guttata HOM05D005544 ORTHO05D007303 3.0e-75 287.0 516 33.9
Sabra14G0102000 Salix brachista HOM05D005544 ORTHO05D007303 6.7e-75 285.8 508 35.8
Os07g0224900 Oryza sativa ssp. japonica HOM05D005544 ORTHO05D007303 1.5e-74 284.6 512 34.2
Ca_10382_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 2.5e-74 283.9 519 33.9
Ca_29660_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 2.5e-74 283.9 519 33.9
HanXRQChr11g0334851 Helianthus annuus HOM05D005544 ORTHO05D007303 3.3e-74 283.5 509 33.6
Migut.O00595 Erythranthe guttata HOM05D005544 ORTHO05D007303 4.3e-74 283.1 514 33.7
Thhalv10001392m.g Eutrema salsugineum HOM05D005544 ORTHO05D007303 4.8e-73 279.6 503 33.0
CARHR143370 Cardamine hirsuta HOM05D005544 ORTHO05D007303 1.8e-72 277.7 505 33.5
BolC3t12848H Brassica oleracea HOM05D005544 ORTHO05D007303 3.1e-72 276.9 511 33.7
Sp4g29910 Schrenkiella parvula HOM05D005544 ORTHO05D007303 5.3e-72 276.2 507 32.3
Glyma.02G151500 Glycine max HOM05D005544 ORTHO05D007303 6.9e-72 275.8 514 35.8
Nn4g24755 Nelumbo nucifera HOM05D005544 ORTHO05D007303 9.1e-72 275.4 510 35.3
TAR362G0205 Trochodendron aralioides HOM05D005544 ORTHO05D007303 9.1e-72 275.4 503 37.0
Cc01_g20090 Coffea canephora HOM05D005544 ORTHO05D007303 3.4e-71 273.5 506 37.2
Carub.0004s3071 Capsella rubella HOM05D005544 ORTHO05D007303 1.0e-70 271.9 500 33.2
CDE07G0705 Ceratophyllum demersum HOM05D005544 ORTHO05D007303 1.0e-70 271.9 498 32.9
Nn3g18705 Nelumbo nucifera HOM05D005544 ORTHO05D007303 1.0e-70 271.9 516 35.1
MBI11_g11983_MAGBIO Magnolia biondii HOM05D005544 ORTHO05D007303 1.3e-70 271.6 503 35.4
BcaB01g05978 Brassica carinata HOM05D005544 ORTHO05D007303 2.2e-70 270.8 509 32.0
A03p02590 Brassica napus HOM05D005544 ORTHO05D007303 2.2e-70 270.8 503 32.2
C03p02930 Brassica napus HOM05D005544 ORTHO05D007303 2.2e-70 270.8 509 32.4
BraA03t09620Z Brassica rapa HOM05D005544 ORTHO05D007303 3.8e-70 270.0 504 32.1
AT2G47990 Arabidopsis thaliana HOM05D005544 ORTHO05D007303 1.4e-69 268.1 502 34.5
SalBow2G1504 Salvia bowleyana HOM05D005544 ORTHO05D007303 9.4e-69 265.4 513 34.1
FAN08G3375 Fragaria x ananassa HOM05D005544 ORTHO05D007303 1.2e-68 265.0 524 34.7
AL4G47580 Arabidopsis lyrata HOM05D005544 ORTHO05D007303 2.1e-68 264.2 506 32.8
FvH4_5g25500 Fragaria vesca HOM05D005544 ORTHO05D007303 2.7e-68 263.8 524 34.0
Sed0004995 Sechium edule HOM05D005544 ORTHO05D007303 3.6e-68 263.5 505 33.9
PGR044G1528 Punica granatum HOM05D005544 ORTHO05D007303 6.1e-68 262.7 510 33.7
PGR088G0006 Punica granatum HOM05D005544 ORTHO05D007303 6.1e-68 262.7 510 33.7
QL05p077001 Quercus lobata HOM05D005544 ORTHO05D007303 6.1e-68 262.7 510 35.1
FAN13G2222 Fragaria x ananassa HOM05D005544 ORTHO05D007303 1.0e-67 261.9 524 34.4
CsaV3_7G028370 Cucumis sativus L. HOM05D005544 ORTHO05D007303 1.4e-67 261.5 506 34.2
Prupe.1G201800 Prunus persica HOM05D005544 ORTHO05D007303 1.4e-67 261.5 529 32.3
RcHm_v2.0_Chr7g0215731 Rosa chinensis HOM05D005544 ORTHO05D007303 1.8e-67 261.2 523 33.7
PGSC0003DMG400043560 Solanum tuberosum HOM05D005544 ORTHO05D007303 1.8e-67 261.2 505 34.7
QL02p074655 Quercus lobata HOM05D005544 ORTHO05D007303 2.3e-67 260.8 510 34.7
QL12p023600 Quercus lobata HOM05D005544 ORTHO05D007303 2.3e-67 260.8 510 34.9
QL12p023649 Quercus lobata HOM05D005544 ORTHO05D007303 2.3e-67 260.8 510 34.7
Hma1.2p1_0358F.1_g134770 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 3.9e-67 260.0 465 37.0
FAN18G1194 Fragaria x ananassa HOM05D005544 ORTHO05D007303 5.1e-67 259.6 524 33.8
Cfa004766 Carpinus fangiana HOM05D005544 ORTHO05D007303 6.7e-67 259.2 510 34.7
CiPaw.07G098400 Carya illinoinensis HOM05D005544 ORTHO05D007303 6.7e-67 259.2 507 34.9
Atru.chr5.1295 Acer truncatum HOM05D005544 ORTHO05D007303 3.3e-66 256.9 504 34.1
