Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre02.g145300 Chlamydomonas reinhardtii HOM05D005418 ORTHO05D006724 2.9e-99 365.2 176 100.0
SEGI_01195 Sequoiadendron giganteum HOM05D005418 ORTHO05D006724 1.9e-58 229.6 178 62.4
Mapoly0058s0033 Marchantia polymorpha HOM05D005418 ORTHO05D006724 1.6e-57 226.5 178 61.8
SalBow1G6390 Salvia bowleyana HOM05D005418 ORTHO05D006724 2.3e-56 222.6 178 58.4
Atru.chr9.1604 Acer truncatum HOM05D005418 ORTHO05D006724 4.0e-56 221.9 178 59.6
Nn1g06291 Nelumbo nucifera HOM05D005418 ORTHO05D006724 4.0e-56 221.9 178 59.6
Duzib128G1895 Durio zibethinus HOM05D005418 ORTHO05D006724 6.8e-56 221.1 178 59.0
Potri.015G036600 Populus trichocarpa HOM05D005418 ORTHO05D006724 3.4e-55 218.8 178 58.4
SGA_v2.0_scaffold40G15645 Striga asiatica HOM05D005418 ORTHO05D006724 5.7e-55 218.0 178 56.7
HanXRQChr14g0431131 Helianthus annuus HOM05D005418 ORTHO05D006724 7.5e-55 217.6 178 57.3
CSS0002924 Camellia sinensis var. sinensis HOM05D005418 ORTHO05D006724 9.8e-55 217.2 178 59.0
CANSAT78G1374 Cannabis sativa HOM05D005418 ORTHO05D006724 1.3e-54 216.9 178 58.4
Ciclev10005966m.g Citrus clementina HOM05D005418 ORTHO05D006724 1.3e-54 216.9 178 56.7
Migut.D01215 Erythranthe guttata HOM05D005418 ORTHO05D006724 1.7e-54 216.5 178 58.4
Sed0019275 Sechium edule HOM05D005418 ORTHO05D006724 1.7e-54 216.5 178 58.4
GSVIVG01037420001 Vitis vinifera HOM05D005418 ORTHO05D006724 1.7e-54 216.5 178 59.0
Actinidia09063 Actinidia chinensis HOM05D005418 ORTHO05D006724 2.2e-54 216.1 178 59.0
CARHR066900 Cardamine hirsuta HOM05D005418 ORTHO05D006724 2.2e-54 216.1 178 56.7
MD14G1240000 Malus domestica HOM05D005418 ORTHO05D006724 2.2e-54 216.1 178 57.3
vmacro17855 Vaccinium macrocarpon HOM05D005418 ORTHO05D006724 2.2e-54 216.1 178 57.3
arahy.Tifrunner.gnm1.ann1.20VKS9 Arachis hypogaea HOM05D005418 ORTHO05D006724 2.9e-54 215.7 178 58.4
Cfa005619 Carpinus fangiana HOM05D005418 ORTHO05D006724 2.9e-54 215.7 178 56.7
ECA238G0283 Erigeron canadensis HOM05D005418 ORTHO05D006724 2.9e-54 215.7 178 57.3
PSO210G6190 Papaver somniferum HOM05D005418 ORTHO05D006724 2.9e-54 215.7 178 57.3
Pp3c8_14260 Physcomitrium patens HOM05D005418 ORTHO05D006724 2.9e-54 215.7 178 57.9
CsaV3_1G004910 Cucumis sativus L. HOM05D005418 ORTHO05D006724 3.7e-54 215.3 178 57.9
TAR365G0064 Trochodendron aralioides HOM05D005418 ORTHO05D006724 3.7e-54 215.3 178 57.9
MELO3C001923.2 Cucumis melo HOM05D005418 ORTHO05D006724 4.9e-54 214.9 178 57.9
Sp5g29010 Schrenkiella parvula HOM05D005418 ORTHO05D006724 4.9e-54 214.9 178 55.6
Solyc03g097990.3 Solanum lycopersicum HOM05D005418 ORTHO05D006724 4.9e-54 214.9 178 57.3
AL2G33630 Arabidopsis lyrata HOM05D005418 ORTHO05D006724 6.4e-54 214.5 178 56.2
Thhalv10019100m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 6.4e-54 214.5 178 56.2
Sopen03g028700 Solanum pennellii HOM05D005418 ORTHO05D006724 6.4e-54 214.5 178 57.3
MSTRG.9356 Avicennia marina HOM05D005418 ORTHO05D006724 8.3e-54 214.2 178 55.6
