Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc65.153 Carica papaya HOM05D000992 ORTHO05D001928 4.9e-98 361.3 206 100.0
Gorai.001G109900 Gossypium raimondii HOM05D000992 ORTHO05D001928 1.3e-50 203.8 167 61.7
Gohir.D07G102000 Gossypium hirsutum HOM05D000992 ORTHO05D001928 2.2e-50 203.0 167 61.7
Duzib248G0828 Durio zibethinus HOM05D000992 ORTHO05D001928 3.8e-50 202.2 167 62.3
Gohir.A07G097700 Gossypium hirsutum HOM05D000992 ORTHO05D001928 1.1e-49 200.7 167 61.1
Manes.17G077900 Manihot esculenta HOM05D000992 ORTHO05D001928 2.5e-49 199.5 166 60.2
Thecc.02G282800 Theobroma cacao HOM05D000992 ORTHO05D001928 2.5e-49 199.5 165 62.4
COL.COLO4_13161 Corchorus olitorius HOM05D000992 ORTHO05D001928 3.2e-49 199.1 165 75.2
Duzib251G0427 Durio zibethinus HOM05D000992 ORTHO05D001928 1.6e-48 196.8 170 66.5
Atru.chr11.373 Acer truncatum HOM05D000992 ORTHO05D001928 4.7e-48 195.3 169 72.2
Manes.15G128400 Manihot esculenta HOM05D000992 ORTHO05D001928 1.4e-47 193.7 171 72.5
Dinv07657 Davidia involucrata HOM05D000269 ORTHO05D000216 1.3e-45 187.2 168 55.4
Potri.008G130300 Populus trichocarpa HOM05D000992 ORTHO05D001928 7.0e-44 181.4 163 55.8
Dinv14423 Davidia involucrata HOM05D000992 ORTHO05D001928 1.2e-43 180.6 168 54.8
TWI75G1486 Tripterygium wilfordii HOM05D000992 ORTHO05D001928 1.2e-43 180.6 168 56.0
TWI31G0575 Tripterygium wilfordii HOM05D000992 ORTHO05D001928 2.7e-43 179.5 169 55.6
PGR119G0308 Punica granatum HOM05D000992 ORTHO05D001928 1.0e-42 177.6 165 54.5
Cfa008618 Carpinus fangiana HOM05D000992 ORTHO05D001928 2.2e-42 176.4 167 54.5
Potri.010G111800 Populus trichocarpa HOM05D000992 ORTHO05D001928 2.2e-42 176.4 171 65.5
CiPaw.06G011200 Carya illinoinensis HOM05D000992 ORTHO05D001928 1.5e-41 173.7 171 53.2
Actinidia04063 Actinidia chinensis HOM05D000992 ORTHO05D001928 2.5e-41 172.9 162 52.5
Sabra10G0082200 Salix brachista HOM05D000992 ORTHO05D001928 2.5e-41 172.9 175 64.0
TAR629G1759 Trochodendron aralioides HOM05D000992 ORTHO05D001928 5.5e-41 171.8 162 63.6
Eucgr.G02182 Eucalyptus grandis HOM05D000992 ORTHO05D001928 7.2e-41 171.4 162 53.1
TAR371G0875 Trochodendron aralioides HOM05D000992 ORTHO05D001928 7.2e-41 171.4 172 55.8
arahy.Tifrunner.gnm1.ann1.FYKT6P Arachis hypogaea HOM05D000992 ORTHO05D001928 2.7e-40 169.5 169 49.7
Ciclev10015444m.g Citrus clementina HOM05D000992 ORTHO05D001928 4.7e-40 168.7 177 63.3
Sabra08G0098900 Salix brachista HOM05D000992 ORTHO05D001928 4.7e-40 168.7 173 50.9
Actinidia18442 Actinidia chinensis HOM05D000992 ORTHO05D001928 1.4e-39 167.2 162 50.6
Ca_18738_v3 Cicer arietinum L. HOM05D000992 ORTHO05D001928 4.0e-39 165.6 165 49.7
Ca_30875_v3 Cicer arietinum L. HOM05D000992 ORTHO05D001928 4.0e-39 165.6 165 49.7
CANSAT64G2027 Cannabis sativa HOM05D000992 ORTHO05D001928 5.2e-39 165.2 165 56.4
HanXRQChr11g0320951 Helianthus annuus HOM05D000992 ORTHO05D001928 5.2e-39 165.2 164 51.8
