Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc43.154 Carica papaya HOM05D004970 ORTHO05D005665 6.6e-160 567.4 302 100.0
Atru.chr12.1813 Acer truncatum HOM05D004970 ORTHO05D005665 2.0e-87 326.6 510 44.3
Haze_00346 Corylus avellana HOM05D004970 ORTHO05D005665 8.3e-86 321.2 509 43.8
Thecc.05G227300 Theobroma cacao HOM05D004970 ORTHO05D005665 1.3e-83 313.9 508 43.9
COL.COLO4_08410 Corchorus olitorius HOM05D004970 ORTHO05D005665 5.0e-83 312.0 508 42.9
Manes.09G130800 Manihot esculenta HOM05D004970 ORTHO05D005665 8.6e-83 311.2 509 42.8
Duzib177G0786 Durio zibethinus HOM05D004970 ORTHO05D005665 1.5e-82 310.5 508 42.7
Gohir.A11G221400 Gossypium hirsutum HOM05D004970 ORTHO05D005665 1.5e-79 300.4 508 41.3
Duzib128G2026 Durio zibethinus HOM05D004970 ORTHO05D005665 2.6e-79 299.7 508 41.5
Manes.08G159000 Manihot esculenta HOM05D004970 ORTHO05D005665 3.4e-79 299.3 509 41.7
Cfa016111 Carpinus fangiana HOM05D004970 ORTHO05D005665 5.7e-79 298.5 502 41.8
CiPaw.06G037800 Carya illinoinensis HOM05D004970 ORTHO05D005665 7.5e-79 298.1 509 40.5
CiPaw.05G210700 Carya illinoinensis HOM05D004970 ORTHO05D005665 1.7e-78 297.0 510 40.6
Gohir.D11G234800 Gossypium hirsutum HOM05D004970 ORTHO05D005665 1.1e-77 294.3 535 39.4
Gorai.007G247500 Gossypium raimondii HOM05D004970 ORTHO05D005665 1.4e-77 293.9 535 39.4
Potri.019G043300 Populus trichocarpa HOM05D004970 ORTHO05D005665 2.4e-77 293.1 509 40.7
Potri.013G075400 Populus trichocarpa HOM05D004970 ORTHO05D005665 5.4e-77 292.0 509 40.9
Sabra19G0054000 Salix brachista HOM05D004970 ORTHO05D005665 1.6e-76 290.4 509 41.3
Ciclev10031289m.g Citrus clementina HOM05D004970 ORTHO05D005665 2.9e-75 286.2 229 68.1
Prupe.2G329700 Prunus persica HOM05D004970 ORTHO05D005665 2.9e-75 286.2 512 39.5
Aa31LG2G2110 Aethionema arabicum HOM05D004970 ORTHO05D005665 4.3e-74 282.3 513 40.2
Lj3g0014992 Lotus japonicus HOM05D004970 ORTHO05D005665 3.6e-73 279.3 511 41.1
MELO3C024760.2 Cucumis melo HOM05D004970 ORTHO05D005665 1.0e-72 277.7 509 39.7
Glyma.12G013300 Glycine max HOM05D004970 ORTHO05D005665 2.3e-72 276.6 511 40.7
TWI32G0575 Tripterygium wilfordii HOM05D004970 ORTHO05D005665 8.9e-72 274.6 511 38.7
CsaV3_2G035830 Cucumis sativus L. HOM05D004970 ORTHO05D005665 1.5e-71 273.9 509 38.9
ClCG02G007910 Citrullus lanatus HOM05D004970 ORTHO05D005665 2.6e-71 273.1 530 37.4
Thhalv10002486m.g Eutrema salsugineum HOM05D004970 ORTHO05D005665 5.8e-71 271.9 520 39.0
Sp5g19000 Schrenkiella parvula HOM05D004970 ORTHO05D005665 9.8e-71 271.2 520 39.0
