Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc657.2 Carica papaya HOM05D001331 ORTHO05D001157 0.0e+00 1092.0 568 100.0
QL01p052315 Quercus lobata HOM05D001331 ORTHO05D001157 2.5e-107 393.7 637 43.2
GSVIVG01004000001 Vitis vinifera HOM05D001331 ORTHO05D001157 4.2e-107 392.9 601 44.4
CiPaw.07G084600 Carya illinoinensis HOM05D001331 ORTHO05D001157 3.6e-106 389.8 629 43.6
Haze_04621 Corylus avellana HOM05D001331 ORTHO05D001157 6.3e-103 379.0 611 43.5
Cfa006230 Carpinus fangiana HOM05D001331 ORTHO05D001157 3.1e-102 376.7 614 43.3
Potri.010G178600 Populus trichocarpa HOM05D001331 ORTHO05D001157 4.7e-98 362.8 545 45.3
CiPaw.08G111400 Carya illinoinensis HOM05D001331 ORTHO05D001157 8.0e-98 362.1 640 42.0
Ciclev10014064m.g Citrus clementina HOM05D001331 ORTHO05D001157 8.0e-98 362.1 601 40.9
Dinv17147 Davidia involucrata HOM05D001331 ORTHO05D001157 3.3e-96 356.7 673 39.1
Thecc.05G113300 Theobroma cacao HOM05D001331 ORTHO05D001157 5.7e-96 355.9 571 43.8
Potri.008G078500 Populus trichocarpa HOM05D001331 ORTHO05D001157 1.2e-93 348.2 583 43.1
Sabra10G0137000 Salix brachista HOM05D001331 ORTHO05D001157 1.6e-93 347.8 543 43.5
Duzib177G1162 Durio zibethinus HOM05D001331 ORTHO05D001157 4.5e-93 346.3 592 41.0
TWI75G0046 Tripterygium wilfordii HOM05D001331 ORTHO05D001157 5.5e-91 339.3 594 43.3
TWI36G0320 Tripterygium wilfordii HOM05D001331 ORTHO05D001157 3.6e-90 336.7 589 42.1
Manes.12G001000 Manihot esculenta HOM05D001331 ORTHO05D001157 6.1e-90 335.9 561 41.2
Sabra08G0058300 Salix brachista HOM05D001331 ORTHO05D001157 6.1e-90 335.9 584 41.1
Gorai.002G148100 Gossypium raimondii HOM05D001331 ORTHO05D001157 4.0e-89 333.2 563 42.5
Gohir.D13G093600 Gossypium hirsutum HOM05D001331 ORTHO05D001157 8.8e-89 332.0 563 42.5
Gorai.004G264700 Gossypium raimondii HOM05D001331 ORTHO05D001157 5.7e-88 329.3 568 40.8
Gohir.D08G248100 Gossypium hirsutum HOM05D001331 ORTHO05D001157 2.2e-87 327.4 570 40.9
Gohir.A08G227800 Gossypium hirsutum HOM05D001331 ORTHO05D001157 2.8e-87 327.0 570 40.7
Gohir.D13G118300 Gossypium hirsutum HOM05D001331 ORTHO05D001157 4.1e-86 323.2 557 42.7
Actinidia34705 Actinidia chinensis HOM05D001331 ORTHO05D001157 3.5e-85 320.1 599 41.9
Gorai.013G132700 Gossypium raimondii HOM05D001331 ORTHO05D001157 7.7e-85 318.9 557 42.4
Manes.13G000048 Manihot esculenta HOM05D001331 ORTHO05D001157 1.1e-83 315.1 563 39.4
Gohir.A13G115300 Gossypium hirsutum HOM05D001331 ORTHO05D001157 3.2e-83 313.5 557 42.7
Atru.chr10.160 Acer truncatum HOM05D001331 ORTHO05D001157 4.2e-83 313.2 567 40.2
Duzib128G1510 Durio zibethinus HOM05D001331 ORTHO05D001157 4.4e-80 303.1 545 40.4
Gohir.A13G089345 Gossypium hirsutum HOM05D001331 ORTHO05D001157 4.1e-78 296.6 560 40.0
Prupe.6G366000 Prunus persica HOM05D001331 ORTHO05D001157 1.6e-77 294.7 560 39.8
FvH4_6g00010 Fragaria vesca HOM05D001331 ORTHO05D001157 7.7e-77 292.4 574 38.5
CSS0037703 Camellia sinensis var. sinensis HOM05D001331 ORTHO05D001157 3.8e-76 290.0 660 35.0
THA.LOC104820935 Tarenaya hassleriana HOM05D001331 ORTHO05D001157 5.0e-76 289.7 534 41.2
