Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre02.g095400 Chlamydomonas reinhardtii HOM05D003434 ORTHO05D004465 6.2e-160 567.8 367 100.0
Os02g0591800 Oryza sativa ssp. japonica HOM05D003434 ORTHO05D004465 2.8e-88 329.7 277 58.5
GSVIVG01028448001 Vitis vinifera HOM05D003434 ORTHO05D004465 9.1e-87 324.7 275 56.4
Zm00001eb245760 Zea mays HOM05D003434 ORTHO05D004465 5.0e-85 318.9 276 55.8
AUR62015117 Chenopodium quinoa HOM05D003434 ORTHO05D004465 6.5e-85 318.5 275 56.0
AUR62017579 Chenopodium quinoa HOM05D003434 ORTHO05D004465 8.5e-85 318.2 275 56.0
MBI01_g15748_MAGBIO Magnolia biondii HOM05D003434 ORTHO05D004465 1.1e-84 317.8 276 54.7
Mapoly0044s0007 Marchantia polymorpha HOM05D003434 ORTHO05D004465 1.5e-84 317.4 280 54.6
Aqoxy4G01062 Aquilegia oxysepala HOM05D003434 ORTHO05D004465 4.2e-84 315.8 274 56.2
TWI38G2119 Tripterygium wilfordii HOM05D003434 ORTHO05D004465 7.2e-84 315.1 275 54.9
ATR0605G144 Amborella trichopoda HOM05D003434 ORTHO05D004465 1.2e-83 314.3 275 55.6
FvH4_3g20570 Fragaria vesca HOM05D003434 ORTHO05D004465 1.2e-83 314.3 275 54.5
RcHm_v2.0_Chr5g0034581 Rosa chinensis HOM05D003434 ORTHO05D004465 1.6e-83 313.9 275 54.5
Lalb_Chr17g0340551 Lupinus albus HOM05D003434 ORTHO05D004465 2.7e-83 313.2 274 55.8
PSO832G4191 Papaver somniferum HOM05D003434 ORTHO05D004465 2.7e-83 313.2 276 56.2
PSO017G4384 Papaver somniferum HOM05D003434 ORTHO05D004465 3.6e-83 312.8 276 56.5
TAR626G1243 Trochodendron aralioides HOM05D003434 ORTHO05D004465 3.6e-83 312.8 274 54.0
FAN21G0310 Fragaria x ananassa HOM05D003434 ORTHO05D004465 4.7e-83 312.4 275 53.8
Hund24214 Selenicereus undatus HOM05D003434 ORTHO05D004465 4.7e-83 312.4 275 54.5
FAN25G0934 Fragaria x ananassa HOM05D003434 ORTHO05D004465 6.1e-83 312.0 275 54.2
PSO170G0766 Papaver somniferum HOM05D003434 ORTHO05D004465 6.1e-83 312.0 276 56.2
PSO210G2253 Papaver somniferum HOM05D003434 ORTHO05D004465 6.1e-83 312.0 276 55.8
arahy.Tifrunner.gnm1.ann1.L3HXPU Arachis hypogaea HOM05D003434 ORTHO05D004465 8.0e-83 311.6 275 55.3
Ca_13044_v3 Cicer arietinum L. HOM05D003434 ORTHO05D004465 8.0e-83 311.6 275 54.9
SMO353G0304 Selaginella moellendorffii HOM05D003434 ORTHO05D004465 8.0e-83 311.6 264 58.0
Sc21g0001090 Simmondsia chinensis HOM05D003434 ORTHO05D004465 8.0e-83 311.6 275 54.5
CAN.G1237.13 Capsicum annuum HOM05D003434 ORTHO05D004465 1.0e-82 311.2 275 54.5
Dinv08315 Davidia involucrata HOM05D003434 ORTHO05D002822 1.0e-82 311.2 275 55.6
Lalb_Chr04g0258261 Lupinus albus HOM05D003434 ORTHO05D004465 1.4e-82 310.8 274 55.5
AagrBONN_evm.TU.Sc2ySwM_344.2838 Anthoceros agrestis HOM05D003434 ORTHO05D004465 1.8e-82 310.5 274 55.1
