Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc92.57 Carica papaya HOM05D004558 ORTHO05D005647 1.7e-235 818.9 409 100.0
Thecc.05G130200 Theobroma cacao HOM05D004558 ORTHO05D005647 4.8e-214 747.7 410 91.2
Cfa019915 Carpinus fangiana HOM05D004558 ORTHO05D005647 1.6e-212 742.7 410 89.8
Potri.016G025000 Populus trichocarpa HOM05D004558 ORTHO05D005647 7.7e-212 740.3 409 90.0
Haze_20335 Corylus avellana HOM05D004558 ORTHO05D005647 1.0e-211 740.0 408 89.2
QL07p015188 Quercus lobata HOM05D004558 ORTHO05D005647 1.7e-211 739.2 409 90.2
TWI53G2040 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 2.9e-211 738.4 411 89.8
Sabra16G0030900 Salix brachista HOM05D004558 ORTHO05D005647 3.8e-211 738.0 409 89.5
Potri.006G027300 Populus trichocarpa HOM05D004558 ORTHO05D005647 1.5e-210 736.1 409 89.5
Lj1g0019045 Lotus japonicus HOM05D004558 ORTHO05D005647 2.5e-210 735.3 406 89.9
arahy.Tifrunner.gnm1.ann1.VDKY5W Arachis hypogaea HOM05D004558 ORTHO05D005647 1.6e-209 732.6 411 90.0
Eucgr.A02177 Eucalyptus grandis HOM05D004558 ORTHO05D005647 2.8e-209 731.9 409 89.5
Ciclev10011842m.g Citrus clementina HOM05D004558 ORTHO05D005647 3.6e-209 731.5 417 87.8
Sabra06G0020200 Salix brachista HOM05D004558 ORTHO05D005647 3.6e-209 731.5 409 88.8
CiPaw.09G162600 Carya illinoinensis HOM05D004558 ORTHO05D005647 4.7e-209 731.1 406 89.4
Gohir.A01G192400 Gossypium hirsutum HOM05D004558 ORTHO05D005647 3.0e-208 728.4 410 89.5
Duzib128G1152 Durio zibethinus HOM05D004558 ORTHO05D005647 4.0e-208 728.0 410 89.0
Duzib093G1273 Durio zibethinus HOM05D004558 ORTHO05D005647 5.2e-208 727.6 410 89.8
Manes.09G073800 Manihot esculenta HOM05D004558 ORTHO05D005647 8.9e-208 726.9 409 89.7
TWI77G0093 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 8.9e-208 726.9 411 88.6
Phvul.001G108700 Phaseolus vulgaris HOM05D004558 ORTHO05D005647 1.2e-207 726.5 409 88.3
arahy.Tifrunner.gnm1.ann1.XE2WF0 Arachis hypogaea HOM05D004558 ORTHO05D005647 7.5e-207 723.8 413 88.9
ClCG04G004930 Citrullus lanatus HOM05D004558 ORTHO05D005647 4.9e-206 721.1 413 88.6
Aqoxy2G00035_Aqoxy2G00036 Aquilegia oxysepala HOM05D004558 ORTHO05D005647 1.4e-205 719.5 410 88.0
Nitab4.5_0000123g0170 Nicotiana tabacum HOM05D004558 ORTHO05D005647 1.8e-205 719.2 409 87.8
TAR369G0680 Trochodendron aralioides HOM05D004558 ORTHO05D005647 1.8e-205 719.2 410 90.0
Prupe.7G022500 Prunus persica HOM05D004558 ORTHO05D005647 2.4e-205 718.8 426 85.7
CsaV3_4G031720 Cucumis sativus L. HOM05D004558 ORTHO05D005647 5.4e-205 717.6 413 88.1
Sc19g0007850 Simmondsia chinensis HOM05D004558 ORTHO05D005647 5.4e-205 717.6 409 88.5
VMungo1383G3341 Vigna mungo HOM05D004558 ORTHO05D005647 9.2e-205 716.8 409 87.3
Lalb_Chr14g0365301 Lupinus albus HOM05D004558 ORTHO05D005647 2.7e-204 715.3 410 86.6