Hma1.2p1_1764F.1_g301400 Hydrangea macrophylla HOM05D000992 ORTHO05D001928 5.2e-39 165.2 162 61.1
MD13G1024400 Malus domestica HOM05D000992 ORTHO05D001928 5.2e-39 165.2 165 54.5
Sc10g0008370 Simmondsia chinensis HOM05D000992 ORTHO05D001928 5.2e-39 165.2 165 51.5
vmacro00410 Vaccinium macrocarpon HOM05D000992 ORTHO05D001928 8.8e-39 164.5 168 50.0
Haze_10992 Corylus avellana HOM05D000992 ORTHO05D001928 1.5e-38 163.7 167 53.3
Hma1.2p1_1346F.1_g277200 Hydrangea macrophylla HOM05D000992 ORTHO05D001928 2.0e-38 163.3 162 60.5
Lj5g0010526 Lotus japonicus HOM05D000992 ORTHO05D001928 2.0e-38 163.3 165 49.7
CSS0018449 Camellia sinensis var. sinensis HOM05D000992 ORTHO05D001928 4.4e-38 162.2 165 49.1
arahy.Tifrunner.gnm1.ann1.MZBU3F Arachis hypogaea HOM05D000992 ORTHO05D001928 7.5e-38 161.4 179 46.9
THA.LOC104805068 Tarenaya hassleriana HOM05D000992 ORTHO05D001928 7.5e-38 161.4 163 50.9
Nn4g24190 Nelumbo nucifera HOM05D000992 ORTHO05D001928 9.8e-38 161.0 167 50.3
ECA247G3162 Erigeron canadensis HOM05D000992 ORTHO05D001928 1.7e-37 160.2 162 53.1
TPR.G27486 Trifolium pratense HOM05D000992 ORTHO05D001928 1.7e-37 160.2 165 47.9
SGA_v2.0_scaffold39G15183 Striga asiatica HOM05D000992 ORTHO05D001928 2.2e-37 159.8 162 50.6
Lsat_1_v5_gn_9_43601 Lactuca sativa HOM05D000992 ORTHO05D001928 4.8e-37 158.7 162 48.8
Glyma.07G218700 Glycine max HOM05D000992 ORTHO05D001928 6.3e-37 158.3 169 49.1
SHI03261 Sapria himalayana HOM05D000992 ORTHO05D001928 1.1e-36 157.5 171 49.7
Rhsim06G0241000 Rhododendron simsii HOM05D000992 ORTHO05D001928 2.4e-36 156.4 164 62.8
ECA232G2145 Erigeron canadensis HOM05D000992 ORTHO05D001928 4.1e-36 155.6 160 53.8
CSS0042156 Camellia sinensis var. sinensis HOM05D000992 ORTHO05D001928 5.4e-36 155.2 122 59.8
ClCG11G001240 Citrullus lanatus HOM05D000992 ORTHO05D001928 5.4e-36 155.2 172 50.0
Lsat_1_v5_gn_1_4261 Lactuca sativa HOM05D000992 ORTHO05D001928 9.1e-36 154.5 162 51.2
Oeu005277.1 Olea europaea HOM05D000992 ORTHO05D001928 9.1e-36 154.5 162 63.6
CARHR257330 Cardamine hirsuta HOM05D000992 ORTHO05D001928 1.6e-35 153.7 164 48.2
MD16G1027100 Malus domestica HOM05D000992 ORTHO05D001928 3.5e-35 152.5 177 52.0
RcHm_v2.0_Chr4g0441451 Rosa chinensis HOM05D000992 ORTHO05D001928 3.5e-35 152.5 165 49.1
Carub.0005s0043 Capsella rubella HOM05D000992 ORTHO05D001928 4.5e-35 152.1 164 51.8
Medtr4g084650 Medicago truncatula HOM05D000992 ORTHO05D001928 5.9e-35 151.8 169 45.0
SalBow8G2514 Salvia bowleyana HOM05D000992 ORTHO05D001928 7.7e-35 151.4 163 49.7
HanXRQChr02g0044681 Helianthus annuus HOM05D000992 ORTHO05D001928 1.0e-34 151.0 163 49.7
Solyc07g047970.4 Solanum lycopersicum HOM05D000992 ORTHO05D001928 1.3e-34 150.6 162 60.5
Sopen07g024400 Solanum pennellii HOM05D000992 ORTHO05D001928 1.3e-34 150.6 162 58.6