arahy.Tifrunner.gnm1.ann1.LC97RS Arachis hypogaea HOM05D003434 ORTHO05D004465 1.8e-82 310.5 275 55.3
TPR.G27919 Trifolium pratense HOM05D003434 ORTHO05D004465 1.8e-82 310.5 274 54.4
CiPaw.11G173200 Carya illinoinensis HOM05D003434 ORTHO05D004465 2.3e-82 310.1 274 54.0
CDE07G1591 Ceratophyllum demersum HOM05D003434 ORTHO05D004465 2.3e-82 310.1 275 55.3
FAN16G2559 Fragaria x ananassa HOM05D003434 ORTHO05D004465 2.3e-82 310.1 275 53.8
MD11G1241800 Malus domestica HOM05D003434 ORTHO05D004465 2.3e-82 310.1 276 53.6
CSS0016315 Camellia sinensis var. sinensis HOM05D003434 ORTHO05D004465 3.0e-82 309.7 278 54.3
Psat6g028560 Pisum sativum HOM05D003434 ORTHO05D004465 3.0e-82 309.7 275 53.8
THA.LOC104815549 Tarenaya hassleriana HOM05D003434 ORTHO05D004465 3.0e-82 309.7 277 54.5
Lj1g0009928 Lotus japonicus HOM05D003434 ORTHO05D004465 4.0e-82 309.3 275 54.9
Manes.12G076100 Manihot esculenta HOM05D003434 ORTHO05D004465 4.0e-82 309.3 264 56.4
PGSC0003DMG400012714 Solanum tuberosum HOM05D003434 ORTHO05D004465 4.0e-82 309.3 275 54.2
Ciclev10008977m.g Citrus clementina HOM05D003434 ORTHO05D004465 5.2e-82 308.9 276 54.0
Solyc04g016380.3 Solanum lycopersicum HOM05D003434 ORTHO05D004465 5.2e-82 308.9 275 54.2
Medtr7g069430 Medicago truncatula HOM05D003434 ORTHO05D004465 6.7e-82 308.5 275 54.5
Sabra11G0108200 Salix brachista HOM05D003434 ORTHO05D002822 6.7e-82 308.5 276 54.3
Phvul.011G077301 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 8.8e-82 308.1 275 54.5
Duzib213G0358 Durio zibethinus HOM05D003434 ORTHO05D004465 1.2e-81 307.8 265 55.8
Gohir.D11G296500 Gossypium hirsutum HOM05D003434 ORTHO05D004465 1.2e-81 307.8 265 55.5
CANSAT78G2387 Cannabis sativa HOM05D003434 ORTHO05D004465 1.5e-81 307.4 274 52.9
CARHR090510 Cardamine hirsuta HOM05D003434 ORTHO05D004465 1.5e-81 307.4 276 54.0
Sp1g39500 Schrenkiella parvula HOM05D003434 ORTHO05D004465 1.5e-81 307.4 278 53.2
Thecc.07G077100 Theobroma cacao HOM05D003434 ORTHO05D004465 1.5e-81 307.4 265 55.8
Lj1A848T59 Lonicera japonica HOM05D003434 ORTHO05D004465 2.0e-81 307.0 265 56.2
Medtr1g012990 Medicago truncatula HOM05D003434 ORTHO05D004465 2.0e-81 307.0 275 53.8
Pp3c16_10600 Physcomitrium patens HOM05D003434 ORTHO05D004465 2.0e-81 307.0 278 54.7
Sp3g13710 Schrenkiella parvula HOM05D003434 ORTHO05D004465 2.0e-81 307.0 277 53.4
THA.LOC104818062 Tarenaya hassleriana HOM05D003434 ORTHO05D004465 2.0e-81 307.0 275 54.5
Gohir.A11G282773 Gossypium hirsutum HOM05D003434 ORTHO05D004465 2.6e-81 306.6 265 55.1
SalBow4G3038 Salvia bowleyana HOM05D003434 ORTHO05D004465 2.6e-81 306.6 275 53.5
Lsat_1_v5_gn_9_57521 Lactuca sativa HOM05D003434 ORTHO05D004465 3.3e-81 306.2 275 53.5
