Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 2.1e-225 785.4 411 100.0
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 3.1e-59 233.4 404 35.1
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 1.5e-58 231.1 400 35.2
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 3.4e-58 229.9 400 34.5
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 1.3e-57 228.0 400 33.5
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 3.8e-57 226.5 405 35.1
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 4.9e-57 226.1 403 34.2
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 6.4e-57 225.7 400 33.5
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 1.1e-56 224.9 406 34.5
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 1.1e-56 224.9 405 33.6
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 1.1e-56 224.9 406 33.3
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 1.1e-56 224.9 406 35.2
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 1.4e-56 224.6 403 34.2
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 1.4e-56 224.6 403 34.0
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 1.9e-56 224.2 403 34.2
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 1.9e-56 224.2 403 34.0
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 1.9e-56 224.2 403 34.2
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 1.9e-56 224.2 406 36.0
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 2.4e-56 223.8 400 33.2
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 2.4e-56 223.8 400 34.2
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 2.4e-56 223.8 400 34.2
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 2.4e-56 223.8 400 34.2
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 2.4e-56 223.8 402 34.6
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 2.4e-56 223.8 406 34.2
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 2.4e-56 223.8 400 34.2
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 2.4e-56 223.8 400 33.2
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 3.2e-56 223.4 403 34.0
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 3.2e-56 223.4 319 39.2
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 4.2e-56 223.0 400 34.0
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 4.2e-56 223.0 406 33.7
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 4.2e-56 223.0 400 34.2
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 4.2e-56 223.0 400 34.0
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 4.2e-56 223.0 400 33.8
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 4.2e-56 223.0 405 32.6
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 5.5e-56 222.6 406 35.0
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 7.1e-56 222.2 399 33.6
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 7.1e-56 222.2 407 34.6
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 7.1e-56 222.2 405 34.8
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 1.2e-55 221.5 403 33.5
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 1.2e-55 221.5 403 34.7
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 1.2e-55 221.5 400 32.8
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 1.6e-55 221.1 408 35.0
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 2.1e-55 220.7 400 33.2
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 2.1e-55 220.7 400 33.5
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 2.1e-55 220.7 406 34.2
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 2.1e-55 220.7 409 34.0
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.7e-55 220.3 403 33.5
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 3.5e-55 219.9 400 33.2
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 3.5e-55 219.9 400 33.5
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 3.5e-55 219.9 408 35.8
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 4.6e-55 219.5 399 35.3
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 4.6e-55 219.5 406 34.7
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 4.6e-55 219.5 400 33.2
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 4.6e-55 219.5 406 33.7
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 6.0e-55 219.2 403 33.3
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 6.0e-55 219.2 412 33.0
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 6.0e-55 219.2 402 33.3
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 6.0e-55 219.2 400 33.5
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 7.9e-55 218.8 400 32.8
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 7.9e-55 218.8 412 33.0
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 7.9e-55 218.8 412 33.0
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 7.9e-55 218.8 400 33.2
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 7.9e-55 218.8 305 40.7
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 7.9e-55 218.8 413 34.6
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 1.3e-54 218.0 404 34.4
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 1.3e-54 218.0 403 33.0
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 1.3e-54 218.0 403 33.5
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.3e-54 218.0 400 33.0
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 1.3e-54 218.0 400 32.5
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.8e-54 217.6 400 33.0
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 2.3e-54 217.2 405 33.8
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 3.0e-54 216.9 399 33.3
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 3.9e-54 216.5 403 33.0
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 5.1e-54 216.1 406 33.0
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 6.7e-54 215.7 400 33.0
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 6.7e-54 215.7 340 36.2
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 8.7e-54 215.3 405 32.1
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 1.1e-53 214.9 404 33.2
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 1.5e-53 214.5 408 33.3
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 1.5e-53 214.5 404 32.7
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 1.5e-53 214.5 399 33.3
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 1.5e-53 214.5 410 32.9
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 2.5e-53 213.8 404 33.4
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 4.3e-53 213.0 298 39.9
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 1.3e-52 211.5 408 34.1
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 1.6e-52 211.1 400 32.2
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 1.1e-51 208.4 408 32.1
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 1.4e-51 208.0 240 43.8
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 1.4e-51 208.0 410 32.7
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 1.8e-51 207.6 410 32.9
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 6.9e-51 205.7 427 31.9
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 6.9e-51 205.7 277 39.7
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 6.9e-51 205.7 240 42.9
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 9.0e-51 205.3 277 39.7
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 3.4e-50 203.4 239 43.5
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 3.4e-50 203.4 401 31.9
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 3.8e-49 199.9 409 33.7
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 4.9e-49 199.5 334 33.8
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 4.9e-49 199.5 422 30.3
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 1.1e-48 198.4 431 29.7
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 3.2e-48 196.8 404 31.4
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 1.0e-46 191.8 410 32.4
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 3.9e-46 189.9 334 32.6
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 4.8e-44 183.0 400 29.8
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 1.1e-43 181.8 397 29.7
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 2.4e-43 180.6 300 35.3
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 2.0e-42 177.6 247 38.9
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 3.4e-42 176.8 366 31.7
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 3.4e-42 176.8 366 31.7
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 1.4e-40 171.4 404 30.7
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 3.2e-40 170.2 191 45.0
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 7.2e-40 169.1 474 28.7
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 1.9e-37 161.0 406 28.6
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.9e-33 147.1 191 41.4
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 8.5e-33 145.6 400 29.5
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 1.9e-32 144.4 175 42.9
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.2e-32 142.5 233 36.5
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 2.7e-31 140.6 404 27.0
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 5.1e-30 136.3 284 33.1
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 2.2e-28 131.0 289 29.4
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.9e-25 120.6 126 49.2
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 3.8e-25 120.2 231 32.0
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 1.1e-24 118.6 281 29.5
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 3.2e-24 117.1 314 27.4
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.8e-20 104.0 191 33.5
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 3.7e-20 103.6 124 42.7
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 4.1e-19 100.1 323 24.1
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 5.3e-11 73.2 149 32.2
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 4.2e-08 63.5 86 40.7
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 1.2e-07 62.0 115 37.4
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 4.0e-06 57.0 73 38.4


User provided reference genes

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