Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc52.135 Carica papaya HOM05D004774 ORTHO05D005514 1.1e-121 439.9 216 100.0
Thecc.01G266900 Theobroma cacao HOM05D004774 ORTHO05D005514 2.6e-89 332.4 215 74.0
CiPaw.06G137100 Carya illinoinensis HOM05D004774 ORTHO05D005514 2.0e-86 322.8 202 73.3
Duzib138G0586 Durio zibethinus HOM05D004774 ORTHO05D005514 1.0e-85 320.5 208 73.6
QL08p045287 Quercus lobata HOM05D004774 ORTHO05D005514 6.5e-85 317.8 201 72.6
Gohir.A07G209300 Gossypium hirsutum HOM05D004774 ORTHO05D005514 3.6e-83 312.0 208 71.6
Dinv40162 Davidia involucrata HOM05D004774 ORTHO05D005514 6.1e-83 311.2 192 75.0
Gorai.001G243200 Gossypium raimondii HOM05D004774 ORTHO05D005514 6.1e-83 311.2 208 71.2
TAR636G0805 Trochodendron aralioides HOM05D004774 ORTHO05D005514 2.3e-82 309.3 186 75.3
Duzib211G0067 Durio zibethinus HOM05D004774 ORTHO05D005514 5.2e-82 308.1 208 70.7
Gohir.D07G215400 Gossypium hirsutum HOM05D004774 ORTHO05D005514 6.8e-82 307.8 208 70.2
GSVIVG01000730001 Vitis vinifera HOM05D004774 ORTHO05D005514 6.8e-82 307.8 192 74.5
GSVIVG01011075001 Vitis vinifera HOM05D004774 ORTHO05D005514 6.8e-82 307.8 192 73.4
TWI12G1255 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 8.8e-82 307.4 200 71.0
Duzib211G0109 Durio zibethinus HOM05D004774 ORTHO05D005514 4.4e-81 305.1 208 70.2
THA.LOC104815831 Tarenaya hassleriana HOM05D004774 ORTHO05D005514 1.3e-80 303.5 198 70.7
TWI18G0081 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 2.8e-80 302.4 200 70.5
Dinv22475 Davidia involucrata HOM05D004774 ORTHO05D005514 4.9e-80 301.6 192 73.4
CANSAT35G0005 Cannabis sativa HOM05D004774 ORTHO05D005514 1.4e-79 300.1 199 68.8
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 4.5e-78 295.0 203 66.0
Cfa005024 Carpinus fangiana HOM05D004774 ORTHO05D005514 4.5e-78 295.0 195 70.8
Prupe.2G103200 Prunus persica HOM05D004774 ORTHO05D005514 7.7e-78 294.3 202 70.3
Atru.chr5.1584 Acer truncatum HOM05D004774 ORTHO05D005514 1.7e-77 293.1 192 72.9
Nn4g23666 Nelumbo nucifera HOM05D004774 ORTHO05D005514 1.1e-76 290.4 192 69.3
Cc01_g18810 Coffea canephora HOM05D004774 ORTHO05D005514 9.5e-76 287.3 192 67.7
MD08G1227600 Malus domestica HOM05D004774 ORTHO05D005514 9.5e-76 287.3 204 66.7
COL.COLO4_05101 Corchorus olitorius HOM05D004774 ORTHO05D005514 1.2e-75 287.0 211 64.9
Nitab4.5_0003289g0060 Nicotiana tabacum HOM05D004774 ORTHO05D005514 2.1e-75 286.2 193 69.4
CAN.G1190.29 Capsicum annuum HOM05D004774 ORTHO05D005514 1.4e-74 283.5 192 67.2
Sopen07g002340 Solanum pennellii HOM05D004774 ORTHO05D005514 1.8e-74 283.1 192 67.7
Manes.01G201400 Manihot esculenta HOM05D004774 ORTHO05D005514 4.0e-74 282.0 203 68.5
Thhalv10028967m.g Eutrema salsugineum HOM05D004774 ORTHO05D005514 6.8e-74 281.2 202 63.4
CSS0049587 Camellia sinensis var. sinensis HOM05D004774 ORTHO05D005514 1.5e-73 280.0 235 58.7
AL1G16800 Arabidopsis lyrata HOM05D004774 ORTHO05D005514 2.0e-73 279.6 202 63.4
Carub.0001s0611 Capsella rubella HOM05D004774 ORTHO05D005514 9.8e-73 277.3 199 62.8
Solyc07g006240.4 Solanum lycopersicum HOM05D004774 ORTHO05D005514 2.2e-72 276.2 198 65.7
Aqoxy7G03988 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 4.9e-72 275.0 192 66.7
Aqoxy1G01668 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 8.3e-72 274.2 192 66.7
