Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc59.42 Carica papaya HOM05D003738 ORTHO05D005143 2.6e-69 265.4 145 100.0
Cpa.g.sc170.16 Carica papaya HOM05D003738 ORTHO05D005143 1.1e-14 84.0 47 85.1
Cc07_g08440 Coffea canephora HOM05D003738 ORTHO05D005143 1.4e-14 83.6 47 80.9
Manes.01G113700 Manihot esculenta HOM05D003738 ORTHO05D005143 1.4e-14 83.6 47 85.1
Phvul.008G243200 Phaseolus vulgaris HOM05D003738 ORTHO05D005143 1.8e-14 83.2 47 80.9
VMungo0647G1516 Vigna mungo HOM05D003738 ORTHO05D005143 1.8e-14 83.2 47 80.9
Lj2A438T57 Lonicera japonica HOM05D003738 ORTHO05D005143 2.4e-14 82.8 47 83.0
TAR374G1203 Trochodendron aralioides HOM05D003738 ORTHO05D005143 4.1e-14 82.0 47 83.0
GSVIVG01030948001 Vitis vinifera HOM05D003738 ORTHO05D005143 4.1e-14 82.0 47 80.9
Atru.chr1.1579 Acer truncatum HOM05D003738 ORTHO05D005143 5.3e-14 81.6 47 80.9
ECA238G0020 Erigeron canadensis HOM05D003738 ORTHO05D005143 5.3e-14 81.6 47 80.9
Migut.L00189 Erythranthe guttata HOM05D003738 ORTHO05D005143 6.9e-14 81.3 47 78.7
HanXRQChr07g0193781 Helianthus annuus HOM05D003738 ORTHO05D005143 6.9e-14 81.3 47 80.9
Peaxi162Scf00129g00317 Petunia axillaris HOM05D003738 ORTHO05D005143 6.9e-14 81.3 47 80.9
Peaxi162Scf00458g00011 Petunia axillaris HOM05D003738 ORTHO05D005143 6.9e-14 81.3 47 80.9
MSTRG.15310 Avicennia marina HOM05D003738 ORTHO05D005143 1.2e-13 80.5 47 76.6
CSS0050020 Camellia sinensis var. sinensis HOM05D003738 ORTHO05D005143 1.2e-13 80.5 47 78.7
GSVIVG01013575001 Vitis vinifera HOM05D003738 ORTHO05D005143 1.2e-13 80.5 46 80.4
AT5G17380 Arabidopsis thaliana HOM05D003738 ORTHO05D005143 2.0e-13 79.7 47 78.7
Nitab4.5_0002456g0020 Nicotiana tabacum HOM05D003738 ORTHO05D005143 2.0e-13 79.7 47 76.6
Psat1g052800 Pisum sativum HOM05D003738 ORTHO05D005143 2.0e-13 79.7 47 76.6
Sabra04G0063900 Salix brachista HOM05D003738 ORTHO05D005143 2.0e-13 79.7 47 78.7
SalBow4G0814 Salvia bowleyana HOM05D003738 ORTHO05D005143 2.0e-13 79.7 47 78.7
Solyc02g091100.3 Solanum lycopersicum HOM05D003738 ORTHO05D005143 2.0e-13 79.7 47 78.7
Sopen02g035750 Solanum pennellii HOM05D003738 ORTHO05D005143 2.0e-13 79.7 47 78.7
PGSC0003DMG400030633 Solanum tuberosum HOM05D003738 ORTHO05D005143 2.0e-13 79.7 47 78.7
TWI77G0590 Tripterygium wilfordii HOM05D003738 ORTHO05D005143 2.0e-13 79.7 47 80.9
vmacro05488 Vaccinium macrocarpon HOM05D003738 ORTHO05D005143 2.0e-13 79.7 47 78.7
CiPaw.03G065800 Carya illinoinensis HOM05D003738 ORTHO05D005143 2.6e-13 79.3 47 78.7
COL.COLO4_12270 Corchorus olitorius HOM05D003738 ORTHO05D005143 2.6e-13 79.3 47 80.9
COL.COLO4_27155 Corchorus olitorius HOM05D003738 ORTHO05D005143 2.6e-13 79.3 47 80.9
Dinv34815 Davidia involucrata HOM05D003738 ORTHO05D005143 2.6e-13 79.3 47 78.7
Gohir.A11G166650 Gossypium hirsutum HOM05D003738 ORTHO05D005143 2.6e-13 79.3 47 80.9