Hund24509 Selenicereus undatus HOM05D004558 ORTHO05D005647 4.5e-204 714.5 410 88.8
Nitab4.5_0001270g0120 Nicotiana tabacum HOM05D004558 ORTHO05D005647 1.0e-203 713.4 409 87.0
CANSAT78G1575 Cannabis sativa HOM05D004558 ORTHO05D005647 1.3e-203 713.0 410 87.3
THA.LOC104824384 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 1.7e-203 712.6 410 87.1
FAN19G1019 Fragaria x ananassa HOM05D004558 ORTHO05D005647 2.3e-203 712.2 411 86.6
Gohir.D01G177500 Gossypium hirsutum HOM05D004558 ORTHO05D005647 2.3e-203 712.2 410 87.8
PGR042G2423 Punica granatum HOM05D004558 ORTHO05D005647 2.9e-203 711.8 412 87.9
MBI13_g30268_MAGBIO Magnolia biondii HOM05D004558 ORTHO05D005647 1.1e-202 709.9 410 87.3
TPR.G23197 Trifolium pratense HOM05D004558 ORTHO05D005647 1.1e-202 709.9 410 86.1
FAN26G0634 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.9e-202 709.1 408 86.8
FvH4_1g28960 Fragaria vesca HOM05D004558 ORTHO05D005647 2.5e-202 708.8 408 86.8
FAN23G1063 Fragaria x ananassa HOM05D004558 ORTHO05D005647 2.5e-202 708.8 408 86.8
FAN28G2842 Fragaria x ananassa HOM05D004558 ORTHO05D005647 9.5e-202 706.8 408 86.5
SGA_v2.0_scaffold66G22316 Striga asiatica HOM05D004558 ORTHO05D005647 1.2e-201 706.4 412 86.9
BcaC07g40007 Brassica carinata HOM05D004558 ORTHO05D005647 2.1e-201 705.7 411 86.1
TAR546G0001 Trochodendron aralioides HOM05D004558 ORTHO05D005647 2.1e-201 705.7 410 87.3
A09p49810 Brassica napus HOM05D004558 ORTHO05D005647 4.7e-201 704.5 411 86.4
BraA09t40434Z Brassica rapa HOM05D004558 ORTHO05D005647 4.7e-201 704.5 411 86.4
AUR62020990 Chenopodium quinoa HOM05D004558 ORTHO05D005647 4.7e-201 704.5 410 86.1
Thhalv10006009m.g Eutrema salsugineum HOM05D004558 ORTHO05D005647 6.1e-201 704.1 411 86.4
Gorai.002G225700 Gossypium raimondii HOM05D004558 ORTHO05D005647 6.1e-201 704.1 419 85.9
Cc06_g22740 Coffea canephora HOM05D004558 ORTHO05D005647 1.0e-200 703.4 426 85.0
THA.LOC104803235 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 1.4e-200 703.0 410 85.9
GSVIVG01025841001 Vitis vinifera HOM05D004558 ORTHO05D005647 1.8e-200 702.6 374 93.0
AUR62018443 Chenopodium quinoa HOM05D004558 ORTHO05D005647 2.3e-200 702.2 410 85.9
BcaC08g44811 Brassica carinata HOM05D004558 ORTHO05D005647 4.0e-200 701.4 411 85.6
BraA07t29976Z Brassica rapa HOM05D004558 ORTHO05D005647 4.0e-200 701.4 411 85.9
BcaC07g40105 Brassica carinata HOM05D004558 ORTHO05D005647 5.2e-200 701.0 411 85.9
BolC6t37555H Brassica oleracea HOM05D004558 ORTHO05D005647 5.2e-200 701.0 411 85.6
Glyma.03G119500 Glycine max HOM05D004558 ORTHO05D005647 5.2e-200 701.0 408 87.7
BcaB02g07634 Brassica carinata HOM05D004558 ORTHO05D005647 8.9e-200 700.3 411 85.9
Sed0025713 Sechium edule HOM05D004558 ORTHO05D005647 8.9e-200 700.3 413 85.5
