Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g177053 Chlamydomonas reinhardtii HOM05D003404 ORTHO05D004052 0.0e+00 2179.1 1344 100.0
Pp3c8_3260 Physcomitrium patens HOM05D003404 ORTHO05D004052 8.4e-247 858.2 1347 43.6
Mapoly0029s0003 Marchantia polymorpha HOM05D003404 ORTHO05D004052 1.9e-246 857.1 1350 44.3
SMO364G0878 Selaginella moellendorffii HOM05D003404 ORTHO05D004052 7.1e-246 855.1 1348 44.1
Pp3c4_6460 Physcomitrium patens HOM05D003404 ORTHO05D004052 3.6e-242 842.8 1347 43.5
Os02g0167700 Oryza sativa ssp. japonica HOM05D003404 ORTHO05D004052 1.0e-236 824.7 1342 42.3
CiPaw.05G001400 Carya illinoinensis HOM05D003404 ORTHO05D004052 1.3e-236 824.3 1338 41.9
RcHm_v2.0_Chr1g0383371 Rosa chinensis HOM05D003404 ORTHO05D004052 3.0e-236 823.2 1339 42.4
Manes.07G030800 Manihot esculenta HOM05D003404 ORTHO05D004052 6.6e-236 822.0 1336 42.5
Medtr4g134620 Medicago truncatula HOM05D003404 ORTHO05D004052 6.6e-236 822.0 1339 42.4
MELO3C016463.2 Cucumis melo HOM05D003404 ORTHO05D004052 3.3e-235 819.7 1339 41.8
Cfa004441 Carpinus fangiana HOM05D003404 ORTHO05D004052 9.6e-235 818.1 1337 42.0
FvH4_7g33400 Fragaria vesca HOM05D003404 ORTHO05D004052 9.6e-235 818.1 1339 42.4
MD01G1232300 Malus domestica HOM05D003404 ORTHO05D004052 9.6e-235 818.1 1343 41.7
CANSAT21G0984 Cannabis sativa HOM05D003404 ORTHO05D004052 1.3e-234 817.8 1339 42.3
CsaV3_3G006660 Cucumis sativus L. HOM05D003404 ORTHO05D004052 2.8e-234 816.6 1339 41.5
HanXRQChr04g0110261 Helianthus annuus HOM05D003404 ORTHO05D004052 6.2e-234 815.5 1336 41.4
Psat4g002640 Pisum sativum HOM05D003404 ORTHO05D004052 1.1e-233 814.7 1339 42.1
Ciclev10000063m.g Citrus clementina HOM05D003404 ORTHO05D004052 1.4e-233 814.3 1336 41.9
Atru.chr6.225 Acer truncatum HOM05D003404 ORTHO05D004052 1.8e-233 813.9 1336 42.1
Nitab4.5_0003247g0080 Nicotiana tabacum HOM05D003404 ORTHO05D004052 5.3e-233 812.4 1347 41.6
Thecc.06G019500 Theobroma cacao HOM05D003404 ORTHO05D004052 5.3e-233 812.4 1340 42.5
MD07G1304100 Malus domestica HOM05D003404 ORTHO05D004052 1.2e-232 811.2 1343 41.5
Sc12g0008780 Simmondsia chinensis HOM05D003404 ORTHO05D004052 1.2e-232 811.2 1339 41.3
Nn5g27178 Nelumbo nucifera HOM05D003404 ORTHO05D004052 1.5e-232 810.8 1336 42.2
Phvul.003G076300 Phaseolus vulgaris HOM05D003404 ORTHO05D004052 1.5e-232 810.8 1339 42.3
Prupe.2G322700 Prunus persica HOM05D003404 ORTHO05D004052 1.5e-232 810.8 1339 41.9
Duzib235G1119 Durio zibethinus HOM05D003404 ORTHO05D004052 2.0e-232 810.4 1343 41.8
VMungo1215G2990 Vigna mungo HOM05D003404 ORTHO05D004052 2.0e-232 810.4 1339 42.2
TPR.G6014 Trifolium pratense HOM05D003404 ORTHO05D004052 2.6e-232 810.1 1339 42.0
TAR376G0925 Trochodendron aralioides HOM05D003404 ORTHO05D004052 1.3e-231 807.7 1339 41.7
HanXRQChr15g0469691 Helianthus annuus HOM05D003404 ORTHO05D004052 1.7e-231 807.4 1339 41.5
Glyma.17G002000 Glycine max HOM05D003404 ORTHO05D004052 2.2e-231 807.0 1339 42.0