Lsat_1_v5_gn_5_176641 Lactuca sativa HOM05D004774 ORTHO05D005514 8.3e-72 274.2 193 67.4
Aqoxy4G03157 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.1e-71 273.9 192 66.7
Sp1g05530 Schrenkiella parvula HOM05D004774 ORTHO05D005514 1.4e-71 273.5 202 62.4
PSO170G5180 Papaver somniferum HOM05D004774 ORTHO05D005514 1.8e-71 273.1 192 68.2
MSTRG.18290 Avicennia marina HOM05D004774 ORTHO05D005514 4.1e-71 271.9 202 63.9
Ciclev10023915m.g Citrus clementina HOM05D004774 ORTHO05D005514 4.1e-71 271.9 177 71.8
BraA08t35495Z Brassica rapa HOM05D004774 ORTHO05D005514 7.0e-71 271.2 194 63.9
CARHR006490 Cardamine hirsuta HOM05D004774 ORTHO05D005514 7.0e-71 271.2 202 61.9
Hma1.2p1_1029F.1_g249620 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 7.0e-71 271.2 226 60.2
Hma1.2p1_1029F.1_g249641 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 7.0e-71 271.2 226 60.2
C08p02690 Brassica napus HOM05D004774 ORTHO05D005514 2.0e-70 269.6 202 61.9
BolC8t47065H Brassica oleracea HOM05D004774 ORTHO05D005514 2.0e-70 269.6 202 61.9
Lj4g0014477 Lotus japonicus HOM05D004774 ORTHO05D005514 2.0e-70 269.6 209 62.7
ClCG09G004860 Citrullus lanatus HOM05D004774 ORTHO05D005514 2.7e-70 269.2 216 59.7
A08p35880 Brassica napus HOM05D004774 ORTHO05D005514 3.5e-70 268.9 194 64.4
PSO017G6900 Papaver somniferum HOM05D004774 ORTHO05D005514 5.9e-70 268.1 192 66.1
Potri.002G044500 Populus trichocarpa HOM05D004774 ORTHO05D005514 3.0e-69 265.8 193 65.3
Ca_26554_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 5.0e-69 265.0 196 66.3
EL10Ac3g05825 Beta vulgaris HOM05D004774 ORTHO05D005514 1.1e-68 263.8 192 63.0
Migut.D00377 Erythranthe guttata HOM05D004774 ORTHO05D005514 1.1e-68 263.8 199 66.3
vmacro02628 Vaccinium macrocarpon HOM05D004774 ORTHO05D005514 1.5e-68 263.5 232 59.9
Phvul.010G020150 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 5.6e-68 261.5 216 61.1
Phvul.010G020200 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 5.6e-68 261.5 216 61.1
Lalb_Chr17g0348441 Lupinus albus HOM05D004774 ORTHO05D005514 9.5e-68 260.8 199 62.8
RcHm_v2.0_Chr5g0063451 Rosa chinensis HOM05D004774 ORTHO05D005514 9.5e-68 260.8 197 65.5
CsaV3_7G030220 Cucumis sativus L. HOM05D004774 ORTHO05D005514 2.8e-67 259.2 209 59.8
Nitab4.5_0001427g0080 Nicotiana tabacum HOM05D004774 ORTHO05D005514 2.8e-67 259.2 178 68.0
Rhsim13G0031100 Rhododendron simsii HOM05D004774 ORTHO05D005514 3.6e-67 258.8 238 57.6
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 6.2e-67 258.1 216 60.6
Psat3g097920 Pisum sativum HOM05D004774 ORTHO05D005514 5.2e-66 255.0 195 63.1
Sed0022653 Sechium edule HOM05D004774 ORTHO05D005514 5.2e-66 255.0 224 59.8
BolC8t52628H Brassica oleracea HOM05D004774 ORTHO05D005514 6.8e-66 254.6 197 60.4
AUR62002186 Chenopodium quinoa HOM05D004774 ORTHO05D005514 1.2e-65 253.8 192 61.5
C08p51000 Brassica napus HOM05D004774 ORTHO05D005514 4.4e-65 251.9 203 58.6
A09p66780 Brassica napus HOM05D004774 ORTHO05D005514 5.8e-65 251.5 198 59.1
Eucgr.B01492 Eucalyptus grandis HOM05D004774 ORTHO05D005514 7.5e-65 251.1 192 65.6
MELO3C023634.2 Cucumis melo HOM05D004774 ORTHO05D005514 1.7e-64 250.0 215 57.7
FvH4_1g22880 Fragaria vesca HOM05D004774 ORTHO05D005514 4.9e-64 248.4 197 63.5
SGA_v2.0_scaffold138G35272 Striga asiatica HOM05D004774 ORTHO05D005514 1.4e-63 246.9 221 56.1