A07p23140 Brassica napus HOM05D004558 ORTHO05D005647 1.2e-199 699.9 411 85.6
Oeu060750.2 Olea europaea HOM05D004558 ORTHO05D005647 1.2e-199 699.9 420 85.5
Carub.0005s2368 Capsella rubella HOM05D004558 ORTHO05D005647 1.5e-199 699.5 411 85.6
Aa31LG10G11840 Aethionema arabicum HOM05D004558 ORTHO05D005647 2.0e-199 699.1 410 86.3
RcHm_v2.0_Chr3g0494361 Rosa chinensis HOM05D004558 ORTHO05D005647 2.0e-199 699.1 408 85.8
Migut.K00174 Erythranthe guttata HOM05D004558 ORTHO05D005647 2.6e-199 698.7 409 84.6
ATR1096G103 Amborella trichopoda HOM05D004558 ORTHO05D005647 5.8e-199 697.6 409 86.3
CARHR167090 Cardamine hirsuta HOM05D004558 ORTHO05D005647 5.8e-199 697.6 411 85.4
PSO384G3158 Papaver somniferum HOM05D004558 ORTHO05D005647 6.4e-198 694.1 410 85.1
PSO339G0825 Papaver somniferum HOM05D004558 ORTHO05D005647 2.4e-197 692.2 410 84.9
MSTRG.6287 Avicennia marina HOM05D004558 ORTHO05D005647 4.1e-197 691.4 409 84.8
PGSC0003DMG400007188 Solanum tuberosum HOM05D004558 ORTHO05D005647 9.2e-197 690.3 409 85.6
DCAR_013513 Daucus carota HOM05D004558 ORTHO05D005647 1.2e-196 689.9 409 84.6
Lalb_Chr24g0400681 Lupinus albus HOM05D004558 ORTHO05D005647 1.6e-196 689.5 410 82.7
CSS0026074 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 2.0e-196 689.1 411 85.6
CSS0045826 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 2.0e-196 689.1 411 85.6
CAN.G959.37 Capsicum annuum HOM05D004558 ORTHO05D005647 2.7e-196 688.7 409 84.8
Sopen10g028720 Solanum pennellii HOM05D004558 ORTHO05D005647 2.7e-196 688.7 409 85.3
C06p23840 Brassica napus HOM05D004558 ORTHO05D005647 4.6e-196 688.0 415 84.1
Solyc10g077040.2 Solanum lycopersicum HOM05D004558 ORTHO05D005647 7.8e-196 687.2 409 85.1
CDE02G2354 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.0e-195 686.8 411 84.2
Actinidia00883 Actinidia chinensis HOM05D004558 ORTHO05D005647 3.9e-195 684.9 417 83.2
Medtr7g088340 Medicago truncatula HOM05D004558 ORTHO05D005647 3.9e-195 684.9 410 85.1
Rhsim04G0119100 Rhododendron simsii HOM05D004558 ORTHO05D005647 5.0e-195 684.5 410 85.1
Peaxi162Scf00003g05355 Petunia axillaris HOM05D004558 ORTHO05D005647 8.6e-195 683.7 430 81.9
AL5G38370 Arabidopsis lyrata HOM05D004558 ORTHO05D005647 1.1e-194 683.3 407 84.5
Actinidia38207 Actinidia chinensis HOM05D004558 ORTHO05D005647 1.5e-194 682.9 411 83.9
vmacro08967 Vaccinium macrocarpon HOM05D004558 ORTHO05D005647 1.5e-194 682.9 406 84.7
unitig_46.g18485 Utricularia gibba HOM05D004558 ORTHO05D005647 5.6e-194 681.0 409 83.9
DCAR_016944 Daucus carota HOM05D004558 ORTHO05D005647 7.3e-194 680.6 411 83.7
Os01g0279100 Oryza sativa ssp. japonica HOM05D004558 ORTHO05D005647 2.1e-193 679.1 410 83.7
Oeu023011.1 Olea europaea HOM05D004558 ORTHO05D005647 6.2e-193 677.6 370 90.5
