Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc485.5 Carica papaya HOM05D006016 ORTHO05D007553 2.7e-127 458.8 249 100.0
Cfa006104 Carpinus fangiana HOM05D006016 ORTHO05D007553 3.8e-113 411.8 249 88.4
Haze_04746 Corylus avellana HOM05D006016 ORTHO05D007553 5.0e-113 411.4 249 88.0
Prupe.8G244900 Prunus persica HOM05D006016 ORTHO05D007553 4.2e-112 408.3 249 85.9
PGR044G1280 Punica granatum HOM05D006016 ORTHO05D007553 7.2e-112 407.5 249 86.7
QL12p022630 Quercus lobata HOM05D006016 ORTHO05D007553 7.2e-112 407.5 249 87.6
GSVIVG01011095001 Vitis vinifera HOM05D006016 ORTHO05D007553 9.5e-112 407.1 249 87.1
Duzib138G0992 Durio zibethinus HOM05D006016 ORTHO05D007553 8.0e-111 404.1 249 86.3
MD03G1268900 Malus domestica HOM05D006016 ORTHO05D007553 3.0e-110 402.1 249 85.9
TAR633G0970 Trochodendron aralioides HOM05D006016 ORTHO05D007553 4.0e-110 401.7 249 86.7
Nn1g02145 Nelumbo nucifera HOM05D006016 ORTHO05D007553 6.8e-110 401.0 249 84.3
Thecc.01G283800 Theobroma cacao HOM05D006016 ORTHO05D007553 8.8e-110 400.6 249 86.3
MD11G1289700 Malus domestica HOM05D006016 ORTHO05D007553 1.2e-109 400.2 249 85.1
Eucgr.K03395 Eucalyptus grandis HOM05D006016 ORTHO05D007553 3.4e-109 398.7 249 86.3
Aqoxy2G03243 Aquilegia oxysepala HOM05D006016 ORTHO05D007553 5.7e-109 397.9 249 79.5
Oeu011169.1 Olea europaea HOM05D006016 ORTHO05D007553 7.5e-109 397.5 249 80.3
Gohir.A08G069800 Gossypium hirsutum HOM05D006016 ORTHO05D007553 9.8e-109 397.1 249 83.9
Gorai.004G083400 Gossypium raimondii HOM05D006016 ORTHO05D007553 4.9e-108 394.8 254 83.5
CiPaw.07G094500 Carya illinoinensis HOM05D006016 ORTHO05D007553 1.1e-107 393.7 249 85.1
COL.COLO4_09142 Corchorus olitorius HOM05D006016 ORTHO05D007553 1.1e-107 393.7 250 83.6
Eucgr.K03393 Eucalyptus grandis HOM05D006016 ORTHO05D007553 1.8e-107 392.9 249 85.9
CANSAT80G0718 Cannabis sativa HOM05D006016 ORTHO05D007553 4.1e-107 391.7 246 84.6
Hma1.2p1_0628F.1_g191900 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 5.4e-107 391.3 248 83.9
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 1.2e-106 390.2 249 82.7
EL10Ac4g09090 Beta vulgaris HOM05D006016 ORTHO05D007553 2.7e-106 389.0 248 79.0
FAN03G2867 Fragaria x ananassa HOM05D006016 ORTHO05D007553 3.5e-106 388.7 249 83.1
ClCG07G000070 Citrullus lanatus HOM05D006016 ORTHO05D007553 5.9e-106 387.9 253 83.8
Manes.01G210000 Manihot esculenta HOM05D006016 ORTHO05D007553 7.8e-106 387.5 249 82.3
RcHm_v2.0_Chr1g0321311 Rosa chinensis HOM05D006016 ORTHO05D007553 7.8e-106 387.5 249 83.9
CSS0041846 Camellia sinensis var. sinensis HOM05D006016 ORTHO05D007553 3.8e-105 385.2 249 81.1
AUR62032753 Chenopodium quinoa HOM05D006016 ORTHO05D007553 3.8e-105 385.2 247 78.5
Ciclev10020923m.g Citrus clementina HOM05D006016 ORTHO05D007553 5.0e-105 384.8 249 82.7
Hund06953 Selenicereus undatus HOM05D006016 ORTHO05D007553 5.0e-105 384.8 249 82.7