ECA236G3319 Erigeron canadensis HOM05D003404 ORTHO05D004052 2.9e-231 806.6 1339 41.2
Potri.004G229300 Populus trichocarpa HOM05D003404 ORTHO05D004052 2.9e-231 806.6 1336 41.9
Sed0011322 Sechium edule HOM05D003404 ORTHO05D004052 3.8e-231 806.2 1342 41.6
Actinidia26195 Actinidia chinensis HOM05D003404 ORTHO05D004052 4.9e-231 805.8 1339 41.8
Aqoxy5G01845 Aquilegia oxysepala HOM05D003404 ORTHO05D004052 6.4e-231 805.4 1340 41.3
Duzib192G0569 Durio zibethinus HOM05D003404 ORTHO05D004052 8.4e-231 805.1 1340 42.1
PSO210G7577 Papaver somniferum HOM05D003404 ORTHO05D004052 1.1e-230 804.7 1340 41.9
Sopen01g045420 Solanum pennellii HOM05D003404 ORTHO05D004052 1.4e-230 804.3 1339 41.4
CSS0015679 Camellia sinensis var. sinensis HOM05D003404 ORTHO05D004052 1.9e-230 803.9 1336 42.1
Lalb_Chr18g0061171 Lupinus albus HOM05D003404 ORTHO05D004052 4.2e-230 802.7 1339 41.7
arahy.Tifrunner.gnm1.ann1.TT7XH0 Arachis hypogaea HOM05D003404 ORTHO05D004052 5.4e-230 802.4 1346 41.5
Lj4g0008829 Lotus japonicus HOM05D003404 ORTHO05D004052 7.1e-230 802.0 1339 41.8
arahy.Tifrunner.gnm1.ann1.F0HWYS Arachis hypogaea HOM05D003404 ORTHO05D004052 9.3e-230 801.6 1346 41.5
TWI14G1077 Tripterygium wilfordii HOM05D003404 ORTHO05D004052 9.3e-230 801.6 1335 40.9
PGR042G3714 Punica granatum HOM05D003404 ORTHO05D004052 1.6e-229 800.8 1339 41.8
Solyc01g103010.4 Solanum lycopersicum HOM05D003404 ORTHO05D004052 1.6e-229 800.8 1339 41.2
Gohir.A06G144600 Gossypium hirsutum HOM05D003404 ORTHO05D004052 2.1e-229 800.4 1339 41.3
Potri.003G000500 Populus trichocarpa HOM05D003404 ORTHO05D004052 2.1e-229 800.4 1336 42.1
GSVIVG01023143001 Vitis vinifera HOM05D003404 ORTHO05D004052 2.1e-229 800.4 1363 41.7
AagrBONN_evm.TU.Sc2ySwM_228.3869 Anthoceros agrestis HOM05D003404 ORTHO05D004052 4.6e-229 799.3 1345 42.0
Gohir.D06G150300 Gossypium hirsutum HOM05D003404 ORTHO05D004052 6.0e-229 798.9 1339 41.2
MSTRG.16466 Avicennia marina HOM05D003404 ORTHO05D004052 3.0e-228 796.6 1339 41.2
TWI59G0557 Tripterygium wilfordii HOM05D003404 ORTHO05D004052 5.1e-228 795.8 1335 40.8
CAN.G855.55 Capsicum annuum HOM05D003404 ORTHO05D004052 6.7e-228 795.4 1334 41.8
Glyma.07G272400 Glycine max HOM05D003404 ORTHO05D004052 1.1e-227 794.7 1306 42.3
QL02p103380 Quercus lobata HOM05D003404 ORTHO05D004052 2.5e-227 793.5 1292 42.3
Migut.B00720 Erythranthe guttata HOM05D003404 ORTHO05D004052 4.3e-227 792.7 1339 41.2
PSO761G0035 Papaver somniferum HOM05D003404 ORTHO05D004052 1.3e-226 791.2 1352 41.3
THA.LOC104805135 Tarenaya hassleriana HOM05D003404 ORTHO05D004052 1.3e-226 791.2 1339 41.5
Lalb_Chr15g0090861 Lupinus albus HOM05D003404 ORTHO05D004052 1.6e-226 790.8 1339 41.6
EL10Ac6g13982 Beta vulgaris HOM05D003404 ORTHO05D004052 6.2e-226 788.9 1338 41.3
Gorai.010G175500 Gossypium raimondii HOM05D003404 ORTHO05D004052 1.4e-225 787.7 1367 40.5