Haze_10363 Corylus avellana HOM05D005544 ORTHO05D007303 4.4e-66 256.5 510 34.5
MELO3C015885.2 Cucumis melo HOM05D005544 ORTHO05D007303 4.4e-66 256.5 506 33.6
SHI20711 Sapria himalayana HOM05D005544 ORTHO05D007303 2.2e-65 254.2 511 33.5
AUR62042230 Chenopodium quinoa HOM05D005544 ORTHO05D007303 6.3e-65 252.7 501 33.1
QL12p023632 Quercus lobata HOM05D005544 ORTHO05D007303 6.3e-65 252.7 509 32.4
SEGI_38002 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 1.4e-64 251.5 332 41.3
AUR62037787 Chenopodium quinoa HOM05D005544 ORTHO05D007303 4.1e-64 250.0 508 32.1
DCAR_018371 Daucus carota HOM05D005544 ORTHO05D007303 4.1e-64 250.0 502 34.5
Zm00001eb303580 Zea mays HOM05D005544 ORTHO05D007303 6.9e-64 249.2 516 31.8
Lalb_Chr02g0143021 Lupinus albus HOM05D005544 ORTHO05D007303 1.0e-62 245.4 511 33.5
Ah.09g228790 Amaranthus hybridus HOM05D005544 ORTHO05D007303 2.9e-62 243.8 509 32.8
CANSAT25G0498 Cannabis sativa HOM05D005544 ORTHO05D007303 1.9e-61 241.1 508 32.9
Sc17g0005190 Simmondsia chinensis HOM05D005544 ORTHO05D007303 3.2e-61 240.4 507 33.7
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 9.4e-61 238.8 482 32.6
Actinidia24289 Actinidia chinensis HOM05D005544 ORTHO05D007303 1.2e-60 238.4 499 31.5
Aqoxy2G03155 Aquilegia oxysepala HOM05D005544 ORTHO05D007303 6.1e-60 236.1 505 32.5
PSO675G2029 Papaver somniferum HOM05D005544 ORTHO05D007303 1.4e-59 235.0 507 32.7
CAN.G184.38 Capsicum annuum HOM05D005544 ORTHO05D007303 1.8e-59 234.6 504 32.7
BcaB02g08729 Brassica carinata HOM05D005544 ORTHO05D007303 5.2e-59 233.0 504 33.3
Glyma.10G022600 Glycine max HOM05D005544 ORTHO05D007303 5.2e-59 233.0 507 32.7
PSO541G2439 Papaver somniferum HOM05D005544 ORTHO05D007303 3.3e-58 230.3 507 32.1
Hma1.2p1_0358F.1_g134780 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 2.0e-55 221.1 509 32.6
Cfa022606 Carpinus fangiana HOM05D005544 ORTHO05D007303 2.7e-52 210.7 503 33.8
Psat6g168560 Pisum sativum HOM05D005544 ORTHO05D007303 1.8e-51 208.0 449 33.0
Peaxi162Scf00017g00211 Petunia axillaris HOM05D005544 ORTHO05D007303 6.5e-46 189.5 501 27.5
QL12p023536 Quercus lobata HOM05D005544 ORTHO05D007303 1.2e-44 185.3 318 34.6
Sc17g0005180 Simmondsia chinensis HOM05D005544 ORTHO05D007303 4.8e-41 173.3 365 34.8
GSVIVG01011022001 Vitis vinifera HOM05D005544 ORTHO05D007303 9.1e-40 169.1 508 28.5
HPP92_015604 Vanilla planifolia HOM05D005544 ORTHO05D007303 3.5e-31 140.6 217 37.8
CBR_g31026 Chara braunii HOM05D005544 ORTHO05D007303 4.7e-28 130.2 276 31.5
Sed0004423 Sechium edule HOM05D005544 ORTHO05D007303 1.8e-27 128.3 415 26.5
HPP92_015605 Vanilla planifolia HOM05D005544 ORTHO05D007303 2.2e-25 121.3 271 29.2
SalBow3G0398 Salvia bowleyana HOM05D005544 ORTHO05D002055 5.9e-23 113.2 181 38.1
TPR.G16943 Trifolium pratense HOM05D005544 ORTHO05D007303 1.7e-22 111.7 501 24.8
Hma1.2p1_1992F.1_g310250 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 2.6e-18 97.8 336 27.1
PGSC0003DMG400036093 Solanum tuberosum HOM05D005544 ORTHO05D007303 7.3e-13 79.7 98 38.8
Hma1.2p1_3416F.1_g335940 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 2.1e-12 78.2 123 38.2
COL.COLO4_19838 Corchorus olitorius HOM05D005544 ORTHO05D007303 8.3e-09 66.2 189 30.7
Nn3g19125 Nelumbo nucifera HOM05D005544 ORTHO05D007303 8.3e-09 66.2 75 44.0
C04p71990 Brassica napus HOM05D002853 ORTHO05D003030 2.4e-08 64.7 118 31.4
Aa31LG7G6630 Aethionema arabicum HOM05D003913 ORTHO05D004803 7.8e-07 59.7 246 22.0
ATR0693G369 Amborella trichopoda HOM05D005151 ORTHO05D006322 7.8e-07 59.7 141 30.5
Psat7g003840 Pisum sativum HOM05D002288 ORTHO05D002894 8.6e-06 56.2 163 31.9


User provided reference genes

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