Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 2.4e-99 365.5 186 100.0
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 4.3e-77 291.6 173 81.5
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 1.6e-76 289.7 173 83.2
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 2.8e-76 288.9 173 79.8
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 3.7e-76 288.5 173 79.2
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 6.2e-76 287.7 173 80.9
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 1.1e-75 287.0 173 80.9
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 1.1e-75 287.0 173 80.9
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 1.4e-75 286.6 172 82.6
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 1.4e-75 286.6 173 78.6
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 1.8e-75 286.2 173 78.6
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 1.8e-75 286.2 173 79.2
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.8e-75 286.2 173 78.6
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 2.4e-75 285.8 173 78.6
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 2.4e-75 285.8 173 79.8
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 3.1e-75 285.4 173 79.8
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 3.1e-75 285.4 173 79.8
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 3.1e-75 285.4 173 79.2
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 4.0e-75 285.0 173 83.2
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 4.0e-75 285.0 173 79.8
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 4.0e-75 285.0 172 83.1
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 5.3e-75 284.6 173 80.9
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 9.0e-75 283.9 173 78.0
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 9.0e-75 283.9 173 79.2
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 1.2e-74 283.5 173 80.9
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 1.2e-74 283.5 173 79.2
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 1.5e-74 283.1 173 81.5
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 2.0e-74 282.7 169 79.9
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 2.0e-74 282.7 173 79.8
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 2.6e-74 282.3 173 78.0
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 2.6e-74 282.3 173 78.0
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 2.6e-74 282.3 173 78.0
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 3.4e-74 282.0 173 78.0
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 3.4e-74 282.0 173 78.0
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 3.4e-74 282.0 173 79.2
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 3.4e-74 282.0 173 80.3
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 4.5e-74 281.6 173 80.3
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 5.8e-74 281.2 173 77.5
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 5.8e-74 281.2 173 78.0
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 5.8e-74 281.2 173 79.8
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 5.8e-74 281.2 173 80.3
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 1.0e-73 280.4 173 78.0
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 1.0e-73 280.4 173 78.0
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 1.0e-73 280.4 173 79.8
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 1.7e-73 279.6 173 76.9
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 2.2e-73 279.3 173 78.6
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 2.2e-73 279.3 173 78.0
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 2.9e-73 278.9 173 77.5
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 6.5e-73 277.7 173 78.6
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 6.5e-73 277.7 172 77.9
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 6.5e-73 277.7 173 77.5
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 1.1e-72 276.9 173 76.3
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 1.9e-72 276.2 173 78.0
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 2.5e-72 275.8 173 77.5
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 2.5e-72 275.8 173 76.9
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 3.2e-72 275.4 173 77.5
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 3.2e-72 275.4 191 72.3
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 3.2e-72 275.4 173 78.0
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 4.2e-72 275.0 173 77.5
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 4.2e-72 275.0 173 75.7
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 5.5e-72 274.6 173 77.5
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 1.2e-71 273.5 173 75.1
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 1.2e-71 273.5 173 78.0
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 1.6e-71 273.1 173 77.5
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 2.7e-71 272.3 173 76.3
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 3.5e-71 271.9 173 77.5
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 3.5e-71 271.9 173 78.0
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 4.6e-71 271.6 173 75.7
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 6.0e-71 271.2 173 78.6
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 6.0e-71 271.2 173 78.0
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 6.0e-71 271.2 173 76.9
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 6.0e-71 271.2 173 75.7
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 7.9e-71 270.8 173 75.7
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 1.0e-70 270.4 181 74.6
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 1.0e-70 270.4 173 75.1
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 1.3e-70 270.0 172 75.6
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 1.8e-70 269.6 173 76.3
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 1.8e-70 269.6 173 74.0
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 3.0e-70 268.9 173 75.1
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 5.1e-70 268.1 173 77.5
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 5.1e-70 268.1 173 76.9
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 5.1e-70 268.1 173 73.4
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 5.1e-70 268.1 173 74.6
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.1e-69 266.9 211 65.9
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 3.3e-69 265.4 173 72.8
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 4.3e-69 265.0 173 72.8
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 4.3e-69 265.0 173 76.3
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 7.4e-69 264.2 173 73.4
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 1.6e-68 263.1 173 74.6
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 3.7e-68 261.9 173 73.4
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 1.4e-67 260.0 174 71.8
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 1.4e-67 260.0 173 71.1
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 2.4e-67 259.2 173 73.4
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 4.1e-67 258.5 173 74.6
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 4.1e-67 258.5 174 74.7
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 6.9e-67 257.7 173 72.8
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 9.0e-67 257.3 173 69.9
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 1.2e-66 256.9 173 75.7
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 5.0e-65 251.5 173 69.9
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 1.1e-61 240.4 192 64.1
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 5.7e-61 238.0 172 64.0
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 7.4e-61 237.7 173 68.2
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 1.8e-59 233.0 175 64.0
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 1.7e-52 209.9 135 77.8
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 3.7e-52 208.8 173 60.7
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.1e-51 207.2 174 58.6
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 7.0e-51 204.5 174 56.3
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 9.1e-51 204.1 167 58.7
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 8.0e-47 191.0 173 53.2
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 2.3e-46 189.5 181 58.6
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 7.4e-45 184.5 121 71.1
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 7.4e-45 184.5 128 69.5
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 5.3e-43 178.3 174 49.4
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 7.2e-40 167.9 125 60.0
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 1.8e-38 163.3 173 54.3
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 2.0e-34 149.8 173 50.3
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 1.2e-31 140.6 180 43.9
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 3.6e-31 139.0 128 49.2
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 1.2e-26 124.0 190 39.5
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 7.7e-26 121.3 128 43.8
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 1.6e-23 113.6 93 57.0
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 3.7e-20 102.4 170 38.2
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 7.8e-18 94.7 61 73.8
Lj8A567T30 Lonicera japonica HOM05D004433 ORTHO05D005251 1.0e-17 94.4 52 90.4
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.0e-17 94.4 58 72.4
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.3e-17 94.0 91 48.4
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 2.3e-17 93.2 63 73.0
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 5.0e-17 92.0 91 48.4
SGA_v2.0_scaffold266G46140 Striga asiatica HOM05D004433 ORTHO05D005251 2.5e-16 89.7 57 80.7
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 2.8e-15 86.3 171 33.9
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 8.0e-15 84.7 54 72.2
HPP92_005558 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.0e-14 84.3 53 75.5
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 9.8e-13 77.8 183 31.7
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 1.4e-11 73.9 41 80.5
Ca_28629_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 2.3e-06 56.6 50 54.0


User provided reference genes

Program Settings