Gohir.D11G173000 Gossypium hirsutum HOM05D003738 ORTHO05D005143 2.6e-13 79.3 47 80.9
Gorai.007G185300 Gossypium raimondii HOM05D003738 ORTHO05D005143 2.6e-13 79.3 47 80.9
Lsat_1_v5_gn_2_80860 Lactuca sativa HOM05D003738 ORTHO05D005143 2.6e-13 79.3 47 78.7
Nn4g24034 Nelumbo nucifera HOM05D003738 ORTHO05D005143 2.6e-13 79.3 47 80.9
Actinidia36345 Actinidia chinensis HOM05D003738 ORTHO05D005143 3.4e-13 79.0 47 78.7
CAN.G625.63 Capsicum annuum HOM05D003738 ORTHO05D005143 3.4e-13 79.0 47 76.6
Cfa007882 Carpinus fangiana HOM05D003738 ORTHO05D005143 3.4e-13 79.0 47 76.6
Haze_14195 Corylus avellana HOM05D003738 ORTHO05D005143 3.4e-13 79.0 47 76.6
Lj2g0012793 Lotus japonicus HOM05D003738 ORTHO05D005143 3.4e-13 79.0 47 78.7
Nitab4.5_0007290g0010 Nicotiana tabacum HOM05D003738 ORTHO05D005143 3.4e-13 79.0 47 76.6
Nitab4.5_0011323g0010 Nicotiana tabacum HOM05D003738 ORTHO05D005143 3.4e-13 79.0 47 76.6
Rhsim10G0076800 Rhododendron simsii HOM05D003738 ORTHO05D005143 3.4e-13 79.0 47 78.7
RhsimUnG0202300 Rhododendron simsii HOM05D003738 ORTHO05D005143 3.4e-13 79.0 47 78.7
A10p22030 Brassica napus HOM05D003738 ORTHO05D005143 4.5e-13 78.6 47 76.6
C09p59780 Brassica napus HOM05D003738 ORTHO05D005143 4.5e-13 78.6 47 76.6
BraA10t44260Z Brassica rapa HOM05D003738 ORTHO05D005143 4.5e-13 78.6 47 76.6
CARHR195830 Cardamine hirsuta HOM05D003738 ORTHO05D005143 4.5e-13 78.6 47 76.6
Thhalv10013104m.g Eutrema salsugineum HOM05D003738 ORTHO05D005143 4.5e-13 78.6 47 76.6
Potri.004G094600 Populus trichocarpa HOM05D003738 ORTHO05D005143 4.5e-13 78.6 47 76.6
QL02p049823 Quercus lobata HOM05D003738 ORTHO05D005143 4.5e-13 78.6 47 78.7
HPP92_003826 Vanilla planifolia HOM05D003738 ORTHO05D005143 4.5e-13 78.6 47 74.5
AL6G28450 Arabidopsis lyrata HOM05D003738 ORTHO05D005143 5.9e-13 78.2 47 76.6
Carub.0006s1559 Capsella rubella HOM05D003738 ORTHO05D005143 5.9e-13 78.2 46 78.3
Oeu061823.1 Olea europaea HOM05D003738 ORTHO05D005143 5.9e-13 78.2 47 76.6
Aa31LG11G12270 Aethionema arabicum HOM05D003738 ORTHO05D005143 7.7e-13 77.8 47 76.6
arahy.Tifrunner.gnm1.ann1.KYQ4XK Arachis hypogaea HOM05D003738 ORTHO05D005143 7.7e-13 77.8 47 76.6
PSO017G1959 Papaver somniferum HOM05D003738 ORTHO05D005143 7.7e-13 77.8 47 78.7
PSO170G1643 Papaver somniferum HOM05D003738 ORTHO05D005143 7.7e-13 77.8 47 78.7
PSO455G0115 Papaver somniferum HOM05D003738 ORTHO05D005143 7.7e-13 77.8 47 78.7
arahy.Tifrunner.gnm1.ann1.TLT49F Arachis hypogaea HOM05D003738 ORTHO05D005143 1.0e-12 77.4 47 74.5
BcaB08g36776 Brassica carinata HOM05D003738 ORTHO05D005143 1.0e-12 77.4 47 74.5
BcaC04g18797 Brassica carinata HOM05D003738 ORTHO05D005143 1.0e-12 77.4 47 74.5
BolC9t58818H Brassica oleracea HOM05D003738 ORTHO05D005143 1.0e-12 77.4 47 74.5
Ciclev10013371m.g Citrus clementina HOM05D003738 ORTHO05D005143 1.0e-12 77.4 47 76.6
