Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc54.44 Carica papaya HOM05D005108 ORTHO05D006171 2.0e-150 535.8 283 100.0
Dinv24598 Davidia involucrata HOM05D005108 ORTHO05D006171 4.2e-92 342.0 310 63.5
FAN10G0981 Fragaria x ananassa HOM05D005108 ORTHO05D006171 2.1e-91 339.7 291 66.7
FAN01G1063 Fragaria x ananassa HOM05D005108 ORTHO05D006171 1.0e-90 337.4 291 66.3
Ciclev10017460m.g Citrus clementina HOM05D005108 ORTHO05D006171 1.4e-90 337.0 314 62.1
Prupe.2G060900 Prunus persica HOM05D005108 ORTHO05D006171 4.0e-90 335.5 310 62.9
GSVIVG01027314001 Vitis vinifera HOM05D005108 ORTHO05D006171 4.0e-90 335.5 318 61.3
Manes.10G065200 Manihot esculenta HOM05D005108 ORTHO05D006171 6.8e-90 334.7 325 59.7
FvH4_7g05000 Fragaria vesca HOM05D005108 ORTHO05D006171 8.9e-90 334.3 310 62.9
FAN06G2034 Fragaria x ananassa HOM05D005108 ORTHO05D006171 8.9e-90 334.3 310 62.9
QL05p027656 Quercus lobata HOM05D005108 ORTHO05D006171 1.2e-89 334.0 311 60.1
CANSAT56G0991 Cannabis sativa HOM05D005108 ORTHO05D006171 2.0e-89 333.2 311 61.4
Ca_14181_v3 Cicer arietinum L. HOM05D005108 ORTHO05D006171 1.3e-88 330.5 315 60.3
arahy.Tifrunner.gnm1.ann1.3FCU7M Arachis hypogaea HOM05D005108 ORTHO05D006171 1.7e-88 330.1 308 61.0
RcHm_v2.0_Chr1g0331271 Rosa chinensis HOM05D005108 ORTHO05D006171 2.2e-88 329.7 306 62.4
Atru.chr12.1231 Acer truncatum HOM05D005108 ORTHO05D006171 2.8e-88 329.3 314 60.8
Gohir.D04G017700 Gossypium hirsutum HOM05D005108 ORTHO05D006171 3.7e-88 328.9 336 58.6
Lj2g0000078 Lotus japonicus HOM05D005108 ORTHO05D006171 4.9e-88 328.6 316 60.1
Nitab4.5_0005056g0040 Nicotiana tabacum HOM05D005108 ORTHO05D006171 4.9e-88 328.6 303 61.7
MD02G1265100 Malus domestica HOM05D005108 ORTHO05D006171 6.3e-88 328.2 307 62.5
TPR.G36949 Trifolium pratense HOM05D005108 ORTHO05D006171 1.1e-87 327.4 318 59.1
CAN.G134.52 Capsicum annuum HOM05D005108 ORTHO05D006171 1.8e-87 326.6 308 61.0
Gorai.012G020500 Gossypium raimondii HOM05D005108 ORTHO05D006171 2.4e-87 326.2 336 58.3
Thecc.10G129800 Theobroma cacao HOM05D005108 ORTHO05D006171 2.4e-87 326.2 314 60.2
arahy.Tifrunner.gnm1.ann1.TCCJ6Y Arachis hypogaea HOM05D005108 ORTHO05D006171 3.1e-87 325.9 305 61.0
Eucgr.J00313 Eucalyptus grandis HOM05D005108 ORTHO05D006171 4.1e-87 325.5 314 60.2
Gohir.A05G398300 Gossypium hirsutum HOM05D005108 ORTHO05D006171 4.1e-87 325.5 336 58.0
Solyc01g096900.3 Solanum lycopersicum HOM05D005108 ORTHO05D006171 4.1e-87 325.5 308 60.1
Sopen01g040610 Solanum pennellii HOM05D005108 ORTHO05D006171 5.4e-87 325.1 308 60.1
FAN03G1083 Fragaria x ananassa HOM05D005108 ORTHO05D006171 7.0e-87 324.7 306 61.8
Duzib106G1854 Durio zibethinus HOM05D005108 ORTHO05D006171 9.2e-87 324.3 323 60.1
MD07G1054300 Malus domestica HOM05D005108 ORTHO05D006171 9.2e-87 324.3 311 60.5
Rhsim07G0072200 Rhododendron simsii HOM05D005108 ORTHO05D006171 1.2e-86 323.9 311 60.8
SGA_v2.0_scaffold244G44358 Striga asiatica HOM05D005108 ORTHO05D006171 1.2e-86 323.9 313 60.1
COL.COLO4_28907 Corchorus olitorius HOM05D005108 ORTHO05D006171 1.6e-86 323.6 311 60.1
CSS0042253 Camellia sinensis var. sinensis HOM05D005108 ORTHO05D006171 2.0e-86 323.2 337 57.9
CiPaw.01G118100 Carya illinoinensis HOM05D005108 ORTHO05D006171 2.0e-86 323.2 311 59.2
