Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc701.1 Carica papaya HOM05D000113 ORTHO05D028564 2.0e-150 535.8 286 100.0
QL03p054215 Quercus lobata HOM05D000113 ORTHO05D004634 8.5e-32 141.7 267 39.7
Dinv27008 Davidia involucrata HOM05D000113 ORTHO05D004634 3.2e-31 139.8 281 38.8
Ciclev10030531m.g Citrus clementina HOM05D000113 ORTHO05D004634 6.7e-29 132.1 272 41.9
TWI18G0274 Tripterygium wilfordii HOM05D000113 ORTHO05D004634 8.8e-29 131.7 272 40.1
CiPaw.05G112500 Carya illinoinensis HOM05D000113 ORTHO05D004634 2.2e-27 127.1 270 38.5
Actinidia30661 Actinidia chinensis HOM05D000113 ORTHO05D004634 1.4e-26 124.4 274 38.7
Haze_12387 Corylus avellana HOM05D000113 ORTHO05D004634 4.1e-26 122.9 269 42.4
Lj3g0026728 Lotus japonicus HOM05D000113 ORTHO05D004634 2.0e-25 120.6 271 37.6
TAR622G0398 Trochodendron aralioides HOM05D000113 ORTHO05D004634 7.7e-25 118.6 272 39.0
CSS0001396 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D004634 1.0e-24 118.2 271 39.9
Duzib187G1430 Durio zibethinus HOM05D000113 ORTHO05D004634 1.0e-24 118.2 224 41.5
Prupe.1G229100 Prunus persica HOM05D000113 ORTHO05D004634 2.9e-24 116.7 278 38.5
Rhsim12G0028300 Rhododendron simsii HOM05D000113 ORTHO05D004634 4.2e-23 112.8 271 35.4
MD16G1117100 Malus domestica HOM05D000113 ORTHO05D004634 5.5e-23 112.5 285 36.1
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 9.4e-23 111.7 263 39.2
THA.LOC104820521 Tarenaya hassleriana HOM05D000113 ORTHO05D004634 1.2e-22 111.3 250 35.2
FvH4_4g24000 Fragaria vesca HOM05D000113 ORTHO05D004634 2.1e-22 110.5 288 35.4
Ca_01274_v3 Cicer arietinum L. HOM05D000113 ORTHO05D004634 3.6e-22 109.8 264 34.1
RcHm_v2.0_Chr4g0430661 Rosa chinensis HOM05D000113 ORTHO05D004634 3.6e-22 109.8 287 36.2
FAN12G3517 Fragaria x ananassa HOM05D000113 ORTHO05D004634 1.0e-21 108.2 274 35.4
Lj8C80G9 Lonicera japonica HOM05D000113 ORTHO05D004634 3.0e-21 106.7 270 37.0
CAN.G959.46 Capsicum annuum HOM05D000113 ORTHO05D004634 5.7e-20 102.4 273 34.8
Glyma.13G342400 Glycine max HOM05D000113 ORTHO05D004634 5.7e-20 102.4 268 35.4
FAN17G0033 Fragaria x ananassa HOM05D000113 ORTHO05D004634 7.5e-20 102.1 288 34.0
Carub.0006s1118 Capsella rubella HOM05D000113 ORTHO05D004634 6.3e-19 99.0 259 34.4
Thecc.07G168000 Theobroma cacao HOM05D000113 ORTHO05D004634 1.1e-18 98.2 266 35.3
vmacro01072 Vaccinium macrocarpon HOM05D000113 ORTHO05D004634 4.1e-18 96.3 250 36.4
Eucgr.H04653 Eucalyptus grandis HOM05D000113 ORTHO05D004634 9.1e-18 95.1 249 36.1
Manes.16G136600 Manihot esculenta HOM05D000113 ORTHO05D004634 1.2e-17 94.7 266 34.6
Glyma.15G031900 Glycine max HOM05D000113 ORTHO05D004634 2.0e-17 94.0 269 33.8
Lalb_Chr14g0372271 Lupinus albus HOM05D000113 ORTHO05D004634 2.0e-17 94.0 271 33.6
Aa31LG9G13310 Aethionema arabicum HOM05D000113 ORTHO05D004634 1.3e-16 91.3 257 33.9
PGSC0003DMG400007192 Solanum tuberosum HOM05D000113 ORTHO05D004634 3.8e-16 89.7 264 33.3
Sopen10g028600 Solanum pennellii HOM05D000113 ORTHO05D004634 6.5e-16 89.0 264 33.7
VMungo1080G1368 Vigna mungo HOM05D000113 ORTHO05D004634 8.5e-16 88.6 258 35.3
AL6G23600 Arabidopsis lyrata HOM05D000113 ORTHO05D004634 1.1e-15 88.2 193 34.7
MBI01_g09378_MAGBIO Magnolia biondii HOM05D000113 ORTHO05D004634 1.1e-15 88.2 265 34.3
Atru.chr11.2295 Acer truncatum HOM05D000033 ORTHO05D001688 2.5e-15 87.0 179 40.8
AT5G13010 Arabidopsis thaliana HOM05D000113 ORTHO05D004634 2.5e-15 87.0 218 34.9
HanXRQChr12g0385401 Helianthus annuus HOM05D000113 ORTHO05D004634 3.2e-15 86.7 266 32.7
