Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g192550 Chlamydomonas reinhardtii HOM05D005045 ORTHO05D006386 0.0e+00 2125.1 1351 100.0
Mapoly0027s0186 Marchantia polymorpha HOM05D005045 ORTHO05D006386 9.6e-150 535.8 1360 31.6
Pp3c10_3760 Physcomitrium patens HOM05D005045 ORTHO05D006386 5.2e-148 530.0 1371 32.3
AagrBONN_evm.TU.Sc2ySwM_368.995 Anthoceros agrestis HOM05D002013 ORTHO05D002293 9.9e-147 525.8 1356 31.3
MCO01G132 Micromonas commoda HOM05D005045 ORTHO05D006386 8.4e-146 522.7 1398 32.2
Glyma.18G002400 Glycine max HOM05D005045 ORTHO05D006386 2.8e-141 507.7 1396 30.8
EL10Ac3g07454 Beta vulgaris HOM05D005045 ORTHO05D006386 3.6e-141 507.3 1393 30.6
TWI53G1845 Tripterygium wilfordii HOM05D005045 ORTHO05D006386 8.1e-141 506.1 1389 30.9
CiPaw.01G116800 Carya illinoinensis HOM05D005045 ORTHO05D006386 3.1e-140 504.2 1390 30.6
CAN.G765.38 Capsicum annuum HOM05D005045 ORTHO05D006386 1.5e-139 501.9 1384 34.5
Psat5g100040 Pisum sativum HOM05D005045 ORTHO05D006386 2.0e-139 501.5 1384 31.8
Phvul.001G266800 Phaseolus vulgaris HOM05D005045 ORTHO05D006386 5.8e-139 500.0 1398 30.3
Migut.G00767 Erythranthe guttata HOM05D005045 ORTHO05D006386 6.4e-138 496.5 1390 30.1
Cfa014961 Carpinus fangiana HOM05D005045 ORTHO05D006386 1.1e-137 495.7 1377 30.6
HPP92_024209 Vanilla planifolia HOM05D005045 ORTHO05D006386 1.1e-137 495.7 1382 32.3
MD05G1230300 Malus domestica HOM05D005045 ORTHO05D006386 1.4e-137 495.4 1383 29.7
Thhalv10016151m.g Eutrema salsugineum HOM05D005045 ORTHO05D006386 4.2e-137 493.8 1404 29.8
THA.LOC104826172 Tarenaya hassleriana HOM05D005045 ORTHO05D006386 9.3e-137 492.7 1403 32.9
Carub.0004s1329 Capsella rubella HOM05D005045 ORTHO05D006386 2.7e-136 491.1 1400 30.6
Lalb_Chr11g0075871 Lupinus albus HOM05D005045 ORTHO05D006386 6.0e-136 490.0 1380 30.1
VMungo1383G3533 Vigna mungo HOM05D005045 ORTHO05D006386 3.9e-135 487.3 1383 33.8
Potri.001G320300 Populus trichocarpa HOM05D005045 ORTHO05D006386 6.7e-135 486.5 1392 30.2
AL4G27320 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 1.9e-134 485.0 1389 29.4
MELO3C006292.2 Cucumis melo HOM05D005045 ORTHO05D006386 3.3e-134 484.2 1398 31.9
Lj6g0005100 Lotus japonicus HOM05D005045 ORTHO05D006386 9.6e-134 482.6 1380 30.2
HanXRQChr02g0058481 Helianthus annuus HOM05D005045 ORTHO05D006386 1.6e-133 481.9 1382 33.1
FvH4_4g13300 Fragaria vesca HOM05D005045 ORTHO05D006386 2.8e-133 481.1 1376 29.5
Ciclev10004166m.g Citrus clementina HOM05D005045 ORTHO05D006386 8.1e-133 479.6 1387 29.9
MSTRG.9796 Avicennia marina HOM05D005045 ORTHO05D006386 1.1e-132 479.2 1409 32.6
Cc03_g08470 Coffea canephora HOM05D005045 ORTHO05D006386 1.4e-132 478.8 1378 30.7
RcHm_v2.0_Chr4g0413591 Rosa chinensis HOM05D005045 ORTHO05D006386 4.0e-132 477.2 1373 29.6
ATR0561G148 Amborella trichopoda HOM05D005045 ORTHO05D006386 6.9e-132 476.5 1373 31.5
Gohir.A02G019100 Gossypium hirsutum HOM05D005045 ORTHO05D006386 6.9e-132 476.5 1390 34.3
