Gene: Sopen11g004520

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g004520
  • Transcript Identifier Sopen11g004520.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 3007409-3020245 : negative

Gene Family Information

  • ID HOM05D001331
  • #Genes/#Species 472/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g004520.1

Descriptions

  • Description Encodes a SCC1/REC8 ortholog that may be involved in mitosis and may represent a mitotic cohesin. | sister chromatid cohesion 1 protein 4 (SYN4) | FUNCTIONS IN: molecular_function unknown | INVOLVED IN: sister chromatid cohesion | LOCATED IN: nuclear chromosome | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Rad21/Rec8 like protein, C-terminal , Rad21/Rec8 like protein, N-terminal | BEST Arabidopsis thaliana protein match is: Rad21/Rec8-like family protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0007062
IEA
InterProsister chromatid cohesion
GO:0070601
ISO
PLAZA Integrative Orthologycentromeric sister chromatid cohesion AT5G16270
GO:0006302
ISO
PLAZA Integrative Orthologydouble-strand break repair AT5G16270

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008278
IEA
InterProcohesin complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006910 Rad21/Rec8-like protein, N-terminal
IPR023093 ScpA-like, C-terminal
IPR036390 Winged helix DNA-binding domain superfamily
IPR006909 Rad21/Rec8-like protein, C-terminal, eukaryotic
IPR039781 Rad21/Rec8-like protein
Mapman id Description
13.3.4.1.3 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.mitotic-specific Kleisin-type component SCC1