CARHR145090 Cardamine hirsuta HOM05D003404 ORTHO05D004052 4.9e-223 779.2 1336 40.8
AL5G11830 Arabidopsis lyrata HOM05D003404 ORTHO05D004052 1.9e-222 777.3 1336 40.4
AT2G02560 Arabidopsis thaliana HOM05D003404 ORTHO05D004052 3.2e-222 776.5 1336 40.6
ClCG10G007400 Citrullus lanatus HOM05D003404 ORTHO05D004052 3.2e-222 776.5 1324 41.2
Peaxi162Scf00011g01927 Petunia axillaris HOM05D003404 ORTHO05D004052 9.3e-222 775.0 1333 40.9
Thhalv10003535m.g Eutrema salsugineum HOM05D003404 ORTHO05D004052 3.5e-221 773.1 1336 40.5
THA.LOC104801780 Tarenaya hassleriana HOM05D003404 ORTHO05D004052 6.0e-221 772.3 1339 40.9
Zm00001eb207390 Zea mays HOM05D003404 ORTHO05D004052 1.3e-220 771.2 1339 40.2
BolC2t11162H Brassica oleracea HOM05D003404 ORTHO05D004052 2.3e-220 770.4 1342 40.5
BcaC03g17156 Brassica carinata HOM05D003404 ORTHO05D004052 3.0e-220 770.0 1336 40.6
BraA02t08325Z Brassica rapa HOM05D003404 ORTHO05D004052 3.9e-220 769.6 1336 40.5
Carub.0005s0156 Capsella rubella HOM05D003404 ORTHO05D004052 3.9e-220 769.6 1336 40.3
HPP92_001482 Vanilla planifolia HOM05D003404 ORTHO05D004052 3.9e-220 769.6 1330 41.0
Sp2g13790 Schrenkiella parvula HOM05D003404 ORTHO05D004052 6.7e-220 768.8 1336 40.6
BolC7t43839H Brassica oleracea HOM05D003404 ORTHO05D004052 8.7e-220 768.5 1339 40.0
SGA_v2.0_scaffold254G45235 Striga asiatica HOM05D003404 ORTHO05D004052 1.5e-219 767.7 1374 39.8
C02p50810 Brassica napus HOM05D003404 ORTHO05D004052 1.9e-219 767.3 1342 40.4
Aa31LG2G7580 Aethionema arabicum HOM05D003404 ORTHO05D004052 2.5e-219 766.9 1345 40.1
Cc02_g23620 Coffea canephora HOM05D003404 ORTHO05D004052 2.5e-219 766.9 1365 40.2
A02p33040 Brassica napus HOM05D003404 ORTHO05D004052 3.3e-219 766.5 1324 40.6
BcaB07g30328 Brassica carinata HOM05D003404 ORTHO05D004052 3.7e-218 763.1 1336 40.3
C07p33270 Brassica napus HOM05D003404 ORTHO05D004052 1.4e-217 761.1 1328 39.9
Ca_13528_v3 Cicer arietinum L. HOM05D003404 ORTHO05D004052 1.4e-217 761.1 1419 38.2
BraA06t27242Z Brassica rapa HOM05D003404 ORTHO05D004052 2.9e-215 753.4 1336 39.9
DCAR_001727 Daucus carota HOM05D003404 ORTHO05D004052 9.3e-214 748.4 1338 40.0
A06p43570 Brassica napus HOM05D003404 ORTHO05D004052 7.9e-213 745.3 1325 39.8
Haze_09982 Corylus avellana HOM05D003404 ORTHO05D004052 3.9e-212 743.0 1337 39.9
Rhsim05G0115300 Rhododendron simsii HOM05D003404 ORTHO05D004052 2.5e-211 740.3 1497 37.8
MBI06_g16624_MAGBIO Magnolia biondii HOM05D003404 ORTHO05D004052 3.3e-211 740.0 1376 39.8
unitig_27.g24934 Utricularia gibba HOM05D003404 ORTHO05D004052 4.8e-210 736.1 1339 39.4
COL.COLO4_31122 Corchorus olitorius HOM05D003404 ORTHO05D004052 2.9e-207 726.9 1330 39.0
Sabra03G0000100 Salix brachista HOM05D003404 ORTHO05D004052 3.8e-207 726.5 1415 37.6
Lsat_1_v5_gn_9_83361 Lactuca sativa HOM05D003404 ORTHO05D004052 6.5e-207 725.7 1331 39.1
Eucgr.G00074 Eucalyptus grandis HOM05D003404 ORTHO05D004052 2.5e-206 723.8 1290 40.2