FAN14G3793 Fragaria x ananassa HOM05D001331 ORTHO05D001157 1.1e-75 288.5 561 39.0
MD00G1016700 Malus domestica HOM05D001331 ORTHO05D001157 4.2e-75 286.6 565 38.1
Sp6g27890 Schrenkiella parvula HOM05D001331 ORTHO05D001157 7.2e-75 285.8 559 41.1
Cc09_g04200 Coffea canephora HOM05D001331 ORTHO05D001157 1.4e-73 281.6 615 36.3
AT5G16270 Arabidopsis thaliana HOM05D001331 ORTHO05D001157 1.8e-73 281.2 523 41.1
TAR636G2893 Trochodendron aralioides HOM05D001331 ORTHO05D001157 6.8e-73 279.3 697 33.7
AL6G27160 Arabidopsis lyrata HOM05D001331 ORTHO05D001157 1.2e-72 278.5 523 40.7
FAN02G0753 Fragaria x ananassa HOM05D001331 ORTHO05D001157 1.2e-72 278.5 573 37.5
Thhalv10012533m.g Eutrema salsugineum HOM05D001331 ORTHO05D001157 1.5e-72 278.1 528 40.0
BolC9t58913H Brassica oleracea HOM05D001331 ORTHO05D001157 2.0e-72 277.7 525 40.4
Aa31LG11G13350 Aethionema arabicum HOM05D001331 ORTHO05D001157 2.6e-72 277.3 563 39.3
Carub.0006s1446 Capsella rubella HOM05D001331 ORTHO05D001157 5.7e-72 276.2 525 41.5
MELO3C008766.2 Cucumis melo HOM05D001331 ORTHO05D001157 7.5e-72 275.8 546 40.5
CARHR197040 Cardamine hirsuta HOM05D001331 ORTHO05D001157 9.8e-72 275.4 550 38.4
CsaV3_2G009440 Cucumis sativus L. HOM05D001331 ORTHO05D001157 9.8e-72 275.4 553 40.7
BcaC04g18906 Brassica carinata HOM05D001331 ORTHO05D001157 3.7e-71 273.5 525 40.2
THA.LOC104802428 Tarenaya hassleriana HOM05D001331 ORTHO05D001157 3.7e-71 273.5 541 39.2
ClCG11G011030 Citrullus lanatus HOM05D001331 ORTHO05D001157 4.9e-71 273.1 562 39.9
COL.COLO4_22916 Corchorus olitorius HOM05D001331 ORTHO05D001157 1.1e-70 271.9 520 40.6
TAR365G0927 Trochodendron aralioides HOM05D001331 ORTHO05D001157 2.7e-69 267.3 690 33.6
Rhsim09G0127700 Rhododendron simsii HOM05D001331 ORTHO05D001157 4.5e-69 266.5 586 36.7
BcaB08g36861 Brassica carinata HOM05D001331 ORTHO05D001157 2.9e-68 263.8 531 40.7
BolC3t13383H Brassica oleracea HOM05D001331 ORTHO05D001157 8.6e-68 262.3 526 38.2
Actinidia31347 Actinidia chinensis HOM05D001331 ORTHO05D001157 1.9e-67 261.2 484 39.0
A10p22800 Brassica napus HOM05D001331 ORTHO05D006132 2.5e-67 260.8 517 39.3
BraA10t44346Z Brassica rapa HOM05D001331 ORTHO05D001157 2.5e-67 260.8 517 39.3
C03p08880 Brassica napus HOM05D001331 ORTHO05D001157 3.3e-67 260.4 526 38.0
Glyma.09G247600 Glycine max HOM05D001331 ORTHO05D001157 1.2e-66 258.5 617 37.1
THA.LOC104827169 Tarenaya hassleriana HOM05D001331 ORTHO05D001157 1.6e-66 258.1 558 38.4
A03p07640 Brassica napus HOM05D001331 ORTHO05D001157 3.6e-66 256.9 527 38.3
BraA03t10092Z Brassica rapa HOM05D001331 ORTHO05D001157 3.6e-66 256.9 527 38.3
Glyma.18G245000 Glycine max HOM05D001331 ORTHO05D001157 4.7e-66 256.5 640 36.1
Phvul.008G051500 Phaseolus vulgaris HOM05D001331 ORTHO05D001157 5.2e-65 253.1 602 35.5
BcaNung02228 Brassica carinata HOM05D001331 ORTHO05D001157 1.2e-64 251.9 529 39.7
DCAR_002143 Daucus carota HOM05D001331 ORTHO05D001157 5.8e-64 249.6 536 35.8
Ca_08018_v3 Cicer arietinum L. HOM05D001331 ORTHO05D001157 7.5e-64 249.2 620 34.2