SGA_v2.0_scaffold1G00448 Striga asiatica HOM05D006016 ORTHO05D007553 5.0e-105 384.8 249 81.1
MSTRG.18215 Avicennia marina HOM05D006016 ORTHO05D007553 6.6e-105 384.4 249 82.3
Potri.014G138500 Populus trichocarpa HOM05D006016 ORTHO05D007553 6.6e-105 384.4 249 78.7
FvH4_7g02610 Fragaria vesca HOM05D006016 ORTHO05D007553 8.6e-105 384.0 249 82.7
AUR62004906 Chenopodium quinoa HOM05D006016 ORTHO05D007553 1.5e-104 383.3 249 77.5
DCAR_002754 Daucus carota HOM05D006016 ORTHO05D007553 4.3e-104 381.7 249 81.9
Sed0013000 Sechium edule HOM05D006016 ORTHO05D007553 4.3e-104 381.7 251 83.3
Nitab4.5_0006180g0080 Nicotiana tabacum HOM05D006016 ORTHO05D007553 5.6e-104 381.3 250 79.2
CARHR124900 Cardamine hirsuta HOM05D006016 ORTHO05D007553 1.6e-103 379.8 251 81.3
Nitab4.5_0007392g0030 Nicotiana tabacum HOM05D006016 ORTHO05D007553 1.6e-103 379.8 250 77.6
BcaB02g08738 Brassica carinata HOM05D006016 ORTHO05D007553 3.6e-103 378.6 249 81.9
Cc02_g34480 Coffea canephora HOM05D006016 ORTHO05D007553 1.4e-102 376.7 251 79.7
PGSC0003DMG400000944 Solanum tuberosum HOM05D006016 ORTHO05D007553 1.4e-102 376.7 250 82.0
BraA05t18997Z Brassica rapa HOM05D006016 ORTHO05D007553 1.8e-102 376.3 250 81.6
Carub.0004s3083 Capsella rubella HOM05D006016 ORTHO05D007553 2.3e-102 375.9 253 79.4
Ca_09774_v3 Cicer arietinum L. HOM05D006016 ORTHO05D007553 3.0e-102 375.6 253 81.8
PSO170G1401 Papaver somniferum HOM05D006016 ORTHO05D007553 5.2e-102 374.8 250 76.4
PSO407G0301 Papaver somniferum HOM05D006016 ORTHO05D007553 5.2e-102 374.8 250 76.4
Solyc09g064790.3 Solanum lycopersicum HOM05D006016 ORTHO05D007553 5.2e-102 374.8 250 81.6
MELO3C014346.2 Cucumis melo HOM05D006016 ORTHO05D007553 6.8e-102 374.4 253 79.8
Sopen09g026490 Solanum pennellii HOM05D006016 ORTHO05D007553 6.8e-102 374.4 250 81.6
Thhalv10001558m.g Eutrema salsugineum HOM05D006016 ORTHO05D007553 8.9e-102 374.0 253 79.8
FAN01G1545 Fragaria x ananassa HOM05D006016 ORTHO05D007553 3.4e-101 372.1 243 81.5
Atru.chr5.1361 Acer truncatum HOM05D006016 ORTHO05D007553 4.4e-101 371.7 249 80.7
Sp4g30040 Schrenkiella parvula HOM05D006016 ORTHO05D007553 2.9e-100 369.0 253 79.1
CAN.G962.6 Capsicum annuum HOM05D006016 ORTHO05D007553 4.9e-100 368.2 248 79.8
CDE01G0302 Ceratophyllum demersum HOM05D006016 ORTHO05D007553 8.3e-100 367.5 249 76.7
Migut.D00263 Erythranthe guttata HOM05D006016 ORTHO05D007553 1.8e-99 366.3 246 76.4
arahy.Tifrunner.gnm1.ann1.NXI6YJ Arachis hypogaea HOM05D006016 ORTHO05D007553 5.4e-99 364.8 252 77.4
ATR0626G088 Amborella trichopoda HOM05D006016 ORTHO05D007553 9.2e-99 364.0 249 76.7
Glyma.10G024400 Glycine max HOM05D006016 ORTHO05D007553 9.2e-99 364.0 252 77.0
arahy.Tifrunner.gnm1.ann1.Q6PPUG Arachis hypogaea HOM05D006016 ORTHO05D007553 1.2e-98 363.6 252 76.2
Peaxi162Scf00104g00220 Petunia axillaris HOM05D006016 ORTHO05D007553 1.6e-98 363.2 250 76.0