vmacro19829 Vaccinium macrocarpon HOM05D003404 ORTHO05D004052 7.2e-206 722.2 1382 39.4
Dinv29680 Davidia involucrata HOM05D003404 ORTHO05D004052 2.3e-204 717.2 1217 41.9
Dinv29635 Davidia involucrata HOM05D003404 ORTHO05D004052 2.0e-203 714.1 1258 40.4
Lj5C285G4 Lonicera japonica HOM05D003404 ORTHO05D004052 2.0e-203 714.1 1338 38.8
CDE05G1207 Ceratophyllum demersum HOM05D003404 ORTHO05D004052 2.8e-202 710.3 1335 38.9
FAN01G2685 Fragaria x ananassa HOM05D003404 ORTHO05D004052 1.3e-199 701.4 1336 39.5
FAN03G0122 Fragaria x ananassa HOM05D003404 ORTHO05D004052 1.0e-196 691.8 1321 39.5
AUR62042960 Chenopodium quinoa HOM05D003404 ORTHO05D004052 2.0e-192 677.6 1342 37.7
Ah.03g136760 Amaranthus hybridus HOM05D003404 ORTHO05D004052 1.0e-191 675.2 1250 39.8
SHI05020 Sapria himalayana HOM05D003404 ORTHO05D004052 3.2e-190 670.2 1331 38.2
AUR62043067 Chenopodium quinoa HOM05D003404 ORTHO05D004052 5.2e-180 636.3 1309 37.3
CBR_g18772 Chara braunii HOM05D003404 ORTHO05D004052 3.7e-170 603.6 1268 37.5
MCO07G702 Micromonas commoda HOM05D003404 ORTHO05D004052 1.2e-165 588.6 1389 39.3
ATR1089G109 Amborella trichopoda HOM05D003404 ORTHO05D004052 3.6e-157 560.5 911 42.4
BcaC06g31225 Brassica carinata HOM05D003404 ORTHO05D004052 1.0e-156 558.9 965 41.2
PRCOL_00003487 Prasinoderma coloniale HOM05D003404 ORTHO05D004052 1.8e-156 558.1 1345 37.0
Sabra01G0174500 Salix brachista HOM05D003404 ORTHO05D004052 2.6e-155 554.3 1181 36.0
Haze_26135 Corylus avellana HOM05D003404 ORTHO05D004052 1.7e-151 541.6 1368 32.2
Nitab4.5_0007689g0020 Nicotiana tabacum HOM05D003404 ORTHO05D004052 1.8e-132 478.4 951 38.3
BcaC06g31227 Brassica carinata HOM05D003404 ORTHO05D004052 7.1e-113 413.3 817 37.5
Cpa.g.sc173.13 Carica papaya HOM05D003404 ORTHO05D004052 1.9e-81 308.9 325 52.3
ATR1089G005 Amborella trichopoda HOM05D003404 ORTHO05D004052 1.2e-62 246.5 407 40.0
Oeu028473.1 Olea europaea HOM05D003404 ORTHO05D004052 4.5e-59 234.6 396 36.1
Sabra01G0174400 Salix brachista HOM05D003404 ORTHO05D004052 4.7e-56 224.6 209 56.0
Oeu028474.1 Olea europaea HOM05D003404 ORTHO05D004052 3.7e-53 214.9 452 38.3
Cfa023835 Carpinus fangiana HOM05D003404 ORTHO05D004052 1.6e-48 199.5 1391 23.9
arahy.Tifrunner.gnm1.ann1.GG9Z8N Arachis hypogaea HOM05D003404 ORTHO05D004052 1.8e-47 196.1 381 37.3
MBI06_g14248_MAGBIO Magnolia biondii HOM05D003404 ORTHO05D004052 8.9e-47 193.7 412 35.7
Os02g0169800 Oryza sativa ssp. japonica HOM05D003404 ORTHO05D004052 1.8e-44 186.0 307 37.5
BcaC06g31226 Brassica carinata HOM05D003404 ORTHO05D004052 7.8e-43 180.6 301 36.2
HPP92_028449 Vanilla planifolia HOM05D003404 ORTHO05D004052 1.3e-42 179.9 199 47.7
arahy.Tifrunner.gnm1.ann1.4Z0G7J Arachis hypogaea HOM05D003404 ORTHO05D004052 2.5e-41 175.6 454 34.8
Actinidia01636 Actinidia chinensis HOM05D003404 ORTHO05D004052 1.7e-37 162.9 202 48.0
