Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g156100 Chlamydomonas reinhardtii HOM05D003241 ORTHO05D003812 0.0e+00 1280.4 852 100.0
arahy.Tifrunner.gnm1.ann1.2W1DSR Arachis hypogaea HOM05D003241 ORTHO05D003812 3.5e-33 147.9 715 29.0
Duzib213G0093 Durio zibethinus HOM05D003241 ORTHO05D003812 3.5e-33 147.9 718 28.6
Medtr1g083910 Medicago truncatula HOM05D003241 ORTHO05D003812 1.3e-32 146.0 721 28.3
Eucgr.J03092 Eucalyptus grandis HOM05D003241 ORTHO05D003812 3.0e-32 144.8 769 27.3
arahy.Tifrunner.gnm1.ann1.61N80Q Arachis hypogaea HOM05D003241 ORTHO05D003812 3.9e-32 144.4 718 28.8
Gohir.A04G045600 Gossypium hirsutum HOM05D003241 ORTHO05D003812 3.9e-32 144.4 713 28.3
Gohir.D05G337200 Gossypium hirsutum HOM05D003241 ORTHO05D003812 1.1e-31 142.9 713 28.2
Gorai.009G361400 Gossypium raimondii HOM05D003241 ORTHO05D003812 1.1e-31 142.9 713 28.2
BolC9t58862H Brassica oleracea HOM05D003241 ORTHO05D003812 9.6e-31 139.8 720 27.4
Nn5g27739 Nelumbo nucifera HOM05D003241 ORTHO05D003812 9.6e-31 139.8 718 26.9
vmacro13976 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 9.6e-31 139.8 717 28.2
Dinv09319 Davidia involucrata HOM05D003241 ORTHO05D003812 2.1e-30 138.7 709 27.6
Haze_00894 Corylus avellana HOM05D003241 ORTHO05D003812 4.8e-30 137.5 720 27.4
Dinv19008 Davidia involucrata HOM05D003241 ORTHO05D003812 6.2e-30 137.1 711 27.7
Lj3g0022607 Lotus japonicus HOM05D003241 ORTHO05D003812 6.2e-30 137.1 721 27.0
TWI32G0731 Tripterygium wilfordii HOM05D003241 ORTHO05D003812 6.2e-30 137.1 713 27.8
A10p22440 Brassica napus HOM05D003241 ORTHO05D003812 1.1e-29 136.3 720 27.1
C09p60290 Brassica napus HOM05D003241 ORTHO05D003812 1.1e-29 136.3 720 27.2
BraA10t44303Z Brassica rapa HOM05D003241 ORTHO05D003812 1.1e-29 136.3 720 27.1
Ca_13374_v3 Cicer arietinum L. HOM05D003241 ORTHO05D003812 2.4e-29 135.2 722 27.1
Lalb_Chr03g0032261 Lupinus albus HOM05D003241 ORTHO05D003812 2.4e-29 135.2 715 27.7
QL06p002249 Quercus lobata HOM05D003241 ORTHO05D003812 2.4e-29 135.2 719 27.5
Cfa015650 Carpinus fangiana HOM05D003241 ORTHO05D003812 3.1e-29 134.8 716 27.8
CAN.G321.38 Capsicum annuum HOM05D003241 ORTHO05D003812 4.0e-29 134.4 723 29.2
Glyma.08G229600 Glycine max HOM05D003241 ORTHO05D003812 4.0e-29 134.4 772 26.0
QL06p002393 Quercus lobata HOM05D003241 ORTHO05D003812 4.0e-29 134.4 719 27.5
Thecc.07G135300 Theobroma cacao HOM05D003241 ORTHO05D003812 5.3e-29 134.0 730 27.1
Ciclev10000233m.g Citrus clementina HOM05D003241 ORTHO05D003812 1.2e-28 132.9 835 25.6
Glyma.07G220800 Glycine max HOM05D003241 ORTHO05D003812 1.2e-28 132.9 715 26.6