Rhsim04G0119000 Rhododendron simsii HOM05D004558 ORTHO05D005647 4.0e-192 674.9 424 82.3
Zm00001eb332650 Zea mays HOM05D004558 ORTHO05D005647 6.8e-192 674.1 372 89.0
Hma1.2p1_0251F.1_g102500 Hydrangea macrophylla HOM05D004558 ORTHO05D005647 1.5e-191 672.9 366 89.9
Sp5g05650 Schrenkiella parvula HOM05D004558 ORTHO05D005647 1.5e-191 672.9 378 88.4
ECA247G1747 Erigeron canadensis HOM05D004558 ORTHO05D005647 2.6e-191 672.2 412 82.3
HPP92_000696 Vanilla planifolia HOM05D004558 ORTHO05D005647 7.5e-191 670.6 411 82.7
Lj1A1078T64 Lonicera japonica HOM05D004558 ORTHO05D005647 1.3e-190 669.8 413 82.8
Lsat_1_v5_gn_9_30221 Lactuca sativa HOM05D004558 ORTHO05D005647 2.2e-190 669.1 416 81.5
Zm00001eb129000 Zea mays HOM05D004558 ORTHO05D005647 2.2e-190 669.1 375 88.0
SEGI_29193 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 8.3e-190 667.2 406 82.0
HanXRQChr10g0291961 Helianthus annuus HOM05D004558 ORTHO05D005647 3.2e-189 665.2 411 82.0
AT3G56940 Arabidopsis thaliana HOM05D004558 ORTHO05D005647 9.2e-181 637.1 333 92.8
unitig_37.g12773 Utricularia gibba HOM05D004558 ORTHO05D005647 1.3e-179 633.3 376 84.0
Mapoly0124s0017 Marchantia polymorpha HOM05D004558 ORTHO05D005647 4.7e-177 624.8 354 85.0
EL10Ac3g07349 Beta vulgaris HOM05D004558 ORTHO05D005647 2.4e-176 622.5 409 78.2
CDE04G3757 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 2.4e-176 622.5 409 77.8
SMO119G0375 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 2.0e-175 619.4 365 82.5
AagrBONN_evm.TU.Sc2ySwM_228.50 Anthoceros agrestis HOM05D004558 ORTHO05D005647 2.2e-174 615.9 361 82.3
Pp3c11_7910 Physcomitrium patens HOM05D004558 ORTHO05D005647 4.6e-172 608.2 366 79.5
Atru.chr1.1539 Acer truncatum HOM05D004558 ORTHO05D005647 2.9e-166 589.0 345 85.8
SGA_v2.0_scaffold69G23196 Striga asiatica HOM05D004558 ORTHO05D005647 6.4e-166 587.8 405 75.3
Ca_08344_v3 Cicer arietinum L. HOM05D004558 ORTHO05D005647 7.9e-156 554.3 340 83.2
Psat3g082520 Pisum sativum HOM05D004558 ORTHO05D005647 4.3e-154 548.5 324 85.5
Dinv11638 Davidia involucrata HOM05D004558 ORTHO05D005647 6.2e-153 544.7 322 85.4
PRCOL_00006479 Prasinoderma coloniale HOM05D004558 ORTHO05D005647 1.5e-151 540.0 357 73.7
Cre12.g510050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 1.1e-146 523.9 381 66.7
Ah.04g150190 Amaranthus hybridus HOM05D004558 ORTHO05D005647 7.4e-146 521.2 405 69.1
HPP92_000650 Vanilla planifolia HOM05D004558 ORTHO05D005647 1.4e-141 506.9 315 81.6
Pp3c7_26570 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.3e-139 500.4 285 84.9
MELO3C026802.2 Cucumis melo HOM05D004558 ORTHO05D005647 1.5e-138 496.9 293 87.0
MCO13G411 Micromonas commoda HOM05D004558 ORTHO05D005647 6.3e-137 491.5 345 69.9