MBI17_g10951_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 8.3e-54 214.2 174 59.2
Manes.06G002300 Manihot esculenta HOM05D005418 ORTHO05D006724 8.3e-54 214.2 178 56.7
Thecc.10G098100 Theobroma cacao HOM05D005418 ORTHO05D006724 8.3e-54 214.2 178 57.3
FAN08G1767 Fragaria x ananassa HOM05D005418 ORTHO05D006724 1.1e-53 213.8 178 56.2
Gohir.A05G289300 Gossypium hirsutum HOM05D005418 ORTHO05D006724 1.1e-53 213.8 178 56.7
Gohir.D05G290700 Gossypium hirsutum HOM05D005418 ORTHO05D006724 1.1e-53 213.8 178 56.7
Gorai.009G305700 Gossypium raimondii HOM05D005418 ORTHO05D006724 1.1e-53 213.8 178 56.7
PGSC0003DMG400033680 Solanum tuberosum HOM05D005418 ORTHO05D006724 1.1e-53 213.8 178 57.3
BolC6t38495H Brassica oleracea HOM05D005418 ORTHO05D006724 1.8e-53 213.0 178 55.6
Carub.0002s2057 Capsella rubella HOM05D005418 ORTHO05D006724 1.8e-53 213.0 178 55.6
ATR0827G099 Amborella trichopoda HOM05D005418 ORTHO05D006724 2.4e-53 212.6 178 57.3
AT1G73820 Arabidopsis thaliana HOM05D005418 ORTHO05D006724 2.4e-53 212.6 178 55.6
BcaB03g15730 Brassica carinata HOM05D005418 ORTHO05D006724 2.4e-53 212.6 178 55.6
BcaC08g45620 Brassica carinata HOM05D005418 ORTHO05D006724 2.4e-53 212.6 178 55.6
A07p29640 Brassica napus HOM05D005418 ORTHO05D006724 2.4e-53 212.6 178 55.6
BraA07t30605Z Brassica rapa HOM05D005418 ORTHO05D006724 2.4e-53 212.6 178 55.6
Cpa.g.sc64.48 Carica papaya HOM05D005418 ORTHO05D006724 2.4e-53 212.6 178 55.6
Aqoxy5G00519 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 3.2e-53 212.2 178 57.3
Cc04_g09290 Coffea canephora HOM05D005418 ORTHO05D006724 3.2e-53 212.2 178 55.6
Phvul.004G147300 Phaseolus vulgaris HOM05D005418 ORTHO05D006724 3.2e-53 212.2 178 56.2
Aqoxy6G02988 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 4.1e-53 211.8 178 57.3
FAN18G2901 Fragaria x ananassa HOM05D005418 ORTHO05D006724 4.1e-53 211.8 178 56.2
Prupe.5G237600 Prunus persica HOM05D005418 ORTHO05D006724 4.1e-53 211.8 178 57.3
VMungo0464G1360 Vigna mungo HOM05D005418 ORTHO05D006724 4.1e-53 211.8 178 56.7
Lj2g0014184 Lotus japonicus HOM05D005418 ORTHO05D006724 5.4e-53 211.5 178 56.7
THA.LOC104812146 Tarenaya hassleriana HOM05D005418 ORTHO05D006724 5.4e-53 211.5 178 55.1
CiPaw.15G148000 Carya illinoinensis HOM05D005418 ORTHO05D006724 7.0e-53 211.1 178 56.7
C06p33820 Brassica napus HOM05D005418 ORTHO05D006724 9.2e-53 210.7 178 55.1
COL.COLO4_07665 Corchorus olitorius HOM05D005418 ORTHO05D006724 9.2e-53 210.7 178 55.6
FAN13G2408 Fragaria x ananassa HOM05D005418 ORTHO05D006724 9.2e-53 210.7 178 55.6
Manes.14G173200 Manihot esculenta HOM05D005418 ORTHO05D006724 9.2e-53 210.7 178 56.7
QL10p031782 Quercus lobata HOM05D005418 ORTHO05D006724 1.2e-52 210.3 177 55.4
COL.COLO4_34153 Corchorus olitorius HOM05D005418 ORTHO05D006724 1.6e-52 209.9 178 55.1
Pp3c23_19050 Physcomitrium patens HOM05D005418 ORTHO05D006724 1.6e-52 209.9 178 57.9
PGR102G0744 Punica granatum HOM05D005418 ORTHO05D006724 1.6e-52 209.9 179 55.9