Lalb_Chr19g0130441 Lupinus albus HOM05D003241 ORTHO05D003812 1.2e-28 132.9 715 27.6
ECA248G0833 Erigeron canadensis HOM05D003241 ORTHO05D003812 2.0e-28 132.1 713 26.6
Manes.16G074400 Manihot esculenta HOM05D003241 ORTHO05D003812 7.6e-28 130.2 718 27.7
SEGI_01763 Sequoiadendron giganteum HOM05D003241 ORTHO05D003812 1.7e-27 129.0 720 29.4
CiPaw.02G097400 Carya illinoinensis HOM05D003241 ORTHO05D003812 2.9e-27 128.3 632 28.8
HPP92_003413 Vanilla planifolia HOM05D003241 ORTHO05D008621 2.9e-27 128.3 710 27.3
Peaxi162Scf00296g00721 Petunia axillaris HOM05D003241 ORTHO05D003812 6.5e-27 127.1 725 28.0
Phvul.011G184800 Phaseolus vulgaris HOM05D003241 ORTHO05D003812 6.5e-27 127.1 780 25.9
TAR625G1302 Trochodendron aralioides HOM05D003241 ORTHO05D003812 6.5e-27 127.1 623 27.8
GSVIVG01035173001 Vitis vinifera HOM05D003241 ORTHO05D003812 6.5e-27 127.1 832 25.5
Carub.0006s1500 Capsella rubella HOM05D003241 ORTHO05D003812 1.1e-26 126.3 729 26.7
AT5G16780 Arabidopsis thaliana HOM05D003241 ORTHO05D003812 1.9e-26 125.6 726 26.6
Nitab4.5_0004385g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 2.5e-26 125.2 711 27.8
AL6G27800 Arabidopsis lyrata HOM05D003241 ORTHO05D003812 3.2e-26 124.8 726 26.0
Nitab4.5_0004325g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 4.2e-26 124.4 711 27.8
Sopen11g004250 Solanum pennellii HOM05D003241 ORTHO05D003812 4.2e-26 124.4 711 28.1
CARHR196380 Cardamine hirsuta HOM05D003241 ORTHO05D003812 9.3e-26 123.2 726 26.7
Medtr1g032020 Medicago truncatula HOM05D003241 ORTHO05D003812 9.3e-26 123.2 643 26.4
Medtr1g032350 Medicago truncatula HOM05D003241 ORTHO05D003812 9.3e-26 123.2 643 26.4
MELO3C022204.2 Cucumis melo HOM05D003241 ORTHO05D003812 1.2e-25 122.9 777 25.7
Pp3c15_10170 Physcomitrium patens HOM05D003241 ORTHO05D003812 2.1e-25 122.1 678 27.9
Atru.chr4.2711 Acer truncatum HOM05D003241 ORTHO05D003812 2.7e-25 121.7 785 25.5
TPR.G2613 Trifolium pratense HOM05D003241 ORTHO05D003812 2.7e-25 121.7 619 27.6
PRCOL_00003741 Prasinoderma coloniale HOM05D003241 ORTHO05D003812 3.5e-25 121.3 819 29.9
Zm00001eb140630 Zea mays HOM05D003241 ORTHO05D003812 3.5e-25 121.3 790 26.1
CsaV3_5G040300 Cucumis sativus L. HOM05D003241 ORTHO05D003812 4.6e-25 120.9 720 27.2
Duzib268G1256 Durio zibethinus HOM05D003241 ORTHO05D003812 4.6e-25 120.9 779 24.8
Aa31LG11G12850 Aethionema arabicum HOM05D003241 ORTHO05D003812 2.3e-24 118.6 717 25.9
SMO361G0171 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 2.3e-24 118.6 716 24.9
MCO08G320 Micromonas commoda HOM05D003241 ORTHO05D003812 3.0e-24 118.2 774 29.5
TAR381G1550 Trochodendron aralioides HOM05D003241 ORTHO05D003812 8.7e-24 116.7 625 27.2
