Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g171461 Chlamydomonas reinhardtii HOM05D006543 ORTHO05D008308 0.0e+00 1085.9 657 100.0
SGA_v2.0_scaffold338G49246 Striga asiatica HOM05D006543 ORTHO05D008308 2.9e-99 367.1 383 49.9
PRCOL_00001606 Prasinoderma coloniale HOM05D006543 ORTHO05D008308 1.1e-98 365.2 382 52.4
Mapoly0005s0190 Marchantia polymorpha HOM05D006543 ORTHO05D008308 1.6e-97 361.3 416 46.6
Pp3c13_23570 Physcomitrium patens HOM05D006543 ORTHO05D008308 1.0e-96 358.6 375 49.6
PGR044G1877 Punica granatum HOM05D006543 ORTHO05D008308 9.5e-95 352.1 378 47.9
Zm00001eb001600 Zea mays HOM05D006543 ORTHO05D008308 2.1e-94 350.9 382 47.9
TAR374G1424 Trochodendron aralioides HOM05D006543 ORTHO05D008308 1.1e-93 348.6 388 45.4
Duzib068G0092 Durio zibethinus HOM05D006543 ORTHO05D008308 1.4e-93 348.2 369 47.7
Ciclev10020014m.g Citrus clementina HOM05D006543 ORTHO05D008308 3.1e-93 347.1 415 45.1
MSTRG.11294 Avicennia marina HOM05D006543 ORTHO05D008308 4.0e-93 346.7 387 45.7
CSS0036636 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 6.8e-93 345.9 383 46.0
CBR_g58805 Chara braunii HOM05D006543 ORTHO05D008308 6.8e-93 345.9 369 49.1
Hma1.2p1_0046F.1_g027560 Hydrangea macrophylla HOM05D006543 ORTHO05D008308 6.8e-93 345.9 378 46.3
Sopen03g030490 Solanum pennellii HOM05D006543 ORTHO05D008308 8.9e-93 345.5 381 44.9
Glyma.04G192800 Glycine max HOM05D006543 ORTHO05D008308 1.2e-92 345.1 513 38.2
Os12g0270100 Oryza sativa ssp. japonica HOM05D006543 ORTHO05D008308 1.2e-92 345.1 392 47.7
Prupe.5G157200 Prunus persica HOM05D006543 ORTHO05D008308 1.5e-92 344.7 401 44.9
Nitab4.5_0004750g0040 Nicotiana tabacum HOM05D006543 ORTHO05D008308 2.0e-92 344.4 381 44.9
PGSC0003DMG400015239 Solanum tuberosum HOM05D006543 ORTHO05D008308 2.6e-92 344.0 381 44.9
MBI06_g38704_MAGBIO Magnolia biondii HOM05D006543 ORTHO05D008308 3.4e-92 343.6 399 43.9
Solyc03g111360.3 Solanum lycopersicum HOM05D006543 ORTHO05D008308 3.4e-92 343.6 381 45.1
MD14G1163800 Malus domestica HOM05D006543 ORTHO05D008308 4.4e-92 343.2 381 46.2
CiPaw.11G012100 Carya illinoinensis HOM05D006543 ORTHO05D008308 5.8e-92 342.8 434 43.3
Actinidia37252 Actinidia chinensis HOM05D006543 ORTHO05D008308 7.5e-92 342.4 389 44.5
Oeu045480.1 Olea europaea HOM05D006543 ORTHO05D008308 9.9e-92 342.0 409 44.0
CANSAT80G2173 Cannabis sativa HOM05D006543 ORTHO05D008308 1.3e-91 341.7 387 45.5
GSVIVG01007545001 Vitis vinifera HOM05D006543 ORTHO05D008308 1.3e-91 341.7 392 45.4
AUR62025730 Chenopodium quinoa HOM05D006543 ORTHO05D008308 1.7e-91 341.3 395 46.1
Nitab4.5_0003282g0090 Nicotiana tabacum HOM05D006543 ORTHO05D008308 2.2e-91 340.9 381 44.6
QL10p005246 Quercus lobata HOM05D006543 ORTHO05D008308 2.2e-91 340.9 393 45.5
Atru.chr9.1008 Acer truncatum HOM05D006543 ORTHO05D008308 4.9e-91 339.7 394 44.4
COL.COLO4_09265 Corchorus olitorius HOM05D006543 ORTHO05D008308 4.9e-91 339.7 388 45.1
RcHm_v2.0_Chr7g0191211 Rosa chinensis HOM05D006543 ORTHO05D008308 4.9e-91 339.7 401 44.6
Rhsim12G0172000 Rhododendron simsii HOM05D006543 ORTHO05D008308 8.3e-91 339.0 390 43.8
AUR62001276 Chenopodium quinoa HOM05D006543 ORTHO05D008308 1.4e-90 338.2 395 45.6
Cc04_g10340 Coffea canephora HOM05D006543 ORTHO05D008308 1.4e-90 338.2 394 44.4
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 1.4e-90 338.2 388 44.6