MSTRG.343 Avicennia marina HOM05D001331 ORTHO05D001157 2.9e-63 247.3 569 35.7
MSTRG.9237 Avicennia marina HOM05D001331 ORTHO05D001157 2.9e-63 247.3 597 36.0
Medtr7g080575 Medicago truncatula HOM05D001331 ORTHO05D001157 1.4e-62 245.0 655 33.4
Oeu034713.1 Olea europaea HOM05D001331 ORTHO05D001157 7.0e-62 242.7 584 34.6
Oeu001222.1 Olea europaea HOM05D001331 ORTHO05D001157 1.2e-61 241.9 633 34.3
vmacro10422 Vaccinium macrocarpon HOM05D001331 ORTHO05D001157 1.0e-60 238.8 617 34.8
PGR031G2697 Punica granatum HOM05D001331 ORTHO05D001157 2.3e-60 237.7 551 35.8
CANSAT64G1741 Cannabis sativa HOM05D001331 ORTHO05D001157 3.9e-60 236.9 681 33.3
Sed0001975 Sechium edule HOM05D001331 ORTHO05D001157 6.6e-60 236.1 560 36.8
TPR.G22749 Trifolium pratense HOM05D001331 ORTHO05D001157 1.1e-59 235.3 640 33.0
Sed0000727 Sechium edule HOM05D001331 ORTHO05D001157 1.9e-59 234.6 399 43.9
arahy.Tifrunner.gnm1.ann1.AKP9LA Arachis hypogaea HOM05D001331 ORTHO05D001157 7.3e-59 232.6 577 36.7
Migut.F01839 Erythranthe guttata HOM05D001331 ORTHO05D001157 9.5e-59 232.3 536 36.9
BcaB01g04995 Brassica carinata HOM05D001331 ORTHO05D001157 1.6e-58 231.5 526 36.7
Lalb_Chr03g0038031 Lupinus albus HOM05D001331 ORTHO05D001157 1.6e-58 231.5 639 33.2
Lalb_Chr01g0020641 Lupinus albus HOM05D001331 ORTHO05D001157 2.8e-58 230.7 632 35.0
VMungo1383G1445 Vigna mungo HOM05D001331 ORTHO05D001157 3.6e-58 230.3 370 43.5
Oeu057537.1 Olea europaea HOM05D001331 ORTHO05D001157 8.0e-58 229.2 563 35.2
arahy.Tifrunner.gnm1.ann1.RBIZ8B Arachis hypogaea HOM05D001331 ORTHO05D001157 1.4e-57 228.4 577 37.3
BraA02t05316Z Brassica rapa HOM05D001331 ORTHO05D001157 3.1e-57 227.3 533 37.9
DCAR_031598 Daucus carota HOM05D001331 ORTHO05D001157 3.1e-57 227.3 606 33.0
Hund21934 Selenicereus undatus HOM05D001331 ORTHO05D001157 6.8e-57 226.1 588 33.5
Lj1g0022047 Lotus japonicus HOM05D001331 ORTHO05D001157 1.2e-56 225.3 624 34.6
SalBow1G6493 Salvia bowleyana HOM05D001331 ORTHO05D001157 2.0e-56 224.6 570 35.1
AUR62006611 Chenopodium quinoa HOM05D001331 ORTHO05D001157 2.6e-56 224.2 527 34.0
MSTRG.8189 Avicennia marina HOM05D001331 ORTHO05D001157 9.8e-56 222.2 598 33.9
Sc16g0010700 Simmondsia chinensis HOM05D001331 ORTHO05D001157 1.3e-55 221.9 550 33.8
BcaC03g18483 Brassica carinata HOM05D001331 ORTHO05D001157 2.9e-55 220.7 532 36.7
C02p08240 Brassica napus HOM05D001331 ORTHO05D001157 2.9e-55 220.7 532 36.8
Solyc11g008740.2 Solanum lycopersicum HOM05D001331 ORTHO05D001157 2.9e-55 220.7 615 31.9
Sopen11g004520 Solanum pennellii HOM05D001331 ORTHO05D001157 4.9e-55 219.9 623 32.3
AUR62000263 Chenopodium quinoa HOM05D001331 ORTHO05D001157 1.9e-54 218.0 511 32.9
Duzib106G0054 Durio zibethinus HOM05D001331 ORTHO05D001157 2.4e-54 217.6 492 35.8
BolC2t06746H Brassica oleracea HOM05D001331 ORTHO05D001157 4.1e-54 216.9 532 36.5
SalBow1G4268 Salvia bowleyana HOM05D001331 ORTHO05D001157 1.2e-53 215.3 578 34.4
Nn7g37491 Nelumbo nucifera HOM05D001331 ORTHO05D001157 2.1e-53 214.5 454 36.3
EL10Ac4g10033 Beta vulgaris HOM05D001331 ORTHO05D001157 1.5e-51 208.4 542 33.9