Glyma.02G238800 Glycine max HOM05D003738 ORTHO05D005143 1.0e-12 77.4 47 76.6
Glyma.14G207700 Glycine max HOM05D003738 ORTHO05D005143 1.0e-12 77.4 47 76.6
TAR629G2166 Trochodendron aralioides HOM05D003738 ORTHO05D005143 1.0e-12 77.4 47 76.6
Zm00001eb336870 Zea mays HOM05D003738 ORTHO05D005143 1.0e-12 77.4 47 74.5
Lalb_Chr02g0160571 Lupinus albus HOM05D003738 ORTHO05D005143 1.3e-12 77.0 47 74.5
Aqoxy3G00165 Aquilegia oxysepala HOM05D003738 ORTHO05D005143 1.7e-12 76.6 47 74.5
Ca_04135_v3 Cicer arietinum L. HOM05D003738 ORTHO05D005143 1.7e-12 76.6 47 74.5
Medtr6g004200 Medicago truncatula HOM05D003738 ORTHO05D005143 1.7e-12 76.6 47 74.5
TPR.G25203 Trifolium pratense HOM05D003738 ORTHO05D005143 1.7e-12 76.6 47 74.5
Ciclev10011371m.g Citrus clementina HOM05D003738 ORTHO05D005143 2.2e-12 76.3 47 76.6
Lalb_Chr06g0176761 Lupinus albus HOM05D003738 ORTHO05D005143 2.2e-12 76.3 47 76.6
MBI16_g21165_MAGBIO Magnolia biondii HOM05D003738 ORTHO05D005143 2.2e-12 76.3 47 76.6
Rhsim10G0075200 Rhododendron simsii HOM05D003738 ORTHO05D005143 2.2e-12 76.3 47 76.6
Sp6g26840 Schrenkiella parvula HOM05D003738 ORTHO05D005143 2.2e-12 76.3 47 74.5
TWI74G0253 Tripterygium wilfordii HOM05D003738 ORTHO05D005143 2.2e-12 76.3 47 78.7
arahy.Tifrunner.gnm1.ann1.UI9B1P Arachis hypogaea HOM05D003738 ORTHO05D005143 2.9e-12 75.9 45 77.8
MD00G1054500 Malus domestica HOM05D003738 ORTHO05D005143 5.0e-12 75.1 47 74.5
Prupe.3G150000 Prunus persica HOM05D003738 ORTHO05D005143 5.0e-12 75.1 47 74.5
THA.LOC104820853 Tarenaya hassleriana HOM05D003738 ORTHO05D005143 6.5e-12 74.7 47 74.5
CANSAT78G1141 Cannabis sativa HOM05D003738 ORTHO05D005143 8.5e-12 74.3 47 72.3
CDE06G1483 Ceratophyllum demersum HOM05D003738 ORTHO05D005143 8.5e-12 74.3 47 72.3
CDE07G0683 Ceratophyllum demersum HOM05D003738 ORTHO05D005143 8.5e-12 74.3 47 72.3
ClCG07G016430 Citrullus lanatus HOM05D003738 ORTHO05D005143 8.5e-12 74.3 47 74.5
Rhsim10G0074000 Rhododendron simsii HOM05D003738 ORTHO05D005143 8.5e-12 74.3 47 74.5
arahy.Tifrunner.gnm1.ann1.86RIW1 Arachis hypogaea HOM05D003738 ORTHO05D005143 1.1e-11 73.9 97 46.4
MD09G1258100 Malus domestica HOM05D003738 ORTHO05D005143 1.1e-11 73.9 47 70.2
EL10Ac2g04518 Beta vulgaris HOM05D003738 ORTHO05D005143 1.4e-11 73.6 47 74.5
RcHm_v2.0_Chr3g0494041 Rosa chinensis HOM05D003738 ORTHO05D005143 1.4e-11 73.6 46 73.9
Duzib138G1092 Durio zibethinus HOM05D003738 ORTHO05D005143 1.9e-11 73.2 47 72.3
Sed0022193 Sechium edule HOM05D003738 ORTHO05D005143 1.9e-11 73.2 47 72.3
SGA_v2.0_scaffold329G48870 Striga asiatica HOM05D003738 ORTHO05D005143 1.9e-11 73.2 47 70.2
AUR62023216 Chenopodium quinoa HOM05D003738 ORTHO05D005143 2.5e-11 72.8 47 72.3
AUR62023263 Chenopodium quinoa HOM05D003738 ORTHO05D005143 2.5e-11 72.8 47 72.3