PGSC0003DMG400006156 Solanum tuberosum HOM05D000992 ORTHO05D001928 1.7e-34 150.2 162 49.4
AUR62023333 Chenopodium quinoa HOM05D000992 ORTHO05D001928 2.3e-34 149.8 162 48.8
Aqoxy7G00061 Aquilegia oxysepala HOM05D000992 ORTHO05D001928 3.8e-34 149.1 162 50.0
Cc11_g08530 Coffea canephora HOM05D000992 ORTHO05D001928 3.8e-34 149.1 155 59.4
Migut.E00433 Erythranthe guttata HOM05D000992 ORTHO05D001928 3.8e-34 149.1 162 49.4
Phvul.002G095100 Phaseolus vulgaris HOM05D000992 ORTHO05D001928 1.5e-33 147.1 180 44.4
VMungo0251G1193 Vigna mungo HOM05D000992 ORTHO05D001928 1.9e-33 146.7 179 44.7
AL5G10450 Arabidopsis lyrata HOM05D000992 ORTHO05D001928 3.3e-33 146.0 164 59.1
Nitab4.5_0007845g0030 Nicotiana tabacum HOM05D000992 ORTHO05D001928 4.2e-33 145.6 163 46.0
CsaV3_5G013310 Cucumis sativus L. HOM05D000992 ORTHO05D001928 5.5e-33 145.2 173 46.2
Sp2g12920 Schrenkiella parvula HOM05D000992 ORTHO05D001928 5.5e-33 145.2 162 43.2
unitig_22.g5587 Utricularia gibba HOM05D000992 ORTHO05D001928 7.2e-33 144.8 162 44.4
EL10Ac1g00687 Beta vulgaris HOM05D000992 ORTHO05D001928 9.5e-33 144.4 162 44.4
AT2G01470 Arabidopsis thaliana HOM05D000992 ORTHO05D001928 2.8e-32 142.9 164 60.4
AUR62038000 Chenopodium quinoa HOM05D000992 ORTHO05D001928 2.8e-32 142.9 160 45.6
Ah.05g177390 Amaranthus hybridus HOM05D000992 ORTHO05D001928 3.6e-32 142.5 163 44.8
MBI16_g37742_MAGBIO Magnolia biondii HOM05D000992 ORTHO05D001928 3.6e-32 142.5 173 55.5
Hund17156 Selenicereus undatus HOM05D000992 ORTHO05D001928 4.7e-32 142.1 192 40.6
CDE02G4261 Ceratophyllum demersum HOM05D000992 ORTHO05D001928 6.1e-32 141.7 165 44.8
PSO478G1659 Papaver somniferum HOM05D000992 ORTHO05D001928 6.1e-32 141.7 172 58.1
Peaxi162Scf00776g00324 Petunia axillaris HOM05D000992 ORTHO05D001928 1.8e-31 140.2 162 58.6
Lalb_Chr16g0385011 Lupinus albus HOM05D000992 ORTHO05D001928 2.3e-31 139.8 172 44.2
PSO017G5972 Papaver somniferum HOM05D000992 ORTHO05D001928 2.3e-31 139.8 167 53.9
Lalb_Chr05g0219541 Lupinus albus HOM05D000992 ORTHO05D001928 5.2e-31 138.7 173 43.4
Nitab4.5_0000441g0190 Nicotiana tabacum HOM05D000992 ORTHO05D001928 6.8e-31 138.3 163 44.8
Aa31LG2G8460 Aethionema arabicum HOM05D000992 ORTHO05D001928 8.9e-31 137.9 162 61.1
QL02p040832 Quercus lobata HOM05D000992 ORTHO05D001928 8.9e-31 137.9 162 50.0
C02p49570 Brassica napus HOM05D000992 ORTHO05D001928 1.2e-30 137.5 162 42.0
BcaC03g17042 Brassica carinata HOM05D000992 ORTHO05D001928 3.4e-30 136.0 162 42.6
BolC2t11036H Brassica oleracea HOM05D000992 ORTHO05D001928 3.4e-30 136.0 162 42.0
PSO063G7085 Papaver somniferum HOM05D000992 ORTHO05D001928 3.4e-30 136.0 168 50.6
BcaB07g30396 Brassica carinata HOM05D000992 ORTHO05D001928 5.7e-30 135.2 162 54.3
A02p32000 Brassica napus HOM05D000992 ORTHO05D001928 5.7e-30 135.2 162 54.9
BraA02t08211Z Brassica rapa HOM05D000992 ORTHO05D001928 5.7e-30 135.2 162 54.9