SalBow3G1815 Salvia bowleyana HOM05D001331 ORTHO05D001157 9.5e-51 205.7 327 43.4
Eucgr.B01452 Eucalyptus grandis HOM05D001331 ORTHO05D001157 1.2e-50 205.3 509 36.1
CAN.G691.14 Capsicum annuum HOM05D001331 ORTHO05D001157 1.4e-49 201.8 650 31.1
Ah.06g195190 Amaranthus hybridus HOM05D001331 ORTHO05D001157 5.2e-49 199.9 556 33.8
ECA238G2397 Erigeron canadensis HOM05D001331 ORTHO05D001157 8.9e-49 199.1 614 31.4
Nn1g09520 Nelumbo nucifera HOM05D001331 ORTHO05D001157 2.6e-48 197.6 525 33.7
SalBow1G2526 Salvia bowleyana HOM05D001331 ORTHO05D001157 1.9e-46 191.4 510 34.1
Nitab4.5_0005243g0010 Nicotiana tabacum HOM05D001331 ORTHO05D001157 5.4e-46 189.9 612 29.4
SGA_v2.0_scaffold62G21485 Striga asiatica HOM05D005147 ORTHO05D006132 5.4e-46 189.9 610 31.3
PSO675G1754 Papaver somniferum HOM05D001331 ORTHO05D001157 1.7e-44 184.9 556 32.6
unitig_0.g376 Utricularia gibba HOM05D001331 ORTHO05D001157 1.5e-43 181.8 502 34.9
Aqoxy2G04168 Aquilegia oxysepala HOM05D001331 ORTHO05D001157 2.5e-43 181.0 379 37.7
Psat3g101880 Pisum sativum HOM05D001331 ORTHO05D001157 2.8e-42 177.6 170 59.4
Peaxi162Scf00254g00420 Petunia axillaris HOM05D001331 ORTHO05D001157 1.3e-39 168.7 612 29.4
PSO017G0053 Papaver somniferum HOM05D001331 ORTHO05D001157 2.2e-39 167.9 242 43.0
CDE02G1510 Ceratophyllum demersum HOM05D001331 ORTHO05D001157 1.7e-36 158.3 530 30.6
CDE09G0405 Ceratophyllum demersum HOM05D001331 ORTHO05D001157 3.9e-36 157.1 205 48.3
Lsat_1_v5_gn_2_108360 Lactuca sativa HOM05D003813 ORTHO05D004557 1.1e-35 155.6 257 43.6
Nitab4.5_0000743g0180 Nicotiana tabacum HOM05D001331 ORTHO05D001157 1.5e-35 155.2 613 28.5
HanXRQChr14g0454801 Helianthus annuus HOM05D001331 ORTHO05D001157 9.0e-33 146.0 115 66.1
ATR0743G257 Amborella trichopoda HOM05D001331 ORTHO05D001157 1.7e-31 141.7 417 30.7
HPP92_013535 Vanilla planifolia HOM05D001331 ORTHO05D001157 4.6e-29 133.7 241 39.8
Os01g0897800 Oryza sativa ssp. japonica HOM05D001331 ORTHO05D001157 7.9e-29 132.9 340 35.9
SEGI_04629 Sequoiadendron giganteum HOM05D001331 ORTHO05D001157 2.1e-26 124.8 150 47.3
Zm00001eb144600 Zea mays HOM05D001331 ORTHO05D001157 1.2e-24 119.0 300 34.3
Lsat_1_v5_gn_9_70441 Lactuca sativa HOM05D001331 ORTHO05D001157 1.7e-23 115.2 149 47.0
Zm00001eb365670 Zea mays HOM05D001331 ORTHO05D001157 3.8e-23 114.0 226 37.6
HanXRQChr07g0194791 Helianthus annuus HOM05D001331 ORTHO05D001157 4.9e-23 113.6 741 23.8
Pp3c6_2850 Physcomitrium patens HOM05D001331 ORTHO05D001157 9.6e-19 99.4 123 41.5
Pp3c6_2600 Physcomitrium patens HOM05D001331 ORTHO05D001157 8.1e-18 96.3 124 41.9
SalBow1G8000 Salvia bowleyana HOM05D001331 ORTHO05D001157 1.4e-17 95.5 69 66.7
Mapoly0027s0147 Marchantia polymorpha HOM05D001331 ORTHO05D001157 4.9e-15 87.0 114 41.2
Lju1074A3G37 Lonicera japonica HOM05D001331 ORTHO05D001157 1.5e-08 65.5 141 34.8
AagrBONN_evm.TU.Sc2ySwM_228.2030 Anthoceros agrestis HOM05D001331 ORTHO05D001157 1.1e-06 59.3 270 24.8


User provided reference genes

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