MCO15G262 Micromonas commoda HOM05D003434 ORTHO05D004465 3.3e-81 306.2 262 56.5
BcaB06g29579 Brassica carinata HOM05D003434 ORTHO05D004465 4.4e-81 305.8 277 53.1
A01p38760 Brassica napus HOM05D003434 ORTHO05D004465 4.4e-81 305.8 277 53.4
CARHR043150 Cardamine hirsuta HOM05D003434 ORTHO05D004465 4.4e-81 305.8 278 53.6
Glyma.02G114000 Glycine max HOM05D003434 ORTHO05D004465 4.4e-81 305.8 275 53.8
Glyma.18G278000 Glycine max HOM05D003434 ORTHO05D004465 4.4e-81 305.8 275 53.5
HanXRQChr10g0306991 Helianthus annuus HOM05D003434 ORTHO05D004465 4.4e-81 305.8 274 53.6
HanXRQChr12g0374331 Helianthus annuus HOM05D003434 ORTHO05D004465 4.4e-81 305.8 274 53.6
Lsat_1_v5_gn_7_105060 Lactuca sativa HOM05D003434 ORTHO05D004465 4.4e-81 305.8 274 53.6
Nitab4.5_0001618g0180 Nicotiana tabacum HOM05D003434 ORTHO05D004465 4.4e-81 305.8 274 54.0
Nitab4.5_0000826g0070 Nicotiana tabacum HOM05D003434 ORTHO05D004465 5.7e-81 305.4 274 53.6
Peaxi162Scf00130g00826 Petunia axillaris HOM05D003434 ORTHO05D004465 5.7e-81 305.4 274 53.3
C01p49000 Brassica napus HOM05D003434 ORTHO05D004465 7.5e-81 305.1 277 53.4
CiPaw.12G120800 Carya illinoinensis HOM05D003434 ORTHO05D004465 7.5e-81 305.1 274 52.9
ECA236G4345 Erigeron canadensis HOM05D003434 ORTHO05D004465 7.5e-81 305.1 274 53.6
Phvul.008G022950 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 7.5e-81 305.1 275 53.8
VMungo1383G3569 Vigna mungo HOM05D003434 ORTHO05D004465 7.5e-81 305.1 275 53.5
Aa31LG8G2690 Aethionema arabicum HOM05D003434 ORTHO05D004465 9.7e-81 304.7 277 53.4
Thhalv10021159m.g Eutrema salsugineum HOM05D003434 ORTHO05D004465 9.7e-81 304.7 276 53.6
Potri.011G122200 Populus trichocarpa HOM05D003434 ORTHO05D004465 9.7e-81 304.7 276 53.3
Prupe.4G185500 Prunus persica HOM05D003434 ORTHO05D004465 9.7e-81 304.7 274 53.3
A03p39310 Brassica napus HOM05D003434 ORTHO05D004465 1.3e-80 304.3 277 52.7
BraA03t13081Z Brassica rapa HOM05D003434 ORTHO05D004465 1.3e-80 304.3 277 52.7
Hma1.2p1_1789F.1_g302480 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 1.3e-80 304.3 274 53.6
Oeu011677.2 Olea europaea HOM05D003434 ORTHO05D004465 1.3e-80 304.3 284 52.8
A05p33960 Brassica napus HOM05D003434 ORTHO05D004465 1.7e-80 303.9 277 52.7
C05p51700 Brassica napus HOM05D003434 ORTHO05D004465 1.7e-80 303.9 277 52.7
BraA05t22218Z Brassica rapa HOM05D003434 ORTHO05D004465 1.7e-80 303.9 277 52.7
Carub.0001s4208 Capsella rubella HOM05D003434 ORTHO05D004465 1.7e-80 303.9 278 53.2
BcaB04g20924 Brassica carinata HOM05D003434 ORTHO05D004465 2.2e-80 303.5 276 52.9
BcaC01g03873 Brassica carinata HOM05D003434 ORTHO05D004465 2.2e-80 303.5 277 52.7
C03p47690 Brassica napus HOM05D003434 ORTHO05D004465 2.2e-80 303.5 277 52.7