A05p00010 Brassica napus HOM05D006016 ORTHO05D007553 2.7e-98 362.5 241 82.2
Lj5g0023557 Lotus japonicus HOM05D006016 ORTHO05D007553 2.7e-98 362.5 226 83.6
Aa31LG4G3290 Aethionema arabicum HOM05D006016 ORTHO05D007553 4.6e-98 361.7 253 76.7
AL4G47720 Arabidopsis lyrata HOM05D006016 ORTHO05D007553 4.6e-98 361.7 253 78.3
TPR.G1544 Trifolium pratense HOM05D000563 ORTHO05D000536 4.6e-98 361.7 251 80.9
BolC4t21679H Brassica oleracea HOM05D006016 ORTHO05D007553 1.0e-97 360.5 269 75.5
BolSC55t61222H Brassica oleracea HOM05D006016 ORTHO05D007553 1.0e-97 360.5 269 73.6
Lj2C1178T3 Lonicera japonica HOM05D006016 ORTHO05D007553 1.0e-97 360.5 225 81.3
THA.LOC104823056 Tarenaya hassleriana HOM05D006016 ORTHO05D007553 1.0e-97 360.5 250 79.2
BolSC55t61226H Brassica oleracea HOM05D006016 ORTHO05D007553 3.0e-97 359.0 269 75.1
Lalb_Chr21g0306561 Lupinus albus HOM05D006016 ORTHO05D007553 3.0e-97 359.0 252 79.0
Medtr1g072640 Medicago truncatula HOM05D006016 ORTHO05D007553 5.0e-97 358.2 253 78.7
AT2G48120 Arabidopsis thaliana HOM05D006016 ORTHO05D007553 4.3e-96 355.1 228 79.4
BNapus_Darmor_BZH_scaffold_188p00120 Brassica napus HOM05D006016 ORTHO05D007553 1.6e-95 353.2 225 80.4
BNapus_Darmor_BZH_scaffold_188p00130 Brassica napus HOM05D006016 ORTHO05D007553 1.6e-95 353.2 225 80.4
HanXRQChr01g0002401 Helianthus annuus HOM05D006016 ORTHO05D007553 3.1e-94 349.0 250 71.6
HPP92_025128 Vanilla planifolia HOM05D006016 ORTHO05D007553 2.0e-93 346.3 249 73.5
CsaV3_6G036870 Cucumis sativus L. HOM05D006016 ORTHO05D007553 2.6e-93 345.9 253 75.5
SalBow4G2498 Salvia bowleyana HOM05D006016 ORTHO05D007553 4.4e-93 345.1 239 75.7
unitig_61.g26325 Utricularia gibba HOM05D006016 ORTHO05D007553 5.8e-93 344.7 250 73.2
Lsat_1_v5_gn_5_187441 Lactuca sativa HOM05D006016 ORTHO05D007553 2.9e-92 342.4 252 71.8
BcaC02g12797 Brassica carinata HOM05D006016 ORTHO05D007553 4.9e-92 341.7 250 77.2
TWI14G0073 Tripterygium wilfordii HOM05D006016 ORTHO05D007553 8.3e-92 340.9 249 75.5
arahy.Tifrunner.gnm1.ann1.95RMVD Arachis hypogaea HOM05D006016 ORTHO05D007553 1.1e-91 340.5 241 75.1
ECA248G0902 Erigeron canadensis HOM05D006016 ORTHO05D007553 9.2e-91 337.4 232 75.4
Rhsim01G0276200 Rhododendron simsii HOM05D006016 ORTHO05D007553 1.6e-90 336.7 341 57.2
Phvul.007G169400 Phaseolus vulgaris HOM05D006016 ORTHO05D007553 3.3e-88 328.9 252 74.2
Os05g0393400 Oryza sativa ssp. japonica HOM05D006016 ORTHO05D007553 7.3e-88 327.8 249 65.9
Psat6g138080 Pisum sativum HOM05D006016 ORTHO05D007553 2.1e-87 326.2 228 76.3
Zm00001eb287380 Zea mays HOM05D006016 ORTHO05D007553 2.1e-87 326.2 249 66.7
Sabra14G0104500 Salix brachista HOM05D006016 ORTHO05D007553 2.3e-86 322.8 230 73.5
Dinv32962 Davidia involucrata HOM05D006016 ORTHO05D007553 1.2e-85 320.5 185 86.5
Gohir.D08G079100 Gossypium hirsutum HOM05D006016 ORTHO05D007553 1.3e-84 317.0 249 72.3
BcaC02g12566 Brassica carinata HOM05D006016 ORTHO05D007553 3.0e-81 305.8 251 71.7