Medtr1g031690 Medicago truncatula HOM05D005108 ORTHO05D006171 2.0e-86 323.2 315 58.1
MELO3C011386.2 Cucumis melo HOM05D005108 ORTHO05D006171 2.7e-86 322.8 311 60.8
Potri.010G247000 Populus trichocarpa HOM05D005108 ORTHO05D006171 2.7e-86 322.8 315 59.4
ClCG08G010770 Citrullus lanatus HOM05D005108 ORTHO05D006171 7.8e-86 321.2 309 60.5
vmacro13787 Vaccinium macrocarpon HOM05D005108 ORTHO05D006171 1.3e-85 320.5 311 59.5
COL.COLO4_28912 Corchorus olitorius HOM05D005108 ORTHO05D006171 1.7e-85 320.1 317 59.3
Glyma.09G120200 Glycine max HOM05D005108 ORTHO05D006171 2.3e-85 319.7 315 59.4
Actinidia19615 Actinidia chinensis HOM05D005108 ORTHO05D006171 2.9e-85 319.3 311 59.8
AUR62014305 Chenopodium quinoa HOM05D005108 ORTHO05D006171 2.9e-85 319.3 323 56.7
HanXRQChr14g0446691 Helianthus annuus HOM05D005108 ORTHO05D006171 2.9e-85 319.3 311 59.8
Lalb_Chr10g0096011 Lupinus albus HOM05D005108 ORTHO05D006171 5.0e-85 318.5 316 58.2
TAR633G2703 Trochodendron aralioides HOM05D005108 ORTHO05D006171 5.0e-85 318.5 325 57.2
CsaV3_6G035790 Cucumis sativus L. HOM05D005108 ORTHO05D006171 6.6e-85 318.2 311 60.1
AUR62034097 Chenopodium quinoa HOM05D005108 ORTHO05D006171 1.9e-84 316.6 323 56.0
Sed0020738 Sechium edule HOM05D005108 ORTHO05D006171 1.9e-84 316.6 311 58.5
Psat6g044120 Pisum sativum HOM05D005108 ORTHO05D006171 3.3e-84 315.8 315 58.1
Sabra10G0192400 Salix brachista HOM05D005108 ORTHO05D006171 5.6e-84 315.1 312 58.3
MSTRG.20478 Avicennia marina HOM05D005108 ORTHO05D006171 1.2e-83 313.9 311 59.2
SalBow8G0010 Salvia bowleyana HOM05D005108 ORTHO05D006171 2.1e-83 313.2 311 56.9
SGA_v2.0_scaffold164G38128 Striga asiatica HOM05D005108 ORTHO05D006171 4.7e-83 312.0 305 58.0
Cc02_g32000 Coffea canephora HOM05D005108 ORTHO05D006171 6.1e-83 311.6 311 58.2
Cfa014950 Carpinus fangiana HOM05D005108 ORTHO05D006171 8.0e-83 311.2 311 58.5
Peaxi162Scf00647g00324 Petunia axillaris HOM05D005108 ORTHO05D006171 8.0e-83 311.2 340 55.0
Phvul.003G022300 Phaseolus vulgaris HOM05D005108 ORTHO05D006171 2.3e-82 309.7 313 56.9
EL10Ac4g08769 Beta vulgaris HOM05D005108 ORTHO05D006171 3.0e-82 309.3 311 56.6
Migut.B01161 Erythranthe guttata HOM05D005108 ORTHO05D006171 4.0e-82 308.9 311 58.5
Carub.0003s0992 Capsella rubella HOM05D005108 ORTHO05D006171 6.8e-82 308.1 330 57.0
DCAR_006625 Daucus carota HOM05D005108 ORTHO05D006171 6.8e-82 308.1 311 57.9
THA.LOC104826959 Tarenaya hassleriana HOM05D005108 ORTHO05D006171 8.9e-82 307.8 325 56.6
Thhalv10020005m.g Eutrema salsugineum HOM05D005108 ORTHO05D006171 2.6e-81 306.2 320 56.6
MBI19_g19123_MAGBIO Magnolia biondii HOM05D005108 ORTHO05D006171 2.6e-81 306.2 305 59.3
Lsat_1_v5_gn_2_64500 Lactuca sativa HOM05D005108 ORTHO05D006171 3.4e-81 305.8 321 55.8
AL3G22160 Arabidopsis lyrata HOM05D005108 ORTHO05D006171 4.4e-81 305.4 330 56.4
Oeu013050.3 Olea europaea HOM05D005108 ORTHO05D006171 1.3e-80 303.9 310 56.8
ECA238G1701 Erigeron canadensis HOM05D005108 ORTHO05D006171 2.2e-80 303.1 312 57.7
Glyma.07G166000 Glycine max HOM05D005108 ORTHO05D006171 6.4e-80 301.6 315 55.9
Sp3g09010 Schrenkiella parvula HOM05D005108 ORTHO05D006171 8.3e-80 301.2 313 58.1