Solyc05g053800.3 Solanum lycopersicum HOM05D005045 ORTHO05D006386 1.2e-131 475.7 1381 34.1
Prupe.1G165000 Prunus persica HOM05D005045 ORTHO05D006386 1.5e-131 475.3 1391 29.9
Sp4g14350 Schrenkiella parvula HOM05D005045 ORTHO05D006386 1.5e-131 475.3 1389 29.8
AT2G31970 Arabidopsis thaliana HOM05D005045 ORTHO05D006386 2.0e-131 474.9 1391 29.8
Dinv38168 Davidia involucrata HOM05D005045 ORTHO05D006386 2.0e-131 474.9 1401 30.0
ECA233G4939 Erigeron canadensis HOM05D005045 ORTHO05D006386 2.0e-131 474.9 1386 32.4
PSO017G0058 Papaver somniferum HOM05D005045 ORTHO05D006386 2.0e-131 474.9 1390 29.6
Peaxi162Scf00423g00410 Petunia axillaris HOM05D005045 ORTHO05D006386 3.4e-131 474.2 1404 33.0
Sopen05g032270 Solanum pennellii HOM05D005045 ORTHO05D006386 4.5e-131 473.8 1383 33.9
Cpa.g.sc157.48 Carica papaya HOM05D005045 ORTHO05D006386 5.8e-131 473.4 1403 29.7
Thecc.04G195000 Theobroma cacao HOM05D005045 ORTHO05D006386 9.9e-131 472.6 1388 30.9
CsaV3_3G010730 Cucumis sativus L. HOM05D005045 ORTHO05D006386 1.3e-130 472.2 1390 32.2
Nn3g20083 Nelumbo nucifera HOM05D005045 ORTHO05D006386 1.3e-130 472.2 1394 30.7
Sed0026716 Sechium edule HOM05D005045 ORTHO05D006386 2.2e-130 471.5 1379 30.5
Gohir.D02G022400 Gossypium hirsutum HOM05D005045 ORTHO05D006386 3.8e-130 470.7 1391 34.1
Aqoxy2G03932 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 4.9e-130 470.3 1365 30.1
Gorai.005G027800 Gossypium raimondii HOM05D005045 ORTHO05D006386 6.4e-130 469.9 1391 34.1
Aa31LG5G5040 Aethionema arabicum HOM05D005045 ORTHO05D006386 1.2e-128 465.7 1400 29.5
BcaB01g04004 Brassica carinata HOM05D005045 ORTHO05D006386 2.1e-128 464.9 1367 30.9
Lsat_1_v5_gn_6_59140 Lactuca sativa HOM05D005045 ORTHO05D006386 1.0e-127 462.6 1379 29.9
CSS0020032 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 1.3e-127 462.2 1386 30.7
FAN22G0494 Fragaria x ananassa HOM05D005045 ORTHO05D006386 3.0e-127 461.1 1398 28.6
ClCG05G003110 Citrullus lanatus HOM05D005045 ORTHO05D006386 2.5e-126 458.0 1423 30.6
DCAR_005488 Daucus carota HOM05D005045 ORTHO05D006386 2.5e-126 458.0 1387 29.9
SalBow8G0828 Salvia bowleyana HOM05D005045 ORTHO05D006386 3.3e-126 457.6 1379 30.9
Medtr3g084300 Medicago truncatula HOM05D005045 ORTHO05D006386 5.6e-126 456.8 1379 32.1
Manes.03G144200 Manihot esculenta HOM05D005045 ORTHO05D006386 1.6e-125 455.3 1400 31.3
A03p17990 Brassica napus HOM05D005045 ORTHO05D006386 6.2e-125 453.4 1389 30.0
C03p21030 Brassica napus HOM05D005045 ORTHO05D006386 1.4e-124 452.2 1394 29.7
BolC3t14484H Brassica oleracea HOM05D005045 ORTHO05D006386 1.8e-124 451.8 1395 29.7
BraA03t11060Z Brassica rapa HOM05D005045 ORTHO05D006386 1.0e-122 446.0 1408 29.5
Duzib151G0179 Durio zibethinus HOM05D005045 ORTHO05D006386 1.4e-121 442.2 1382 29.9
Sabra16G0202900 Salix brachista HOM05D005045 ORTHO05D006386 2.5e-121 441.4 1482 28.8
TPR.G25379 Trifolium pratense HOM05D005045 ORTHO05D006386 2.1e-120 438.3 1398 29.0