BolC3t17044H Brassica oleracea HOM05D003434 ORTHO05D004465 2.2e-80 303.5 277 52.7
Ca_05552_v3 Cicer arietinum L. HOM05D003434 ORTHO05D004465 2.2e-80 303.5 275 53.1
Haze_07077 Corylus avellana HOM05D003434 ORTHO05D004465 2.2e-80 303.5 275 54.5
Glyma.08G255000 Glycine max HOM05D003434 ORTHO05D004465 2.2e-80 303.5 275 52.7
Rhsim06G0196400 Rhododendron simsii HOM05D003434 ORTHO05D004465 2.2e-80 303.5 276 53.6
Sed0012815 Sechium edule HOM05D003434 ORTHO05D004465 2.2e-80 303.5 275 52.7
SGA_v2.0_scaffold9G04937 Striga asiatica HOM05D003434 ORTHO05D004465 2.2e-80 303.5 290 51.7
unitig_0.g2416 Utricularia gibba HOM05D003434 ORTHO05D004465 2.2e-80 303.5 264 55.3
Aa31LG10G2140 Aethionema arabicum HOM05D003434 ORTHO05D004465 2.8e-80 303.1 277 53.1
AL3G28010 Arabidopsis lyrata HOM05D003434 ORTHO05D004465 2.8e-80 303.1 277 53.1
AT1G52930 Arabidopsis thaliana HOM05D003434 ORTHO05D004465 2.8e-80 303.1 277 53.1
EL10Ac9g22818 Beta vulgaris HOM05D003434 ORTHO05D004465 2.8e-80 303.1 296 50.0
BcaB06g29576 Brassica carinata HOM05D003434 ORTHO05D004465 2.8e-80 303.1 277 52.3
Carub.0003s1518 Capsella rubella HOM05D003434 ORTHO05D004465 2.8e-80 303.1 276 53.3
Haze_09473 Corylus avellana HOM05D003434 ORTHO05D004465 2.8e-80 303.1 275 54.5
Haze_09477 Corylus avellana HOM05D003434 ORTHO05D004465 2.8e-80 303.1 275 54.5
MELO3C015338.2 Cucumis melo HOM05D003434 ORTHO05D004465 2.8e-80 303.1 275 52.7
Hma1.2p1_2288F.1_g318950 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 2.8e-80 303.1 274 53.6
Sed0008309 Sechium edule HOM05D003434 ORTHO05D004465 2.8e-80 303.1 274 52.6
vmacro19412 Vaccinium macrocarpon HOM05D003434 ORTHO05D004465 2.8e-80 303.1 277 53.4
DCAR_019543 Daucus carota HOM05D003434 ORTHO05D004465 3.7e-80 302.8 274 54.4
MD03G1224000 Malus domestica HOM05D003434 ORTHO05D004465 3.7e-80 302.8 275 52.7
AT3G15460 Arabidopsis thaliana HOM05D003434 ORTHO05D004465 4.8e-80 302.4 277 52.7
Cpa.g.sc80.31 Carica papaya HOM05D003434 ORTHO05D004465 4.8e-80 302.4 264 55.3
Thhalv10011666m.g Eutrema salsugineum HOM05D003434 ORTHO05D004465 4.8e-80 302.4 276 53.3
Cfa020548 Carpinus fangiana HOM05D003434 ORTHO05D004465 6.3e-80 302.0 275 54.2
Cc05_g12350 Coffea canephora HOM05D003434 ORTHO05D004465 6.3e-80 302.0 264 54.9
Eucgr.F01099 Eucalyptus grandis HOM05D003434 ORTHO05D004465 6.3e-80 302.0 274 53.6
vmacro11838 Vaccinium macrocarpon HOM05D003434 ORTHO05D004465 8.2e-80 301.6 277 53.1
Oeu019344.1 Olea europaea HOM05D003434 ORTHO05D004465 1.1e-79 301.2 278 51.8
COL.COLO4_09433 Corchorus olitorius HOM05D003434 ORTHO05D004465 1.4e-79 300.8 265 54.3
Potri.001G403100 Populus trichocarpa HOM05D003434 ORTHO05D004465 1.4e-79 300.8 276 53.3