Thhalv10012468m.g Eutrema salsugineum HOM05D000113 ORTHO05D004634 5.5e-15 85.9 202 34.2
Nn4g22369 Nelumbo nucifera HOM05D000113 ORTHO05D004634 5.5e-15 85.9 236 36.0
Nitab4.5_0000148g0090 Nicotiana tabacum HOM05D000113 ORTHO05D004634 9.5e-15 85.1 261 34.1
Solyc10g076910.2 Solanum lycopersicum HOM05D000113 ORTHO05D004634 9.5e-15 85.1 264 32.2
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 1.6e-14 84.3 271 32.1
Medtr2g098440 Medicago truncatula HOM05D000113 ORTHO05D004634 2.1e-14 84.0 265 32.1
Gohir.A13G122700 Gossypium hirsutum HOM05D000113 ORTHO05D004634 3.6e-14 83.2 185 39.5
BcaNung01180 Brassica carinata HOM05D000113 ORTHO05D004634 6.1e-14 82.4 257 31.1
Gohir.D13G126800 Gossypium hirsutum HOM05D000113 ORTHO05D004634 8.0e-14 82.0 185 39.5
Gorai.013G141900 Gossypium raimondii HOM05D000113 ORTHO05D004634 8.0e-14 82.0 185 39.5
Migut.E00026 Erythranthe guttata HOM05D000113 ORTHO05D004634 1.0e-13 81.6 267 31.8
Phvul.L011643 Phaseolus vulgaris HOM05D000113 ORTHO05D004634 1.4e-13 81.3 268 33.6
Sed0009802 Sechium edule HOM05D000113 ORTHO05D004634 1.8e-13 80.9 277 31.0
Cc09_g10090 Coffea canephora HOM05D000113 ORTHO05D004634 2.3e-13 80.5 264 33.7
Potri.010G172500 Populus trichocarpa HOM05D000113 ORTHO05D004634 4.0e-13 79.7 267 35.2
MSTRG.13314 Avicennia marina HOM05D000113 ORTHO05D004634 6.8e-13 79.0 236 35.2
PSO017G2450 Papaver somniferum HOM05D000113 ORTHO05D004634 6.8e-13 79.0 275 33.1
Sp6g30960 Schrenkiella parvula HOM05D000113 ORTHO05D004634 1.2e-12 78.2 255 31.4
Sabra10G0131700 Salix brachista HOM05D000113 ORTHO05D004634 1.5e-12 77.8 267 34.5
BraA02t05143Z Brassica rapa HOM05D000113 ORTHO05D004634 5.7e-12 75.9 266 29.3
ECA234G1819 Erigeron canadensis HOM05D000113 ORTHO05D004634 5.7e-12 75.9 270 30.4
arahy.Tifrunner.gnm1.ann1.LY2VHI Arachis hypogaea HOM05D000113 ORTHO05D004634 7.5e-12 75.5 242 31.8
BolC2t06530H Brassica oleracea HOM05D000113 ORTHO05D004634 7.5e-12 75.5 254 28.7
SGA_v2.0_scaffold87G27143 Striga asiatica HOM05D000113 ORTHO05D004634 7.5e-12 75.5 268 31.7
arahy.Tifrunner.gnm1.ann1.LX1KXR Arachis hypogaea HOM05D000113 ORTHO05D004634 4.9e-11 72.8 242 31.4
PGR119G0528 Punica granatum HOM05D000113 ORTHO05D004634 8.3e-11 72.0 185 35.7
MELO3C015733.2 Cucumis melo HOM05D000113 ORTHO05D004634 2.4e-10 70.5 270 30.4
Nitab4.5_0008170g0020 Nicotiana tabacum HOM05D000113 ORTHO05D004634 2.4e-10 70.5 323 29.4
CANSAT80G2661 Cannabis sativa HOM05D000113 ORTHO05D004634 3.1e-10 70.1 269 29.0
Aqoxy1G00504 Aquilegia oxysepala HOM05D000113 ORTHO05D004634 1.6e-09 67.8 271 33.6
A02p01640 Brassica napus HOM05D000113 ORTHO05D004634 1.6e-09 67.8 255 29.0
Lsat_1_v5_gn_4_3040 Lactuca sativa HOM05D000113 ORTHO05D004634 4.5e-09 66.2 263 30.8
Oeu019036.1 Olea europaea HOM05D000113 ORTHO05D004634 4.5e-09 66.2 183 33.3
CsaV3_7G027360 Cucumis sativus L. HOM05D000113 ORTHO05D004634 1.3e-08 64.7 269 29.4
C02p05850 Brassica napus HOM05D000113 ORTHO05D004634 1.7e-08 64.3 256 27.7
Hund14457 Selenicereus undatus HOM05D000113 ORTHO05D004634 2.9e-08 63.5 283 32.2
SalBow8G3598 Salvia bowleyana HOM05D000113 ORTHO05D004634 3.8e-08 63.2 186 36.0
Gohir.D12G178188 Gossypium hirsutum HOM05D000050 ORTHO05D028564 6.6e-08 62.4 93 43.0
DCAR_030388 Daucus carota HOM05D000113 ORTHO05D004634 3.3e-07 60.1 255 28.6
Gorai.002G192300 Gossypium raimondii HOM05D047346 ORTHO05D028564 1.6e-06 57.8 72 45.8
Gohir.D01G155160 Gossypium hirsutum HOM05D047346 ORTHO05D028564 2.8e-06 57.0 72 45.8


User provided reference genes

Program Settings