Actinidia28996 Actinidia chinensis HOM05D005045 ORTHO05D006386 6.0e-120 436.8 1392 28.9
SMO356G0717 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 3.0e-119 434.5 1362 30.0
SGA_v2.0_scaffold27G11679 Striga asiatica HOM05D005045 ORTHO05D006386 5.7e-118 430.3 1394 29.7
Atru.chr4.1578 Acer truncatum HOM05D005045 ORTHO05D006386 1.3e-117 429.1 1362 30.5
PRCOL_00000463 Prasinoderma coloniale HOM05D005045 ORTHO05D006386 1.3e-117 429.1 1372 31.4
PGR142G0016 Punica granatum HOM05D005045 ORTHO05D006386 1.3e-117 429.1 1380 28.8
FAN12G2321 Fragaria x ananassa HOM05D005045 ORTHO05D006386 2.8e-117 427.9 1375 28.9
Nitab4.5_0002260g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 2.6e-115 421.4 1326 30.8
Haze_11653 Corylus avellana HOM05D005045 ORTHO05D006386 2.5e-113 414.8 1583 27.0
FAN07G1455 Fragaria x ananassa HOM05D005045 ORTHO05D006386 4.6e-112 410.6 1297 27.8
CBR_g44539 Chara braunii HOM05D005045 ORTHO05D006386 7.9e-112 409.8 1308 29.9
CDE02G0777 Ceratophyllum demersum HOM05D005045 ORTHO05D006386 3.1e-108 397.9 1375 29.5
vmacro15566 Vaccinium macrocarpon HOM05D005045 ORTHO05D006386 1.1e-105 389.4 1434 31.5
Eucgr.H00025 Eucalyptus grandis HOM05D005045 ORTHO05D006386 2.2e-90 338.6 1281 26.5
Sc19g0007360 Simmondsia chinensis HOM05D005045 ORTHO05D006386 6.5e-90 337.0 1285 26.9
SMO217G0009 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 1.3e-85 322.8 1315 27.1
Rhsim02G0061900 Rhododendron simsii HOM05D005045 ORTHO05D006386 1.7e-85 322.4 1461 26.3
Cfa022909 Carpinus fangiana HOM05D005045 ORTHO05D006386 4.8e-77 294.3 1343 24.2
CARHR125720 Cardamine hirsuta HOM05D005045 ORTHO05D006386 8.3e-77 293.5 396 43.4
Oeu034322.3 Olea europaea HOM05D005045 ORTHO05D006386 3.1e-76 291.6 396 42.4
AUR62018556 Chenopodium quinoa HOM05D005045 ORTHO05D006386 1.2e-75 289.7 367 46.0
Os02g0497500 Oryza sativa ssp. japonica HOM05D005045 ORTHO05D006386 2.7e-75 288.5 369 45.5
Ca_16407_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 3.8e-74 284.6 384 44.3
Ca_16416_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 3.8e-74 284.6 384 44.3
BcaC01g05925 Brassica carinata HOM05D005045 ORTHO05D006386 5.0e-74 284.3 393 42.2
COL.COLO4_20233 Corchorus olitorius HOM05D005045 ORTHO05D006386 8.6e-74 283.5 241 60.6
FAN17G1875 Fragaria x ananassa HOM05D005045 ORTHO05D006386 1.5e-73 282.7 297 50.5
CSS0025820 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 7.2e-73 280.4 348 46.0
MBI07_g27366_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 7.2e-73 280.4 251 54.2
arahy.Tifrunner.gnm1.ann1.2Y4S4L Arachis hypogaea HOM05D005045 ORTHO05D006386 1.6e-72 279.3 255 54.1
arahy.Tifrunner.gnm1.ann1.RK3EBX Arachis hypogaea HOM05D005045 ORTHO05D006386 1.6e-72 279.3 255 54.1
unitig_0.g1961 Utricularia gibba HOM05D005045 ORTHO05D006386 1.6e-72 279.3 390 43.6
TAR362G1154 Trochodendron aralioides HOM05D005045 ORTHO05D006386 4.7e-72 277.7 253 53.8
Ca_16406_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 3.0e-71 275.0 251 53.4