BolC1t04864H Brassica oleracea HOM05D003434 ORTHO05D004465 4.1e-79 299.3 273 54.2
Lj8A158G80 Lonicera japonica HOM05D003434 ORTHO05D004465 4.1e-79 299.3 265 54.3
Gorai.007G319600 Gossypium raimondii HOM05D003434 ORTHO05D004465 5.3e-79 298.9 277 53.1
AL1G61260 Arabidopsis lyrata HOM05D003434 ORTHO05D004465 7.0e-79 298.5 277 52.3
BolC5t33857H Brassica oleracea HOM05D003434 ORTHO05D004465 7.0e-79 298.5 278 52.2
Peaxi162Scf00069g00118 Petunia axillaris HOM05D003434 ORTHO05D004465 7.0e-79 298.5 276 51.8
Actinidia09989 Actinidia chinensis HOM05D003434 ORTHO05D004465 9.1e-79 298.1 274 53.3
Duzib170G0474 Durio zibethinus HOM05D003434 ORTHO05D004465 1.2e-78 297.7 264 54.9
Sopen04g008470 Solanum pennellii HOM05D003434 ORTHO05D004465 1.6e-78 297.4 296 50.3
Nn1g07032 Nelumbo nucifera HOM05D003434 ORTHO05D004465 5.0e-77 292.4 241 56.4
Hma1.2p1_3282F.1_g334840 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 8.5e-77 291.6 301 49.2
PGR083G2248 Punica granatum HOM05D003434 ORTHO05D004465 8.5e-77 291.6 274 50.7
FAN11G3195 Fragaria x ananassa HOM05D003434 ORTHO05D004465 1.5e-76 290.8 235 57.9
Nitab4.5_0000677g0140 Nicotiana tabacum HOM05D003434 ORTHO05D004465 1.9e-76 290.4 309 47.6
Psat6g129960 Pisum sativum HOM05D003434 ORTHO05D004465 2.5e-76 290.0 241 56.8
ClCG03G016840 Citrullus lanatus HOM05D003434 ORTHO05D004465 2.7e-75 286.6 306 47.1
DCAR_020982 Daucus carota HOM05D003434 ORTHO05D004465 4.7e-75 285.8 264 52.7
ClCG01G010880 Citrullus lanatus HOM05D003434 ORTHO05D004465 3.0e-74 283.1 257 52.5
QL08p019759 Quercus lobata HOM05D003434 ORTHO05D004465 5.2e-74 282.3 316 45.3
Psat3g183280 Pisum sativum HOM05D003434 ORTHO05D004465 9.8e-73 278.1 250 53.6
BraA01t03909Z Brassica rapa HOM05D003434 ORTHO05D004465 4.8e-72 275.8 255 52.9
Ah.01g001850 Amaranthus hybridus HOM05D003434 ORTHO05D004465 1.1e-71 274.6 275 50.9
Phvul.001G137900 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 1.8e-71 273.9 252 53.6
PRCOL_00005895 Prasinoderma coloniale HOM05D003434 ORTHO05D004465 9.1e-71 271.6 259 52.9
Cfa025477 Carpinus fangiana HOM05D003434 ORTHO05D004465 5.9e-70 268.9 272 48.5
Hma1.2p1_0400F.1_g144660 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 1.1e-68 264.6 301 46.5
SalBow6G7052 Salvia bowleyana HOM05D003434 ORTHO05D004465 4.0e-66 256.1 276 47.1
BcaC09g48510 Brassica carinata HOM05D003434 ORTHO05D004465 1.5e-65 254.2 263 48.7
CBR_g29800 Chara braunii HOM05D003434 ORTHO05D004465 5.7e-65 252.3 277 45.5
Migut.H01924 Erythranthe guttata HOM05D003434 ORTHO05D004465 7.5e-65 251.9 270 48.9
SEGI_09483 Sequoiadendron giganteum HOM05D003434 ORTHO05D004465 1.2e-62 244.6 183 61.7