Ca_25975_v3 Cicer arietinum L. HOM05D005418 ORTHO05D006724 2.7e-52 209.1 178 56.2
Hund01906 Selenicereus undatus HOM05D005418 ORTHO05D006724 2.7e-52 209.1 184 54.3
Peaxi162Scf00171g00918 Petunia axillaris HOM05D005418 ORTHO05D006724 3.5e-52 208.8 178 55.6
arahy.Tifrunner.gnm1.ann1.XQM4JL Arachis hypogaea HOM05D005418 ORTHO05D006724 5.9e-52 208.0 178 57.9
RcHm_v2.0_Chr7g0177871 Rosa chinensis HOM05D005418 ORTHO05D006724 5.9e-52 208.0 178 55.6
TWI15G1138 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 5.9e-52 208.0 178 55.6
TWI60G0409 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 7.8e-52 207.6 178 55.1
SMO232G0125 Selaginella moellendorffii HOM05D005418 ORTHO05D006724 1.0e-51 207.2 179 56.4
unitig_899.g14817 Utricularia gibba HOM05D005418 ORTHO05D006724 1.0e-51 207.2 178 55.6
CDE12G0113 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 1.3e-51 206.8 178 55.1
TPR.G14843 Trifolium pratense HOM05D005418 ORTHO05D006724 1.3e-51 206.8 178 54.5
Nitab4.5_0000430g0100 Nicotiana tabacum HOM05D005418 ORTHO05D006724 1.7e-51 206.5 198 51.5
Nitab4.5_0006110g0060 Nicotiana tabacum HOM05D005418 ORTHO05D006724 1.7e-51 206.5 198 51.5
Lsat_1_v5_gn_2_11960 Lactuca sativa HOM05D005418 ORTHO05D006724 3.9e-51 205.3 170 56.5
Zm00001eb139180 Zea mays HOM05D005418 ORTHO05D006724 3.9e-51 205.3 179 55.3
CAN.G637.36 Capsicum annuum HOM05D005418 ORTHO05D006724 5.0e-51 204.9 178 55.1
Glyma.07G106200 Glycine max HOM05D005418 ORTHO05D006724 6.6e-51 204.5 178 55.1
Lalb_Chr22g0353611 Lupinus albus HOM05D005418 ORTHO05D006724 6.6e-51 204.5 178 55.6
ClCG04G012830 Citrullus lanatus HOM05D005418 ORTHO05D006724 1.9e-50 203.0 198 52.0
Psat1g028800 Pisum sativum HOM05D005418 ORTHO05D006724 1.9e-50 203.0 178 54.5
Actinidia06835 Actinidia chinensis HOM05D005418 ORTHO05D006724 4.3e-50 201.8 209 50.7
Os12g0168200 Oryza sativa ssp. japonica HOM05D005418 ORTHO05D006724 4.3e-50 201.8 179 54.2
AUR62036432 Chenopodium quinoa HOM05D005418 ORTHO05D006724 1.2e-49 200.3 194 51.0
Sabra15G0030200 Salix brachista HOM05D005418 ORTHO05D006724 2.8e-49 199.1 219 47.0
SHI12596 Sapria himalayana HOM05D005418 ORTHO05D006724 8.0e-49 197.6 178 53.4
Medtr0332s0040 Medicago truncatula HOM05D005418 ORTHO05D006724 1.1e-48 197.2 174 53.4
Aa31LG4G11570 Aethionema arabicum HOM05D005418 ORTHO05D006724 1.8e-48 196.4 159 57.9
Lj9C416T2 Lonicera japonica HOM05D005418 ORTHO05D006724 8.9e-48 194.1 178 53.4
Thhalv10019803m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 1.5e-47 193.4 178 53.4
CBR_g52356 Chara braunii HOM05D005418 ORTHO05D006724 2.0e-47 193.0 156 60.9
DCAR_011383 Daucus carota HOM05D000073 ORTHO05D000033 4.4e-47 191.8 146 61.6
PRCOL_00006990 Prasinoderma coloniale HOM05D005418 ORTHO05D006724 4.4e-47 191.8 176 50.0
HPP92_026203 Vanilla planifolia HOM05D005418 ORTHO05D006724 4.9e-46 188.3 143 62.2
MD06G1233000 Malus domestica HOM05D005418 ORTHO05D006724 8.3e-46 187.6 194 47.9