CsaV3_4G010390 Cucumis sativus L. HOM05D003738 ORTHO05D005143 2.5e-11 72.8 47 72.3
Duzib133G1513 Durio zibethinus HOM05D003738 ORTHO05D005143 3.2e-11 72.4 47 72.3
FAN23G1334 Fragaria x ananassa HOM05D003738 ORTHO05D005143 3.2e-11 72.4 47 70.2
Rhsim10G0075800 Rhododendron simsii HOM05D003738 ORTHO05D005143 3.2e-11 72.4 47 72.3
FAN26G1505 Fragaria x ananassa HOM05D003738 ORTHO05D005143 4.2e-11 72.0 47 70.2
Pp3c3_25360 Physcomitrium patens HOM05D003738 ORTHO05D005143 4.2e-11 72.0 47 68.1
Ah.16g101450 Amaranthus hybridus HOM05D003738 ORTHO05D005143 5.5e-11 71.6 47 70.2
FvH4_1g28990 Fragaria vesca HOM05D003738 ORTHO05D005143 5.5e-11 71.6 47 70.2
FAN19G0768 Fragaria x ananassa HOM05D003738 ORTHO05D005143 5.5e-11 71.6 47 70.2
Mapoly0099s0049 Marchantia polymorpha HOM05D003738 ORTHO05D005143 5.5e-11 71.6 47 68.1
Eucgr.F02797 Eucalyptus grandis HOM05D003738 ORTHO05D005143 7.2e-11 71.2 47 72.3
ATR0057G018 Amborella trichopoda HOM05D003738 ORTHO05D005143 9.4e-11 70.9 47 68.1
AagrBONN_evm.TU.Sc2ySwM_369.580 Anthoceros agrestis HOM05D003738 ORTHO05D005143 1.2e-10 70.5 47 66.0
MELO3C010381.2 Cucumis melo HOM05D003738 ORTHO05D005143 1.2e-10 70.5 47 70.2
Dinv14852 Davidia involucrata HOM05D003738 ORTHO05D005143 1.2e-10 70.5 38 81.6
Sc10g0001020 Simmondsia chinensis HOM05D003738 ORTHO05D005143 1.2e-10 70.5 47 70.2
Hund13699 Selenicereus undatus HOM05D003738 ORTHO05D005143 3.6e-10 68.9 47 68.1
arahy.Tifrunner.gnm1.ann1.S5LGPQ Arachis hypogaea HOM05D003738 ORTHO05D005143 4.6e-10 68.6 47 70.2
SHI25638 Sapria himalayana HOM05D003738 ORTHO05D005143 1.8e-09 66.6 47 68.1
SEGI_09825 Sequoiadendron giganteum HOM05D003738 ORTHO05D005143 3.0e-09 65.9 46 65.2
arahy.Tifrunner.gnm1.ann1.XG2Q3Z Arachis hypogaea HOM05D003738 ORTHO05D005143 5.1e-09 65.1 47 66.0
arahy.Tifrunner.gnm1.ann1.N2UQDL Arachis hypogaea HOM05D003738 ORTHO05D005143 6.7e-09 64.7 45 66.7
Duzib114G0391 Durio zibethinus HOM05D003738 ORTHO05D005143 6.7e-09 64.7 46 65.2
arahy.Tifrunner.gnm1.ann1.3J26XN Arachis hypogaea HOM05D003738 ORTHO05D005143 1.5e-08 63.5 47 66.0
arahy.Tifrunner.gnm1.ann1.L98BBS Arachis hypogaea HOM05D003738 ORTHO05D005143 1.7e-07 60.1 46 65.2
Rhsim05G0052500 Rhododendron simsii HOM05D003738 ORTHO05D005143 2.2e-07 59.7 35 74.3
arahy.Tifrunner.gnm1.ann1.8AFI1C Arachis hypogaea HOM05D003738 ORTHO05D005143 2.8e-07 59.3 48 60.4
RhsimUnG0182900 Rhododendron simsii HOM05D003738 ORTHO05D005143 6.3e-07 58.2 39 61.5
arahy.Tifrunner.gnm1.ann1.85I739 Arachis hypogaea HOM05D003738 ORTHO05D005143 1.4e-06 57.0 42 59.5
Rhsim10G0074800 Rhododendron simsii HOM05D003738 ORTHO05D005143 2.4e-06 56.2 36 66.7
arahy.Tifrunner.gnm1.ann1.J2B3IW Arachis hypogaea HOM05D003738 ORTHO05D005143 9.1e-06 54.3 42 61.9


User provided reference genes

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