TWI14G0972 Tripterygium wilfordii HOM05D006543 ORTHO05D008308 1.4e-90 338.2 388 44.6
THA.LOC104818195 Tarenaya hassleriana HOM05D006543 ORTHO05D008308 1.9e-90 337.8 398 44.0
Thecc.03G122600 Theobroma cacao HOM05D006543 ORTHO05D008308 2.4e-90 337.4 406 44.8
vmacro16708 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 2.4e-90 337.4 391 44.2
CAN.G352.10 Capsicum annuum HOM05D006543 ORTHO05D008308 3.2e-90 337.0 387 43.7
Phvul.009G169000 Phaseolus vulgaris HOM05D006543 ORTHO05D008308 3.2e-90 337.0 386 44.6
Gorai.006G270300 Gossypium raimondii HOM05D006543 ORTHO05D008308 4.1e-90 336.7 391 44.2
Aqoxy5G03584 Aquilegia oxysepala HOM05D006543 ORTHO05D008308 5.4e-90 336.3 500 39.8
Sabra12G0067500 Salix brachista HOM05D006543 ORTHO05D008308 5.4e-90 336.3 500 38.6
SEGI_06622 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 5.4e-90 336.3 366 46.7
arahy.Tifrunner.gnm1.ann1.YD5AXN Arachis hypogaea HOM05D006543 ORTHO05D008308 9.2e-90 335.5 381 43.3
Psat5g141840 Pisum sativum HOM05D006543 ORTHO05D008308 9.2e-90 335.5 383 43.3
arahy.Tifrunner.gnm1.ann1.8LT8QW Arachis hypogaea HOM05D006543 ORTHO05D008308 1.2e-89 335.1 381 43.3
Sed0023544 Sechium edule HOM05D006543 ORTHO05D008308 1.6e-89 334.7 388 45.9
Carub.0008s2404 Capsella rubella HOM05D006543 ORTHO05D008308 2.7e-89 334.0 390 45.4
Gohir.A09G244900 Gossypium hirsutum HOM05D006543 ORTHO05D008308 2.7e-89 334.0 391 44.2
Peaxi162Scf00089g00625 Petunia axillaris HOM05D006543 ORTHO05D008308 2.7e-89 334.0 381 44.4
CDE04G0939 Ceratophyllum demersum HOM05D006543 ORTHO05D008308 3.5e-89 333.6 381 43.3
AT5G63290 Arabidopsis thaliana HOM05D006543 ORTHO05D008308 4.6e-89 333.2 397 44.3
Medtr3g075110 Medicago truncatula HOM05D006543 ORTHO05D008308 6.0e-89 332.8 388 42.8
Sp2g26410 Schrenkiella parvula HOM05D006543 ORTHO05D008308 6.0e-89 332.8 393 43.8
ECA246G2708 Erigeron canadensis HOM05D006543 ORTHO05D008308 7.8e-89 332.4 393 45.0
Potri.012G092900 Populus trichocarpa HOM05D006543 ORTHO05D008308 7.8e-89 332.4 500 38.2
AL8G40370 Arabidopsis lyrata HOM05D006543 ORTHO05D008308 1.0e-88 332.0 388 45.9
Lalb_Chr08g0236931 Lupinus albus HOM05D006543 ORTHO05D008308 1.0e-88 332.0 379 44.1
TPR.G24245 Trifolium pratense HOM05D006543 ORTHO05D008308 1.3e-88 331.6 386 44.0
FvH4_5g07331 Fragaria vesca HOM05D006543 ORTHO05D008308 3.0e-88 330.5 405 44.0
EL10Ac7g18072 Beta vulgaris HOM05D006543 ORTHO05D008308 3.9e-88 330.1 413 44.6
MELO3C026233.2 Cucumis melo HOM05D006543 ORTHO05D008308 3.9e-88 330.1 392 44.1
Lsat_1_v5_gn_5_13221 Lactuca sativa HOM05D006543 ORTHO05D008308 3.9e-88 330.1 389 45.0
Lj5A100T59 Lonicera japonica HOM05D006543 ORTHO05D008308 3.9e-88 330.1 392 42.6
Aa31LG1G18710 Aethionema arabicum HOM05D006543 ORTHO05D008308 8.6e-88 328.9 393 45.0
A09p08200 Brassica napus HOM05D006543 ORTHO05D008308 1.1e-87 328.6 394 44.2
C09p09260 Brassica napus HOM05D006543 ORTHO05D008308 1.1e-87 328.6 393 44.0
BolC9t53839H Brassica oleracea HOM05D006543 ORTHO05D008308 1.1e-87 328.6 393 44.0
BraA09t36471Z Brassica rapa HOM05D006543 ORTHO05D008308 1.1e-87 328.6 394 44.2
Thhalv10004112m.g Eutrema salsugineum HOM05D006543 ORTHO05D008308 1.9e-87 327.8 390 44.1
CsaV3_1G000810 Cucumis sativus L. HOM05D006543 ORTHO05D008308 2.5e-87 327.4 392 44.1
Manes.06G115100 Manihot esculenta HOM05D006543 ORTHO05D008308 3.3e-87 327.0 388 44.6