PSO832G3604 Papaver somniferum HOM05D005418 ORTHO05D006724 8.3e-46 187.6 178 53.4
FvH4_5g17750 Fragaria vesca HOM05D005418 ORTHO05D006724 9.2e-45 184.1 143 61.5
Sabra15G0031100 Salix brachista HOM05D005418 ORTHO05D006724 1.6e-41 173.3 281 36.3
Rhsim08G0113500 Rhododendron simsii HOM05D005418 ORTHO05D006724 6.2e-41 171.4 264 38.6
MCO08G311 Micromonas commoda HOM05D005418 ORTHO05D006724 2.4e-37 159.5 158 51.3
Hma1.2p1_0471F.1_g159370 Hydrangea macrophylla HOM05D005418 ORTHO05D006724 7.1e-37 157.9 267 36.3
MBI17_g45323_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 5.6e-34 148.3 123 63.4
HPP92_016144 Vanilla planifolia HOM05D005418 ORTHO05D006724 9.5e-34 147.5 134 52.2
Pp3c24_6390 Physcomitrium patens HOM05D005418 ORTHO05D006724 2.8e-33 146.0 105 65.7
CDE11G0106 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 8.9e-32 141.0 104 64.4
Haze_15514 Corylus avellana HOM05D005418 ORTHO05D006724 5.8e-31 138.3 104 62.5
EL10Ac4g07599 Beta vulgaris HOM05D005418 ORTHO05D006724 7.1e-29 131.3 123 48.8
AagrBONN_evm.TU.Sc2ySwM_344.1040 Anthoceros agrestis HOM05D005418 ORTHO05D006724 9.2e-29 131.0 122 53.3
AUR62017076 Chenopodium quinoa HOM05D005418 ORTHO05D006724 1.3e-27 127.1 123 48.8
PGSC0003DMG400019995 Solanum tuberosum HOM05D005418 ORTHO05D006724 7.3e-26 121.3 99 59.6
Thhalv10019340m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 2.8e-25 119.4 114 50.0
Cfa023691 Carpinus fangiana HOM05D005418 ORTHO05D006724 8.1e-25 117.9 171 38.6
Dinv09076 Davidia involucrata HOM05D005418 ORTHO05D006724 1.8e-24 116.7 114 51.8
CDE01G0467 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 1.7e-22 110.2 77 63.6
Sc12g0008750 Simmondsia chinensis HOM05D005418 ORTHO05D006724 1.7e-22 110.2 112 47.3
Oeu036611.1 Olea europaea HOM05D005418 ORTHO05D006724 6.0e-20 101.7 87 56.3
Dinv09075 Davidia involucrata HOM05D005418 ORTHO05D006724 3.6e-17 92.4 57 70.2
Ah.06g181320 Amaranthus hybridus HOM05D005418 ORTHO05D006724 1.8e-16 90.1 57 68.4
EL10Ac4g07600 Beta vulgaris HOM05D005418 ORTHO05D006724 2.4e-16 89.7 60 66.7
A07p39670 Brassica napus HOM05D005418 ORTHO05D006724 5.3e-16 88.6 72 56.9
BraA07t31516Z Brassica rapa HOM05D005418 ORTHO05D006724 5.3e-16 88.6 72 56.9
BcaC08g46801 Brassica carinata HOM05D005418 ORTHO05D006724 1.2e-15 87.4 57 64.9
C06p47960 Brassica napus HOM05D005418 ORTHO05D006724 1.2e-15 87.4 57 64.9
BolC6t39831H Brassica oleracea HOM05D005418 ORTHO05D006724 1.2e-15 87.4 57 64.9
Sc12g0008760 Simmondsia chinensis HOM05D005418 ORTHO05D006724 7.6e-15 84.7 55 65.5
Eucgr.J01305 Eucalyptus grandis HOM05D005418 ORTHO05D006724 9.6e-10 67.8 74 41.9
COL.COLO4_34165 Corchorus olitorius HOM05D005418 ORTHO05D006724 2.4e-08 63.2 54 55.6
COL.COLO4_32865 Corchorus olitorius HOM05D005418 ORTHO05D006724 5.3e-08 62.0 43 67.4
COL.COLO4_07708 Corchorus olitorius HOM05D005418 ORTHO05D006724 4.5e-07 58.9 80 41.2


User provided reference genes

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