FAN07G2064 Fragaria x ananassa HOM05D000992 ORTHO05D001928 5.7e-30 135.2 162 44.4
Sed0025111 Sechium edule HOM05D000992 ORTHO05D001928 7.5e-30 134.8 215 47.0
QL01p001467 Quercus lobata HOM05D000992 ORTHO05D001928 1.7e-29 133.7 162 50.0
FvH4_4g32580 Fragaria vesca HOM05D000992 ORTHO05D001928 2.2e-29 133.3 162 43.8
PSO782G4161 Papaver somniferum HOM05D000992 ORTHO05D001928 2.2e-29 133.3 168 50.0
FAN17G2843 Fragaria x ananassa HOM05D000992 ORTHO05D001928 2.8e-29 132.9 162 43.8
SalBow7G0291 Salvia bowleyana HOM05D000992 ORTHO05D001928 2.8e-29 132.9 163 47.2
FAN12G1857 Fragaria x ananassa HOM05D000992 ORTHO05D001928 3.7e-29 132.5 162 43.8
QL11p050299 Quercus lobata HOM05D000992 ORTHO05D001928 3.7e-29 132.5 162 45.1
Thhalv10000916m.g Eutrema salsugineum HOM05D000992 ORTHO05D001928 1.4e-28 130.6 160 55.6
Actinidia04657 Actinidia chinensis HOM05D000992 ORTHO05D001928 1.8e-28 130.2 107 57.9
AT5G50550 Arabidopsis thaliana HOM05D000992 ORTHO05D001928 1.8e-28 130.2 164 52.4
AT5G50650 Arabidopsis thaliana HOM05D000992 ORTHO05D001928 1.8e-28 130.2 164 52.4
MD08G1204700 Malus domestica HOM05D000992 ORTHO05D001928 1.8e-28 130.2 107 58.9
SalBow1G5429 Salvia bowleyana HOM05D000992 ORTHO05D001928 3.1e-28 129.4 164 47.0
Peaxi162Scf00276g00615 Petunia axillaris HOM05D000992 ORTHO05D001928 4.1e-28 129.0 163 54.6
BcaC06g31305 Brassica carinata HOM05D000992 ORTHO05D001928 5.4e-28 128.6 162 51.2
BcaC06g34175 Brassica carinata HOM05D000992 ORTHO05D001928 5.4e-28 128.6 162 51.2
BolC7t43735H Brassica oleracea HOM05D000992 ORTHO05D001928 5.9e-27 125.2 162 42.0
BcaC06g34176 Brassica carinata HOM05D000137 ORTHO05D001928 1.3e-26 124.0 162 42.0
C07p31890 Brassica napus HOM05D000992 ORTHO05D001928 1.3e-26 124.0 162 42.0
HanXRQChr12g0377541 Helianthus annuus HOM05D000992 ORTHO05D001928 2.3e-26 123.2 164 42.7
BraA06t27316Z Brassica rapa HOM05D000992 ORTHO05D001928 6.6e-26 121.7 162 42.0
HPP92_027233 Vanilla planifolia HOM05D000992 ORTHO05D001928 6.6e-26 121.7 170 40.0
A06p44420 Brassica napus HOM05D000992 ORTHO05D001928 1.9e-25 120.2 162 41.4
GSVIVG01011745001 Vitis vinifera HOM05D000992 ORTHO05D001928 7.3e-25 118.2 81 65.4
DCAR_000389 Daucus carota HOM05D000992 ORTHO05D001928 3.0e-23 112.8 87 63.2
Os11g0610700 Oryza sativa ssp. japonica HOM05D000992 ORTHO05D001928 5.2e-23 112.1 171 47.4
Zm00001eb166990 Zea mays HOM05D000992 ORTHO05D001928 5.2e-23 112.1 165 36.4
Rhsim03G0186000 Rhododendron simsii HOM05D000992 ORTHO05D001928 1.2e-22 110.9 109 50.5
Rhsim03G0184800 Rhododendron simsii HOM05D000368 ORTHO05D000289 1.5e-22 110.5 83 61.4
SGA_v2.0_scaffold257G45690 Striga asiatica HOM05D000992 ORTHO05D001928 7.5e-22 108.2 81 61.7
ATR0579G172 Amborella trichopoda HOM05D000992 ORTHO05D001928 1.2e-19 100.9 106 43.4
MBI04_g44511_MAGBIO Magnolia biondii HOM05D000992 ORTHO05D001928 6.0e-19 98.6 84 57.1