vmacro14936 Vaccinium macrocarpon HOM05D006016 ORTHO05D007553 6.0e-74 281.6 185 77.3
SEGI_37912 Sequoiadendron giganteum HOM05D006016 ORTHO05D007553 2.3e-73 279.6 249 60.6
Hma1.2p1_0628F.1_g191890 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 3.9e-73 278.9 170 86.5
QL10p008835 Quercus lobata HOM05D006016 ORTHO05D007553 4.3e-72 275.4 165 87.9
arahy.Tifrunner.gnm1.ann1.9IJ3BZ Arachis hypogaea HOM05D006016 ORTHO05D007553 2.1e-71 273.1 249 63.1
Actinidia21099 Actinidia chinensis HOM05D006016 ORTHO05D007553 9.9e-69 264.2 260 59.2
BolSC55t61219H Brassica oleracea HOM05D006016 ORTHO05D007553 2.3e-65 253.1 158 87.3
SMO360G0019 Selaginella moellendorffii HOM05D006016 ORTHO05D007553 6.9e-62 241.5 251 52.2
BolSC55t61223H Brassica oleracea HOM05D006016 ORTHO05D007553 3.8e-60 235.7 156 83.3
Mapoly0059s0024 Marchantia polymorpha HOM05D006016 ORTHO05D007553 4.2e-59 232.3 248 51.2
Pp3c5_15510 Physcomitrium patens HOM05D006016 ORTHO05D007553 1.8e-57 226.9 249 53.0
BraA05t18995Z Brassica rapa HOM05D006016 ORTHO05D007553 9.0e-46 188.0 128 71.9
Lj9C654T2 Lonicera japonica HOM05D006016 ORTHO05D007553 3.8e-44 182.6 171 57.9
AagrBONN_evm.TU.Sc2ySwM_228.5509 Anthoceros agrestis HOM05D006016 ORTHO05D007553 2.1e-42 176.8 171 50.3
BNapus_Darmor_BZH_scaffold_188p00100 Brassica napus HOM05D006016 ORTHO05D007553 3.5e-42 176.0 125 70.4
Glyma.02G149402 Glycine max HOM05D006016 ORTHO05D007553 1.9e-40 170.2 116 83.6
QL09p051040 Quercus lobata HOM05D006016 ORTHO05D007553 3.1e-30 136.3 120 61.7
Oeu001432.1 Olea europaea HOM05D006016 ORTHO05D007553 6.9e-30 135.2 98 71.4
BNapus_Darmor_BZH_scaffold_188p00090 Brassica napus HOM05D001484 ORTHO05D007553 1.4e-27 127.5 88 87.5
CBR_g23747 Chara braunii HOM05D006016 ORTHO05D007553 4.7e-26 122.5 238 36.6
Actinidia24878 Actinidia chinensis HOM05D006016 ORTHO05D007553 1.5e-24 117.5 128 54.7
AUR62004907 Chenopodium quinoa HOM05D006016 ORTHO05D007553 1.3e-23 114.4 78 75.6
QL09p050526 Quercus lobata HOM05D006016 ORTHO05D337571 7.0e-22 108.6 101 59.4
BcaC08g43234 Brassica carinata HOM05D006016 ORTHO05D007553 8.0e-18 95.1 81 58.0
MBI04_g32261_MAGBIO Magnolia biondii HOM05D006016 ORTHO05D007553 1.1e-14 84.7 72 63.9
Dinv13370 Davidia involucrata HOM05D006016 ORTHO05D007553 1.1e-11 74.7 65 64.6
Dinv01676 Davidia involucrata HOM05D006016 ORTHO05D007553 4.7e-10 69.3 65 63.1
QL09p050966 Quercus lobata HOM05D001484 ORTHO05D001564 1.4e-09 67.8 35 77.1
Dinv16891 Davidia involucrata HOM05D006016 ORTHO05D007553 1.8e-09 67.4 65 66.2
Lj9C654T3 Lonicera japonica HOM05D006016 ORTHO05D007553 4.4e-08 62.8 47 72.3
BolC6t35694H Brassica oleracea HOM05D006016 ORTHO05D007553 1.3e-07 61.2 46 71.7
Medtr1g072620 Medicago truncatula HOM05D006016 ORTHO05D007553 9.1e-06 55.1 49 59.2


User provided reference genes

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