TAR624G0430 Trochodendron aralioides HOM05D003434 ORTHO05D004465 1.1e-60 238.0 270 45.9
Phvul.001G137800 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 2.1e-59 233.8 208 53.8
Phvul.001G138125 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 2.1e-59 233.8 208 53.8
Zm00001eb183430 Zea mays HOM05D003434 ORTHO05D004465 7.5e-57 225.3 251 47.8
CsaV3_1G039130 Cucumis sativus L. HOM05D003434 ORTHO05D004465 1.6e-54 217.6 190 53.2
Gohir.A04G028400 Gossypium hirsutum HOM05D003434 ORTHO05D004465 1.3e-53 214.5 238 45.0
Sabra16G0264800 Salix brachista HOM05D003434 ORTHO05D004465 4.0e-50 203.0 193 51.3
Haze_26676 Corylus avellana HOM05D003434 ORTHO05D004465 1.4e-47 194.5 214 43.9
CDE04G2432 Ceratophyllum demersum HOM05D003434 ORTHO05D004465 8.6e-45 185.3 272 44.9
Hma1.2p1_0687F.1_g203600 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 8.3e-40 168.7 310 33.5
Phvul.008G022900 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 4.1e-39 166.4 143 55.2
HPP92_020071 Vanilla planifolia HOM05D003434 ORTHO05D004465 8.6e-37 158.7 143 52.4
TPR.G38897 Trifolium pratense HOM05D003434 ORTHO05D004465 5.6e-36 156.0 127 57.5
TPR.G685 Trifolium pratense HOM05D003434 ORTHO05D004465 1.8e-34 151.0 128 57.0
HPP92_020079 Vanilla planifolia HOM05D003434 ORTHO05D004465 3.1e-34 150.2 137 48.9
Phvul.008G023000 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 3.8e-32 143.3 131 52.7
CDE04G2177 Ceratophyllum demersum HOM05D003434 ORTHO05D004465 3.2e-31 140.2 115 59.1
DCAR_019542 Daucus carota HOM05D003434 ORTHO05D004465 7.1e-23 112.5 98 58.2
CsaV3_2G014790 Cucumis sativus L. HOM05D003434 ORTHO05D004465 2.8e-19 100.5 99 52.5
CsaV3_7G022570 Cucumis sativus L. HOM05D003434 ORTHO05D004465 3.6e-19 100.1 99 52.5
Hma1.2p1_1415F.1_g281950 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 1.4e-18 98.2 86 54.7
CsaV3_5G020630 Cucumis sativus L. HOM05D003434 ORTHO05D004465 1.8e-18 97.8 74 54.1
SEGI_35123 Sequoiadendron giganteum HOM05D003434 ORTHO05D004465 2.7e-14 84.0 65 52.3
Hma1.2p1_3286F.1_g334890 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 2.3e-13 80.9 125 37.6
Hund31009 Selenicereus undatus HOM05D003434 ORTHO05D023136 6.7e-13 79.3 65 53.8
Hund24220 Selenicereus undatus HOM05D003434 ORTHO05D004465 1.6e-11 74.7 65 50.8
Hund24225 Selenicereus undatus HOM05D003434 ORTHO05D023136 1.6e-11 74.7 63 52.4
SalBow6G0562 Salvia bowleyana HOM05D003434 ORTHO05D359170 9.0e-10 68.9 45 66.7
SEGI_41466 Sequoiadendron giganteum HOM05D003434 ORTHO05D000001 7.6e-09 65.9 66 50.0
TPR.G10880 Trifolium pratense HOM05D003434 ORTHO05D004465 1.3e-08 65.1 58 55.2


User provided reference genes

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