PSO339G6261 Papaver somniferum HOM05D003241 ORTHO05D003812 1.5e-23 115.9 713 26.8
PGSC0003DMG400007426 Solanum tuberosum HOM05D003241 ORTHO05D003812 1.9e-23 115.5 711 27.1
Lsat_1_v5_gn_1_54260 Lactuca sativa HOM05D003241 ORTHO05D003812 2.5e-23 115.2 768 24.9
PSO063G3239 Papaver somniferum HOM05D003241 ORTHO05D003812 5.7e-23 114.0 715 26.2
BcaC04g18848 Brassica carinata HOM05D003241 ORTHO05D003812 7.4e-23 113.6 233 34.8
PSO339G1389 Papaver somniferum HOM05D003241 ORTHO05D003812 7.4e-23 113.6 627 26.6
Potri.001G082100 Populus trichocarpa HOM05D003241 ORTHO05D003812 7.4e-23 113.6 717 25.9
TAR571G0002 Trochodendron aralioides HOM05D003241 ORTHO05D003812 7.4e-23 113.6 623 26.8
SalBow3G1087 Salvia bowleyana HOM05D003241 ORTHO05D003812 9.7e-23 113.2 621 28.0
Aqoxy4G03221 Aquilegia oxysepala HOM05D003241 ORTHO05D003812 1.3e-22 112.8 826 24.7
AUR62034840 Chenopodium quinoa HOM05D003241 ORTHO05D003812 1.3e-22 112.8 724 25.7
CBR_g32002 Chara braunii HOM05D003241 ORTHO05D003812 3.7e-22 111.3 725 26.3
Sed0020388 Sechium edule HOM05D003241 ORTHO05D003812 3.7e-22 111.3 716 27.1
ATR1098G045 Amborella trichopoda HOM05D003241 ORTHO05D003812 4.8e-22 110.9 776 23.8
BcaC04g18849 Brassica carinata HOM05D003241 ORTHO05D003812 4.8e-22 110.9 232 34.5
Thhalv10012684m.g Eutrema salsugineum HOM05D003241 ORTHO05D003812 8.2e-22 110.2 724 26.1
PSO013G0353 Papaver somniferum HOM05D003241 ORTHO05D003812 1.1e-21 109.8 715 25.9
PGR031G3475 Punica granatum HOM05D003241 ORTHO05D003812 1.1e-21 109.8 712 26.1
COL.COLO4_17461 Corchorus olitorius HOM05D003241 ORTHO05D003812 4.1e-21 107.8 693 25.3
MD16G1194300 Malus domestica HOM05D003241 ORTHO05D003812 4.1e-21 107.8 741 26.0
AagrBONN_evm.TU.Sc2ySwM_344.1153__1154 Anthoceros agrestis HOM05D003241 ORTHO05D003812 6.9e-21 107.1 627 29.0
Actinidia29972 Actinidia chinensis HOM05D003241 ORTHO05D003812 1.2e-20 106.3 238 33.6
MD13G1193700 Malus domestica HOM05D003241 ORTHO05D003812 1.2e-20 106.3 741 26.2
ClCG08G000490 Citrullus lanatus HOM05D003241 ORTHO05D003812 2.6e-20 105.1 260 31.2
Migut.J00827 Erythranthe guttata HOM05D003241 ORTHO05D003812 5.9e-20 104.0 619 26.3
Psat6g151960 Pisum sativum HOM05D003241 ORTHO05D003812 5.9e-20 104.0 141 41.8
Hund17599 Selenicereus undatus HOM05D003241 ORTHO05D003812 7.7e-20 103.6 723 24.6
Lj2A813G14 Lonicera japonica HOM05D003241 ORTHO05D003812 1.0e-19 103.2 743 26.6
AUR62018246 Chenopodium quinoa HOM05D003241 ORTHO05D003812 1.3e-19 102.8 725 25.4
ECA248G0244 Erigeron canadensis HOM05D003241 ORTHO05D003812 8.5e-19 100.1 674 25.7
Mapoly0063s0006 Marchantia polymorpha HOM05D003241 ORTHO05D003812 1.1e-18 99.8 682 26.0