Lsat_1_v5_gn_2_40780 Lactuca sativa HOM05D003404 ORTHO05D004052 1.7e-34 152.9 279 38.7
Thecc.06G018800 Theobroma cacao HOM05D003404 ORTHO05D004052 7.3e-33 147.5 127 59.1
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 1.8e-31 142.9 129 55.0
SEGI_11687 Sequoiadendron giganteum HOM05D003404 ORTHO05D000003 6.4e-29 134.4 236 41.5
FAN10G3720 Fragaria x ananassa HOM05D003404 ORTHO05D004052 9.2e-28 130.6 227 37.0
FAN10G0829 Fragaria x ananassa HOM05D003404 ORTHO05D004052 2.7e-27 129.0 227 36.6
arahy.Tifrunner.gnm1.ann1.I4H71T Arachis hypogaea HOM05D003404 ORTHO05D004052 6.6e-26 124.4 236 38.1
Actinidia01637 Actinidia chinensis HOM05D003404 ORTHO05D004052 1.5e-25 123.2 189 43.4
QL09p011372 Quercus lobata HOM05D003404 ORTHO05D004052 1.9e-25 122.9 135 48.1
BcaC06g34049 Brassica carinata HOM05D003404 ORTHO05D004052 3.3e-25 122.1 219 34.7
Zm00001eb178910 Zea mays HOM05D003404 ORTHO05D004052 1.4e-23 116.7 213 37.6
Lsat_1_v5_gn_8_147900 Lactuca sativa HOM05D003404 ORTHO05D004052 1.8e-23 116.3 196 37.2
Lsat_1_v5_gn_3_57841 Lactuca sativa HOM05D003404 ORTHO05D004052 1.7e-21 109.8 168 42.3
Lsat_1_v5_gn_7_61421 Lactuca sativa HOM05D003404 ORTHO05D004052 1.7e-21 109.8 91 61.5
Zm00001eb006600 Zea mays HOM05D003404 ORTHO05D004052 6.6e-18 97.8 197 37.1
SEGI_37814 Sequoiadendron giganteum HOM05D003404 ORTHO05D004052 1.5e-17 96.7 204 29.9
Lsat_1_v5_gn_8_101580 Lactuca sativa HOM05D001355 ORTHO05D004052 1.6e-16 93.2 146 36.3
Actinidia01639 Actinidia chinensis HOM05D003404 ORTHO05D004052 3.6e-16 92.0 76 59.2
Lsat_1_v5_gn_4_49821 Lactuca sativa HOM05D003404 ORTHO05D004052 8.1e-16 90.9 119 49.6
AagrBONN_evm.TU.Sc2ySwM_117.1502 Anthoceros agrestis HOM05D003404 ORTHO05D016498 2.4e-15 89.4 91 51.6
Hund15388 Selenicereus undatus HOM05D003404 ORTHO05D004052 4.0e-15 88.6 456 27.2
Hund15376 Selenicereus undatus HOM05D003404 ORTHO05D004052 1.2e-14 87.0 139 39.6
Lsat_1_v5_gn_3_80641 Lactuca sativa HOM05D003404 ORTHO05D004052 5.8e-14 84.7 126 45.2
HPP92_001465 Vanilla planifolia HOM05D003404 ORTHO05D004052 3.2e-12 79.0 107 40.2
Gohir.A11G223200 Gossypium hirsutum HOM05D003404 ORTHO05D004052 4.2e-12 78.6 113 42.5
Lsat_1_v5_gn_6_52600 Lactuca sativa HOM05D003404 ORTHO05D016190 5.4e-12 78.2 73 53.4
arahy.Tifrunner.gnm1.ann1.7AK1LE Arachis hypogaea HOM05D003404 ORTHO05D004052 7.1e-12 77.8 219 32.9
HPP92_027407 Vanilla planifolia HOM05D003404 ORTHO05D036552 1.3e-10 73.6 61 54.1
TPR.G40778 Trifolium pratense HOM05D003404 ORTHO05D004052 1.1e-09 70.5 68 50.0
TPR.G7178 Trifolium pratense HOM05D003404 ORTHO05D004052 5.6e-09 68.2 71 50.7
CSS0022364 Camellia sinensis var. sinensis HOM05D003404 ORTHO05D000001 9.6e-09 67.4 105 41.0
C07p18110 Brassica napus HOM05D003404 ORTHO05D009938 1.3e-08 67.0 73 49.3
arahy.Tifrunner.gnm1.ann1.L2Q8ZF Arachis hypogaea HOM05D003404 ORTHO05D004052 9.9e-06 57.4 88 43.2


User provided reference genes

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