Hund18538 Selenicereus undatus HOM05D006543 ORTHO05D008308 3.3e-87 327.0 372 46.2
BcaNung06574 Brassica carinata HOM05D006543 ORTHO05D008308 7.3e-87 325.9 393 43.8
Sc04g0000970 Simmondsia chinensis HOM05D006543 ORTHO05D008308 7.3e-87 325.9 377 44.8
MCO01G029 Micromonas commoda HOM05D006543 ORTHO05D008308 1.2e-86 325.1 393 46.1
PSO729G0022 Papaver somniferum HOM05D006543 ORTHO05D008308 1.6e-86 324.7 391 45.3
Lj1g0002208 Lotus japonicus HOM05D006543 ORTHO05D008308 3.6e-86 323.6 399 42.4
HanXRQChr05g0154751 Helianthus annuus HOM05D006543 ORTHO05D008308 6.2e-86 322.8 400 42.0
unitig_22.g5878 Utricularia gibba HOM05D006543 ORTHO05D008308 4.0e-85 320.1 351 47.0
Migut.I00467 Erythranthe guttata HOM05D006543 ORTHO05D008308 2.0e-84 317.8 409 41.8
ClCG06G017630 Citrullus lanatus HOM05D006543 ORTHO05D008308 1.3e-83 315.1 392 43.1
SMO364G0036 Selaginella moellendorffii HOM05D006543 ORTHO05D008308 7.1e-82 309.3 400 43.0
Ah.15g095320 Amaranthus hybridus HOM05D006543 ORTHO05D008308 7.8e-81 305.8 388 41.5
Gohir.D09G245800 Gossypium hirsutum HOM05D006543 ORTHO05D008308 4.9e-75 286.6 339 44.0
Lsat_1_v5_gn_4_53181 Lactuca sativa HOM05D006543 ORTHO05D008308 5.4e-74 283.1 403 40.9
FvH4_5g07462 Fragaria vesca HOM05D006543 ORTHO05D008308 4.3e-71 273.5 299 47.8
AagrBONN_evm.TU.Sc2ySwM_344.2040 Anthoceros agrestis HOM05D006543 ORTHO05D008308 9.6e-71 272.3 455 37.1
Ca_16091_v3 Cicer arietinum L. HOM05D006543 ORTHO05D008308 5.1e-64 250.0 303 43.6
Dinv11106 Davidia involucrata HOM05D006543 ORTHO05D008308 1.1e-61 242.3 283 44.5
VMungo1309G1872 Vigna mungo HOM05D006543 ORTHO05D008308 3.8e-59 233.8 279 41.6
ATR0733G153 Amborella trichopoda HOM05D006543 ORTHO05D008308 7.1e-58 229.6 319 39.8
BcaB04g19911 Brassica carinata HOM05D006543 ORTHO05D008308 1.8e-56 224.9 217 52.1
Nn3g16581 Nelumbo nucifera HOM05D006543 ORTHO05D008308 3.0e-56 224.2 206 54.4
CARHR277150 Cardamine hirsuta HOM05D006543 ORTHO05D008308 2.1e-54 218.0 222 49.5
SEGI_28812 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 3.1e-45 187.6 172 51.7
vmacro23154 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 2.0e-39 168.3 216 41.7
MD06G1157200 Malus domestica HOM05D006543 ORTHO05D008308 1.5e-36 158.7 204 44.1
vmacro16659 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 3.4e-36 157.5 232 39.2
Glyma.06G173133 Glycine max HOM05D006543 ORTHO05D008308 2.5e-34 151.4 323 31.0
Actinidia36787 Actinidia chinensis HOM05D006543 ORTHO05D008308 5.1e-32 143.7 247 35.2
CSS0033277 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 2.8e-30 137.9 260 34.2
Glyma.06G173067 Glycine max HOM05D006543 ORTHO05D008308 7.7e-28 129.8 167 41.3
CAN.G352.9 Capsicum annuum HOM05D006543 ORTHO05D003127 3.8e-27 127.5 101 56.4
BcaB01g05367 Brassica carinata HOM05D006543 ORTHO05D008308 3.2e-26 124.4 178 42.1
Oeu045471.1 Olea europaea HOM05D006543 ORTHO05D008308 1.6e-25 122.1 128 47.7
CARHR277160 Cardamine hirsuta HOM05D006543 ORTHO05D008308 8.8e-24 116.3 166 36.7
Oeu037566.1 Olea europaea HOM05D006543 ORTHO05D008308 2.2e-22 111.7 126 45.2
MD06G1156000 Malus domestica HOM05D006543 ORTHO05D008308 3.3e-15 87.8 115 42.6
FvH4_5g07400 Fragaria vesca HOM05D006543 ORTHO05D008308 3.7e-14 84.3 106 45.3


User provided reference genes

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