DCAR_030227 Daucus carota HOM05D000992 ORTHO05D001928 1.0e-18 97.8 80 56.2
FAN10G0326 Fragaria x ananassa HOM05D000992 ORTHO05D001928 3.0e-18 96.3 102 51.0
DCAR_007301 Daucus carota HOM05D000992 ORTHO05D001928 3.9e-18 95.9 162 40.1
Rhsim03G0185500 Rhododendron simsii HOM05D000992 ORTHO05D001928 3.9e-18 95.9 70 61.4
CiPaw.05G250700 Carya illinoinensis HOM05D000992 ORTHO05D001928 8.6e-18 94.7 67 67.2
Hma1.2p1_3119F.1_g332850 Hydrangea macrophylla HOM05D000992 ORTHO05D001928 3.3e-17 92.8 114 44.7
Prupe.1G326100 Prunus persica HOM05D000992 ORTHO05D001928 9.5e-17 91.3 67 67.2
Lj4g0026372 Lotus japonicus HOM05D000992 ORTHO05D001928 6.8e-15 85.1 107 44.9
CARHR143990 Cardamine hirsuta HOM05D000992 ORTHO05D001928 8.9e-15 84.7 79 50.6
SEGI_28359 Sequoiadendron giganteum HOM05D000992 ORTHO05D001928 9.8e-14 81.3 163 42.9
Pp3c22_1410 Physcomitrium patens HOM05D000992 ORTHO05D001928 1.3e-13 80.9 162 29.6
Mapoly0068s0040 Marchantia polymorpha HOM05D000992 ORTHO05D001928 1.7e-13 80.5 162 35.2
FAN22G0786 Fragaria x ananassa HOM05D000992 ORTHO05D001928 2.2e-13 80.1 67 56.7
BcaB02g11084 Brassica carinata HOM05D000992 ORTHO05D001928 2.4e-12 76.6 114 37.7
Pp3c21_8000 Physcomitrium patens HOM05D000992 ORTHO05D001928 4.1e-12 75.9 104 36.5
Rhsim03G0185700 Rhododendron simsii HOM05D000368 ORTHO05D000289 9.2e-12 74.7 122 38.5
MBI07_g32656_MAGBIO Magnolia biondii HOM05D000992 ORTHO05D001928 1.2e-11 74.3 171 42.7
Rhsim03G0184600 Rhododendron simsii HOM05D000992 ORTHO05D001928 6.0e-11 72.0 159 30.8
Pp3c3_15480 Physcomitrium patens HOM05D000992 ORTHO05D001928 8.6e-10 68.2 99 40.4
Mapoly0009s0085 Marchantia polymorpha HOM05D000992 ORTHO05D001928 5.6e-09 65.5 114 35.1
Pp3c13_12620 Physcomitrium patens HOM05D000992 ORTHO05D001928 4.7e-08 62.4 98 38.8
BcaB05g23416 Brassica carinata HOM05D000992 ORTHO05D001928 6.2e-08 62.0 59 49.2
FAN10G1773 Fragaria x ananassa HOM05D000992 ORTHO05D001928 6.2e-08 62.0 167 28.7
AagrBONN_evm.TU.Sc2ySwM_117.3128 Anthoceros agrestis HOM05D000992 ORTHO05D001928 1.8e-07 60.5 99 42.4
Ca_10464_v3 Cicer arietinum L. HOM05D000992 ORTHO05D001928 6.8e-07 58.5 103 35.9
Dinv35242 Davidia involucrata HOM05D006627 ORTHO05D007753 1.5e-06 57.4 88 37.5
SEGI_21673 Sequoiadendron giganteum HOM05D000992 ORTHO05D001928 2.0e-06 57.0 72 43.1
TPR.G33941 Trifolium pratense HOM05D000992 ORTHO05D001928 2.6e-06 56.6 103 35.0
Psat6g174200 Pisum sativum HOM05D000992 ORTHO05D001928 3.4e-06 56.2 112 33.9
AagrBONN_evm.TU.Sc2ySwM_228.3928 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.8e-06 55.5 109 30.3
DCAR_022304 Daucus carota HOM05D000992 ORTHO05D001928 7.5e-06 55.1 67 46.3
Glyma.20G190300 Glycine max HOM05D000992 ORTHO05D001928 9.9e-06 54.7 112 35.7
HPP92_018839 Vanilla planifolia HOM05D000992 ORTHO05D001928 9.9e-06 54.7 110 33.6


User provided reference genes

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