Glyma.03G218500 Glycine max HOM05D004774 ORTHO05D005514 2.4e-63 246.1 207 59.4
AT1G06790 Arabidopsis thaliana HOM05D004774 ORTHO05D005514 3.2e-63 245.7 182 62.6
PGSC0003DMG400011166 Solanum tuberosum HOM05D004774 ORTHO05D005514 3.2e-63 245.7 184 64.1
FAN19G2773 Fragaria x ananassa HOM05D004774 ORTHO05D005514 7.0e-63 244.6 197 62.9
Medtr8g072680 Medicago truncatula HOM05D004774 ORTHO05D005514 2.7e-62 242.7 195 61.0
Glyma.19G215300 Glycine max HOM05D004774 ORTHO05D005514 6.0e-62 241.5 206 60.2
BraA09t42016Z Brassica rapa HOM05D004774 ORTHO05D005514 7.8e-62 241.1 227 51.5
DCAR_002682 Daucus carota HOM05D004774 ORTHO05D005514 3.0e-61 239.2 175 63.4
FAN23G2064 Fragaria x ananassa HOM05D004774 ORTHO05D005514 8.6e-61 237.7 215 57.7
ECA247G2354 Erigeron canadensis HOM05D002220 ORTHO05D008182 3.3e-60 235.7 191 62.3
Sabra02G0035700 Salix brachista HOM05D004774 ORTHO05D005514 4.3e-60 235.3 178 64.0
BcaC07g42048 Brassica carinata HOM05D004774 ORTHO05D005514 9.5e-60 234.2 197 57.4
AUR62015525 Chenopodium quinoa HOM05D004774 ORTHO05D005514 1.2e-59 233.8 178 62.9
MBI04_g06856_MAGBIO Magnolia biondii HOM05D004774 ORTHO05D005514 6.2e-59 231.5 193 58.0
Peaxi162Scf00934g00135 Petunia axillaris HOM05D004774 ORTHO05D005514 8.1e-59 231.1 192 57.8
VMungo1309G2525 Vigna mungo HOM05D004774 ORTHO05D005514 2.0e-57 226.5 191 60.7
SMO012G0037 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 1.3e-56 223.8 192 56.2
Sc04g0000740 Simmondsia chinensis HOM05D004774 ORTHO05D005514 3.7e-56 222.2 192 55.7
Pp3c7_17850 Physcomitrium patens HOM05D004774 ORTHO05D005514 1.9e-55 219.9 193 51.3
SEGI_34955 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 1.9e-55 219.9 194 51.5
HPP92_027004 Vanilla planifolia HOM05D004774 ORTHO05D005514 3.2e-55 219.2 194 55.2
HPP92_015388 Vanilla planifolia HOM05D004774 ORTHO05D005514 5.4e-55 218.4 194 54.6
Mapoly0050s0102 Marchantia polymorpha HOM05D004774 ORTHO05D005514 1.6e-54 216.9 192 49.5
Os07g0477000 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 8.6e-53 211.1 193 53.9
FAN26G2874 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.5e-52 210.3 177 61.6
SGA_v2.0_scaffold43G16236 Striga asiatica HOM05D004774 ORTHO05D005514 2.5e-52 209.5 172 61.0
unitig_0.g1128 Utricularia gibba HOM05D004774 ORTHO05D005514 1.1e-50 204.1 259 42.1
AagrBONN_evm.TU.Sc2ySwM_344.4376 Anthoceros agrestis HOM05D004774 ORTHO05D005514 5.2e-50 201.8 194 46.9
PSO339G5528 Papaver somniferum HOM05D004774 ORTHO05D005514 1.5e-49 200.3 156 65.4
Ca_27275_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 8.4e-48 194.5 156 62.8
Lj4A469T41 Lonicera japonica HOM05D004774 ORTHO05D005514 1.9e-47 193.4 135 72.6
Cre12.g538400 Chlamydomonas reinhardtii HOM05D004774 ORTHO05D005514 1.5e-44 183.7 204 45.6
Nn1g02575 Nelumbo nucifera HOM05D004774 ORTHO05D005514 2.5e-44 183.0 120 62.5
SHI09938 Sapria himalayana HOM05D004774 ORTHO05D000023 2.4e-42 176.4 133 65.4
SMO298G0040 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 1.1e-39 167.5 192 47.9
BcaC07g42538 Brassica carinata HOM05D004774 ORTHO05D005514 2.7e-38 162.9 127 59.8
MCO09G483 Micromonas commoda HOM05D004774 ORTHO05D005514 1.3e-37 160.6 205 40.5
CDE07G1842 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 3.9e-37 159.1 192 45.8