SGA_v2.0_scaffold31G12724 Striga asiatica HOM05D003241 ORTHO05D003812 1.1e-18 99.8 748 25.3
Os02g0511500 Oryza sativa ssp. japonica HOM05D003241 ORTHO05D003812 1.4e-18 99.4 156 38.5
vmacro19776 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 4.2e-18 97.8 140 40.7
DCAR_019828 Daucus carota HOM05D003241 ORTHO05D003812 5.5e-18 97.4 788 24.9
vmacro19775 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 5.5e-18 97.4 141 40.4
MBI18_g28212_MAGBIO Magnolia biondii HOM05D003241 ORTHO05D003812 3.6e-17 94.7 772 23.7
Oeu058578.1 Olea europaea HOM05D003241 ORTHO05D003812 6.1e-17 94.0 685 24.7
Cpa.g.sc115.47 Carica papaya HOM05D003241 ORTHO05D003812 1.4e-16 92.8 724 24.0
Migut.N01793 Erythranthe guttata HOM05D003241 ORTHO05D003812 1.4e-16 92.8 138 39.1
Lj2C819G2 Lonicera japonica HOM05D003241 ORTHO05D003812 1.8e-16 92.4 271 31.7
FAN15G1779 Fragaria x ananassa HOM05D003241 ORTHO05D003812 2.3e-16 92.0 737 23.6
RcHm_v2.0_Chr4g0416151 Rosa chinensis HOM05D003241 ORTHO05D003812 2.3e-16 92.0 737 24.3
FAN27G2894 Fragaria x ananassa HOM05D003241 ORTHO05D003812 3.9e-16 91.3 737 24.2
RcHm_v2.0_Chr4g0416161 Rosa chinensis HOM05D003241 ORTHO05D003812 5.1e-16 90.9 648 25.3
HanXRQChr09g0244631 Helianthus annuus HOM05D003241 ORTHO05D003812 6.7e-16 90.5 721 23.9
Rhsim01G0112900 Rhododendron simsii HOM05D003241 ORTHO05D003812 6.7e-16 90.5 577 27.7
Sc22g0003580 Simmondsia chinensis HOM05D003241 ORTHO05D003812 8.8e-16 90.1 344 36.6
Solyc11g008470.2 Solanum lycopersicum HOM05D003241 ORTHO05D003812 1.1e-15 89.7 634 26.8
FvH4_4g15641 Fragaria vesca HOM05D003241 ORTHO05D003812 2.0e-15 89.0 737 24.2
EL10Ac6g15598 Beta vulgaris HOM05D003241 ORTHO05D003812 3.3e-15 88.2 722 24.9
Oeu011820.1 Olea europaea HOM05D003241 ORTHO05D003812 3.3e-15 88.2 771 23.1
FAN12G3728 Fragaria x ananassa HOM05D003241 ORTHO05D003812 4.3e-15 87.8 737 24.3
QL09p049212 Quercus lobata HOM05D003241 ORTHO05D003812 2.2e-14 85.5 296 28.7
Eucgr.L01432 Eucalyptus grandis HOM05D003241 ORTHO05D003812 2.8e-14 85.1 655 25.6
VMungo1127G0135 Vigna mungo HOM05D003241 ORTHO05D003812 3.7e-14 84.7 620 26.1
unitig_77.g31483 Utricularia gibba HOM05D003241 ORTHO05D003812 1.4e-13 82.8 731 24.2
FAN20G2531 Fragaria x ananassa HOM05D003241 ORTHO05D003812 3.1e-13 81.6 738 23.6
Prupe.1G014100 Prunus persica HOM05D003241 ORTHO05D003812 4.1e-13 81.3 741 25.0
Psat0s3089g0040 Pisum sativum HOM05D003241 ORTHO05D003812 5.3e-13 80.9 626 25.9
Nitab4.5_0002344g0060 Nicotiana tabacum HOM05D003241 ORTHO05D003812 6.9e-13 80.5 115 39.1
CDE03G0251 Ceratophyllum demersum HOM05D003241 ORTHO05D003812 4.5e-12 77.8 156 34.0