Ah.04g149410 Amaranthus hybridus HOM05D005045 ORTHO05D006386 4.0e-71 274.6 392 43.1
Ca_16414_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 4.0e-71 274.6 221 58.8
BcaNung07126 Brassica carinata HOM05D005045 ORTHO05D006386 8.9e-71 273.5 313 48.6
unitig_0.g1960 Utricularia gibba HOM05D005045 ORTHO05D006386 3.4e-70 271.6 219 58.4
SHI26063 Sapria himalayana HOM05D005045 ORTHO05D006386 4.4e-70 271.2 259 52.9
SEGI_03959 Sequoiadendron giganteum HOM05D005045 ORTHO05D006386 5.9e-67 260.8 788 28.9
AUR62020863 Chenopodium quinoa HOM05D005045 ORTHO05D006386 3.8e-66 258.1 814 31.0
QL06p025788 Quercus lobata HOM05D005045 ORTHO05D006386 1.1e-65 256.5 265 52.5
AL80U10080 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 3.3e-65 255.0 188 67.6
MBI07_g27365_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 1.6e-64 252.7 396 38.6
Zm00001eb181120 Zea mays HOM05D005045 ORTHO05D006386 7.5e-62 243.8 881 27.8
Ah.04g149400 Amaranthus hybridus HOM05D005045 ORTHO05D006386 3.5e-59 235.0 221 54.3
arahy.Tifrunner.gnm1.ann1.KK4CMR Arachis hypogaea HOM05D005045 ORTHO05D006386 1.2e-56 226.5 255 47.8
AUR62020862 Chenopodium quinoa HOM05D005045 ORTHO05D006386 2.8e-56 225.3 228 49.1
Lj6C381G5 Lonicera japonica HOM05D005045 ORTHO05D006386 1.4e-55 223.0 255 45.9
Lju912A1G33 Lonicera japonica HOM05D005045 ORTHO05D006386 3.1e-47 195.3 410 33.9
Actinidia11455 Actinidia chinensis HOM05D005045 ORTHO05D006386 2.4e-39 169.1 139 67.6
Nitab4.5_0003358g0090 Nicotiana tabacum HOM05D005045 ORTHO05D006386 2.4e-39 169.1 140 63.6
COL.COLO4_20231 Corchorus olitorius HOM05D005045 ORTHO05D006386 8.4e-37 160.6 131 58.8
Nitab4.5_0003358g0100 Nicotiana tabacum HOM05D005045 ORTHO05D006386 9.2e-36 157.1 126 57.9
Aqoxy430s001 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 4.9e-29 134.8 145 44.8
Prupe.1G180400 Prunus persica HOM05D005045 ORTHO05D006386 3.5e-27 128.6 170 41.8
Actinidia11457 Actinidia chinensis HOM05D005045 ORTHO05D006386 4.6e-27 128.3 105 65.7
SHI26076 Sapria himalayana HOM05D005045 ORTHO05D006386 9.6e-25 120.6 86 72.1
BcaNung07125 Brassica carinata HOM05D005045 ORTHO05D006386 1.1e-23 117.1 119 52.9
Lju912C0T2 Lonicera japonica HOM05D005045 ORTHO05D006386 9.0e-23 114.0 119 48.7
Rhsim02G0061800 Rhododendron simsii HOM05D005045 ORTHO05D006386 8.4e-21 107.5 72 68.1
Lsat_1_v5_gn_2_13081 Lactuca sativa HOM05D005045 ORTHO05D006386 3.7e-16 92.0 62 77.4
Lsat_1_v5_gn_3_72140 Lactuca sativa HOM05D005045 ORTHO05D006386 4.0e-15 88.6 64 64.1
Lsat_1_v5_gn_5_127521 Lactuca sativa HOM05D005045 ORTHO05D006386 8.4e-13 80.9 112 43.8
Lsat_1_v5_gn_6_56800 Lactuca sativa HOM05D000112 ORTHO05D001918 6.0e-11 74.7 53 69.8
Nitab4.5_0003358g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 1.0e-10 73.9 1063 21.3
MBI07_g45033_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 5.1e-10 71.6 100 41.0


User provided reference genes

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