CARHR085270 Cardamine hirsuta HOM05D005108 ORTHO05D006171 1.4e-79 300.4 313 57.8
Nn2g14646 Nelumbo nucifera HOM05D005108 ORTHO05D006171 1.4e-79 300.4 311 58.5
Haze_11639 Corylus avellana HOM05D005108 ORTHO05D006171 1.8e-79 300.1 341 52.8
AT3G10690 Arabidopsis thaliana HOM05D005108 ORTHO05D006171 2.4e-79 299.7 330 56.4
C03p44330 Brassica napus HOM05D005108 ORTHO05D006171 2.0e-78 296.6 323 56.3
BolC3t16703H Brassica oleracea HOM05D005108 ORTHO05D006171 2.0e-78 296.6 311 58.2
unitig_747.g21367 Utricularia gibba HOM05D005108 ORTHO05D006171 2.7e-78 296.2 312 56.7
A03p36700 Brassica napus HOM05D005108 ORTHO05D006171 3.5e-78 295.8 314 57.6
PSO541G5178 Papaver somniferum HOM05D005108 ORTHO05D006171 3.0e-77 292.7 310 53.9
Lj7A491G32 Lonicera japonica HOM05D005108 ORTHO05D006171 1.5e-76 290.4 270 62.2
PSO675G3383 Papaver somniferum HOM05D005108 ORTHO05D006171 5.6e-76 288.5 310 53.5
Nitab4.5_0001611g0100 Nicotiana tabacum HOM05D005108 ORTHO05D006171 1.6e-75 287.0 282 58.5
Aqoxy6G00412 Aquilegia oxysepala HOM05D005108 ORTHO05D006171 6.2e-75 285.0 315 54.0
BraA03t12833Z Brassica rapa HOM05D005108 ORTHO05D006171 1.2e-73 280.8 342 52.9
Zm00001eb212160 Zea mays HOM05D005108 ORTHO05D006171 2.2e-72 276.6 311 53.1
Os03g0812000 Oryza sativa ssp. japonica HOM05D005108 ORTHO05D006171 3.7e-72 275.8 311 53.4
Aa31LG3G3550 Aethionema arabicum HOM05D005108 ORTHO05D006171 4.1e-71 272.3 356 49.4
ATR0068G093 Amborella trichopoda HOM05D005108 ORTHO05D006171 7.0e-71 271.6 308 51.6
TWI15G0284 Tripterygium wilfordii HOM05D005108 ORTHO05D006171 3.5e-70 269.2 282 56.4
PGR044G2262 Punica granatum HOM05D005108 ORTHO05D006171 6.0e-70 268.5 271 57.9
SEGI_06230 Sequoiadendron giganteum HOM05D005108 ORTHO05D006171 1.7e-64 250.4 311 46.3
Hma1.2p1_0892F.1_g233240 Hydrangea macrophylla HOM05D005108 ORTHO05D006171 4.0e-58 229.2 235 55.7
RcHm_v2.0_Chr1g0331311 Rosa chinensis HOM05D005108 ORTHO05D006171 3.4e-57 226.1 191 67.5
Mapoly0010s0185 Marchantia polymorpha HOM05D005108 ORTHO05D006171 1.9e-47 193.7 313 38.7
Pp3c8_18800 Physcomitrium patens HOM05D005108 ORTHO05D006171 5.4e-47 192.2 311 39.5
SMO200G0101 Selaginella moellendorffii HOM05D005108 ORTHO05D006171 7.1e-47 191.8 313 37.4
Sc09g0004910 Simmondsia chinensis HOM05D005108 ORTHO05D006171 1.3e-32 144.4 162 50.0
CBR_g16891 Chara braunii HOM05D005108 ORTHO05D006171 1.6e-27 127.5 312 30.1
RcHm_v2.0_Chr1g0331301 Rosa chinensis HOM05D005108 ORTHO05D006171 1.5e-25 120.9 67 88.1
TWI15G0159 Tripterygium wilfordii HOM05D005108 ORTHO05D006171 7.1e-23 112.1 67 82.1
SHI21237 Sapria himalayana HOM05D005108 ORTHO05D006171 1.9e-20 104.0 88 61.4
Cc10_g09260 Coffea canephora HOM05D005108 ORTHO05D006171 6.9e-18 95.5 104 55.8
arahy.Tifrunner.gnm1.ann1.YBM0H9 Arachis hypogaea HOM05D005108 ORTHO05D006171 6.5e-16 89.0 104 49.0
TWI15G0962 Tripterygium wilfordii HOM05D005108 ORTHO05D006171 4.6e-14 82.8 74 58.1
MCO10G205 Micromonas commoda HOM05D005108 ORTHO05D006171 2.5e-12 77.0 315 25.1
HPP92_018990 Vanilla planifolia HOM05D005108 ORTHO05D006171 2.2e-08 63.9 126 39.7
C03p42230 Brassica napus HOM05D005108 ORTHO05D006171 2.9e-08 63.5 85 48.2


User provided reference genes

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