FAN17G1371 Fragaria x ananassa HOM05D003241 ORTHO05D003812 5.9e-12 77.4 734 23.2
Solyc01g099380.4 Solanum lycopersicum HOM05D003241 ORTHO05D003812 5.9e-12 77.4 130 39.2
PGSC0003DMG400024746 Solanum tuberosum HOM05D003241 ORTHO05D003812 1.0e-11 76.6 142 37.3
QL09p049206 Quercus lobata HOM05D003241 ORTHO05D003812 3.8e-11 74.7 236 33.5
COL.COLO4_13873 Corchorus olitorius HOM05D003241 ORTHO05D003812 1.9e-10 72.4 141 34.0
BcaC04g18847 Brassica carinata HOM05D003241 ORTHO05D003812 4.2e-10 71.2 166 32.5
Sopen01g042940 Solanum pennellii HOM05D003241 ORTHO05D003812 5.5e-10 70.9 116 39.7
Lj6g0011042 Lotus japonicus HOM05D003241 ORTHO05D003812 7.2e-10 70.5 183 33.3
Nitab4.5_0014335g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 4.7e-09 67.8 98 39.8
SMO111G0075 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 6.1e-09 67.4 140 35.0
CSS0028609 Camellia sinensis var. sinensis HOM05D003241 ORTHO05D003812 7.9e-09 67.0 638 23.8
AagrBONN_evm.TU.Sc2ySwM_117.3514 Anthoceros agrestis HOM05D003241 ORTHO05D003812 1.0e-08 66.6 137 40.1
unitig_749.g14191 Utricularia gibba HOM05D003241 ORTHO05D003812 1.4e-08 66.2 610 25.4
Actinidia38515 Actinidia chinensis HOM05D003241 ORTHO05D003812 3.0e-08 65.1 573 24.8
Eucgr.L02270 Eucalyptus grandis HOM05D001083 ORTHO05D003812 3.9e-08 64.7 87 42.5
QL11p041824 Quercus lobata HOM05D003241 ORTHO05D003812 5.1e-08 64.3 528 26.5
Glyma.15G216300 Glycine max HOM05D003241 ORTHO05D003812 6.7e-08 63.9 316 28.2
Peaxi162Scf00067g00244 Petunia axillaris HOM05D003241 ORTHO05D003812 3.3e-07 61.6 121 33.1
Actinidia21372 Actinidia chinensis HOM05D003241 ORTHO05D003812 4.4e-07 61.2 142 30.3
SMO351G0236 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 4.4e-07 61.2 141 34.0
AL3G27010 Arabidopsis lyrata HOM05D003241 ORTHO05D003812 7.4e-07 60.5 145 31.0
FAN22G0104 Fragaria x ananassa HOM05D003241 ORTHO05D003812 7.4e-07 60.5 161 30.4
AagrBONN_evm.TU.Sc2ySwM_117.3043 Anthoceros agrestis HOM05D003241 ORTHO05D003812 9.7e-07 60.1 265 29.1
SMO111G0085 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 9.7e-07 60.1 140 32.9
AT3G14700 Arabidopsis thaliana HOM05D003241 ORTHO05D003812 1.7e-06 59.3 150 29.3
BcaB06g25362 Brassica carinata HOM05D003241 ORTHO05D003812 2.8e-06 58.5 154 34.4
Atru.chr1.2009 Acer truncatum HOM05D003241 ORTHO05D003812 4.8e-06 57.8 139 33.1
A05p34740 Brassica napus HOM05D003241 ORTHO05D003812 4.8e-06 57.8 158 34.2
BraA05t22289Z Brassica rapa HOM05D003241 ORTHO05D003812 4.8e-06 57.8 146 32.9


User provided reference genes

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