PGR119G0353 Punica granatum HOM05D004774 ORTHO05D005514 6.6e-37 158.3 130 57.7
Aqoxy7G03987 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 9.0e-34 147.9 98 71.4
CDE07G0321 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 9.0e-34 147.9 200 41.5
FAN11G3419 Fragaria x ananassa HOM05D004774 ORTHO05D005514 3.8e-32 142.5 140 56.4
Zm00001eb319960 Zea mays HOM05D004774 ORTHO05D005514 3.8e-32 142.5 114 59.6
HanXRQChr14g0454071 Helianthus annuus HOM05D004774 ORTHO05D005514 1.1e-31 141.0 122 50.0
TPR.G27929 Trifolium pratense HOM05D004774 ORTHO05D005514 4.2e-31 139.0 104 68.3
arahy.Tifrunner.gnm1.ann1.KW6T12 Arachis hypogaea HOM05D004774 ORTHO05D005514 1.6e-30 137.1 94 73.4
arahy.Tifrunner.gnm1.ann1.SKV00U Arachis hypogaea HOM05D004774 ORTHO05D005514 2.7e-30 136.3 94 61.7
FAN21G2916 Fragaria x ananassa HOM05D004774 ORTHO05D005514 2.5e-28 129.8 101 66.3
ATR0665G644 Amborella trichopoda HOM05D004774 ORTHO05D005514 4.8e-27 125.6 98 61.2
GSVIVG01021945001 Vitis vinifera HOM05D004774 ORTHO05D005514 3.1e-26 122.9 98 66.3
Prupe.7G016800 Prunus persica HOM05D004774 ORTHO05D005514 1.7e-24 117.1 105 55.2
Haze_02362 Corylus avellana HOM05D004774 ORTHO05D005514 4.2e-23 112.5 71 77.5
SEGI_28935 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 3.5e-22 109.4 102 46.1
GSVIVG01021951001 Vitis vinifera HOM05D004774 ORTHO05D005514 3.5e-22 109.4 109 56.9
Haze_02361 Corylus avellana HOM05D004774 ORTHO05D005514 4.6e-22 109.0 69 66.7
GSVIVG01000731001 Vitis vinifera HOM05D004774 ORTHO05D005514 5.1e-21 105.5 75 72.0
TPR.G27925 Trifolium pratense HOM05D004774 ORTHO05D005514 2.5e-20 103.2 79 54.4
TPR.G27610 Trifolium pratense HOM05D004774 ORTHO05D005514 2.8e-19 99.8 68 73.5
GSVIVG01000732001 Vitis vinifera HOM05D004774 ORTHO05D005514 8.1e-19 98.2 68 61.8
FvH4_3g35340 Fragaria vesca HOM05D004774 ORTHO05D005514 4.0e-18 95.9 102 52.0
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 7.6e-17 91.7 70 62.9
TPR.G26057 Trifolium pratense HOM05D004774 ORTHO05D005514 2.2e-16 90.1 63 68.3
Ah.11g042480 Amaranthus hybridus HOM05D004774 ORTHO05D005514 3.8e-16 89.4 69 58.0
GSVIVG01000736001 Vitis vinifera HOM05D004774 ORTHO05D005514 2.1e-14 83.6 47 70.2
BolC8t46832H Brassica oleracea HOM05D004774 ORTHO05D005514 3.3e-12 76.3 48 64.6
MD02G1234500 Malus domestica HOM05D004774 ORTHO05D005514 8.2e-11 71.6 40 80.0
CBR_g31683 Chara braunii HOM05D004774 ORTHO05D005514 3.1e-10 69.7 117 35.0
BolC1t02432H Brassica oleracea HOM05D004774 ORTHO05D033846 6.9e-10 68.6 49 61.2
C08p41270 Brassica napus HOM05D004774 ORTHO05D005514 9.0e-10 68.2 49 61.2
Lj4A469T40 Lonicera japonica HOM05D004774 ORTHO05D005514 9.0e-10 68.2 43 67.4
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 1.0e-08 64.7 79 38.0
A03p16490 Brassica napus HOM05D037327 ORTHO05D005514 1.7e-08 63.9 35 71.4
FAN28G1675 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.7e-08 63.9 60 58.3
GSVIVG01018600001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.7e-08 63.9 60 46.7
Os03g0609200 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 1.9e-07 60.5 84 34.5
Lalb_Chr23g0275811 Lupinus albus HOM05D004774 ORTHO05D005514 3.2e-07 59.7 108 40.7
GSVIVG01034583001 Vitis vinifera HOM05D004774 ORTHO05D005514 7.2e-07 58.5 52 50.0


User provided reference genes

Program Settings