SMO115G0161 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 1.8e-136 490.0 365 68.2
Glyma.19G123800 Glycine max HOM05D004558 ORTHO05D005647 2.4e-136 489.6 301 83.4
Cre07.g346050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 8.8e-131 471.1 374 62.3
SalBow6G0122 Salvia bowleyana HOM05D004558 ORTHO05D005647 3.3e-130 469.2 248 91.5
SalBow1G4785 Salvia bowleyana HOM05D004558 ORTHO05D005647 4.8e-121 438.7 285 78.6
CDE02G0342 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.2e-116 424.1 284 76.1
CBR_g50688 Chara braunii HOM05D004558 ORTHO05D005647 5.3e-104 382.1 243 75.7
Oeu021019.1 Olea europaea HOM05D004558 ORTHO05D005647 1.1e-101 374.4 322 64.6
BolC4t25242H Brassica oleracea HOM05D004558 ORTHO05D005647 4.7e-60 236.1 132 88.6
C04p35620 Brassica napus HOM05D004558 ORTHO05D005647 6.2e-60 235.7 132 87.9
CBR_g55376 Chara braunii HOM05D004558 ORTHO05D005647 1.3e-52 211.5 376 37.5
SEGI_05566 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 1.3e-49 201.4 118 81.4
SEGI_20922 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 2.9e-49 200.3 118 80.5
C08p32210 Brassica napus HOM05D004558 ORTHO05D005647 3.6e-44 183.3 104 89.4
A04p03620 Brassica napus HOM05D004558 ORTHO05D005647 2.4e-43 180.6 103 89.3
BraA04t16073Z Brassica rapa HOM05D004558 ORTHO05D005647 2.4e-43 180.6 103 89.3
BcaC02g09879 Brassica carinata HOM05D004558 ORTHO05D005647 2.3e-38 164.1 94 88.3
Pp3c2_30650 Physcomitrium patens HOM05D004558 ORTHO05D005647 2.4e-35 154.1 101 77.2
CDE02G4696 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 4.0e-35 153.3 94 80.9
Lalb_Chr22g0357681 Lupinus albus HOM05D004558 ORTHO05D005647 2.1e-31 141.0 102 74.5
BcaB02g08342 Brassica carinata HOM05D004558 ORTHO05D005647 2.8e-28 130.6 105 71.4
Ah.13g077400 Amaranthus hybridus HOM05D004558 ORTHO05D000435 2.6e-26 124.0 148 51.4
ClCG10G010310 Citrullus lanatus HOM05D004558 ORTHO05D005647 2.5e-24 117.5 71 76.1
AagrBONN_evm.TU.Sc2ySwM_368.2127 Anthoceros agrestis HOM05D004558 ORTHO05D005647 2.3e-22 110.9 59 88.1
ClCG10G010320 Citrullus lanatus HOM05D004558 ORTHO05D005647 1.5e-21 108.2 81 70.4
MD00G1107700 Malus domestica HOM05D004558 ORTHO05D005647 4.3e-21 106.7 62 82.3
AagrBONN_evm.TU.Sc2ySwM_344.4282 Anthoceros agrestis HOM05D004558 ORTHO05D000003 9.0e-19 99.0 59 83.1
Lalb_Chr22g0358091 Lupinus albus HOM05D004558 ORTHO05D005647 1.5e-18 98.2 47 87.2
Lalb_Chr22g0358071 Lupinus albus HOM05D004558 ORTHO05D239964 3.0e-14 84.0 83 61.4
SEGI_00644 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 7.4e-13 79.3 42 92.9
Lalb_Chr22g0358081 Lupinus albus HOM05D004558 ORTHO05D005647 3.1e-11 73.9 39 89.7
MSTRG.26191 Avicennia marina HOM05D004558 ORTHO05D087779 7.9e-07 59.3 53 58.5


User provided reference genes

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