THA.LOC104821684 Tarenaya hassleriana HOM05D004970 ORTHO05D005665 1.7e-70 270.4 514 39.9
Glyma.09G223600 Glycine max HOM05D004970 ORTHO05D005665 2.2e-70 270.0 511 40.1
Carub.0002s0979 Capsella rubella HOM05D004970 ORTHO05D005665 1.1e-69 267.7 523 39.8
CARHR056270 Cardamine hirsuta HOM05D004970 ORTHO05D005665 2.4e-69 266.5 520 39.2
Gohir.D08G239800 Gossypium hirsutum HOM05D004970 ORTHO05D005665 3.2e-69 266.2 509 39.3
TWI60G0079 Tripterygium wilfordii HOM05D004970 ORTHO05D005665 3.2e-69 266.2 510 38.4
Phvul.011G016400 Phaseolus vulgaris HOM05D004970 ORTHO05D005665 7.0e-69 265.0 511 39.5
Gorai.004G255000 Gossypium raimondii HOM05D004970 ORTHO05D005665 9.2e-69 264.6 509 39.1
FAN01G0343 Fragaria x ananassa HOM05D004970 ORTHO05D005665 2.7e-68 263.1 484 40.5
Nn1g09277 Nelumbo nucifera HOM05D004970 ORTHO05D005665 2.7e-68 263.1 508 37.4
Gohir.A08G221630 Gossypium hirsutum HOM05D004970 ORTHO05D005665 7.8e-68 261.5 509 38.9
MD07G1311500 Malus domestica HOM05D004970 ORTHO05D005665 7.8e-68 261.5 515 38.1
AL2G19270 Arabidopsis lyrata HOM05D004970 ORTHO05D005665 1.3e-67 260.8 519 38.9
Medtr0172s0030 Medicago truncatula HOM05D004970 ORTHO05D005665 1.7e-67 260.4 510 38.0
MD01G1240100 Malus domestica HOM05D004970 ORTHO05D005665 3.0e-67 259.6 514 38.1
Sabra13G0064900 Salix brachista HOM05D004970 ORTHO05D005665 3.0e-67 259.6 533 37.3
VMungo1127G0435 Vigna mungo HOM05D004970 ORTHO05D005665 3.0e-67 259.6 511 38.9
TAR375G0320 Trochodendron aralioides HOM05D004970 ORTHO05D005665 3.9e-67 259.2 545 36.0
arahy.Tifrunner.gnm1.ann1.TJCL76 Arachis hypogaea HOM05D004970 ORTHO05D005665 5.0e-67 258.8 512 38.3
arahy.Tifrunner.gnm1.ann1.N044W1 Arachis hypogaea HOM05D004970 ORTHO05D005665 1.9e-66 256.9 512 38.1
Solyc03g097320.3 Solanum lycopersicum HOM05D004970 ORTHO05D005665 1.9e-66 256.9 510 36.9
Sopen03g028090 Solanum pennellii HOM05D004970 ORTHO05D005665 1.9e-66 256.9 510 36.9
AT1G64860 Arabidopsis thaliana HOM05D004970 ORTHO05D005665 5.6e-66 255.4 518 38.2
Nitab4.5_0000021g0930 Nicotiana tabacum HOM05D004970 ORTHO05D005665 7.3e-66 255.0 512 36.5
Nitab4.5_0005545g0050 Nicotiana tabacum HOM05D004970 ORTHO05D005665 1.2e-65 254.2 509 36.0
RcHm_v2.0_Chr1g0384631 Rosa chinensis HOM05D004970 ORTHO05D005665 3.6e-65 252.7 512 38.1
Psat7g161560 Pisum sativum HOM05D004970 ORTHO05D005665 4.7e-65 252.3 508 37.8
FvH4_7g34280 Fragaria vesca HOM05D004970 ORTHO05D005665 6.2e-65 251.9 515 38.3
Ca_00814_v3 Cicer arietinum L. HOM05D004970 ORTHO05D005665 1.1e-64 251.1 519 37.6
FAN10G0750 Fragaria x ananassa HOM05D004970 ORTHO05D005665 1.8e-64 250.4 513 38.0
Lalb_Chr19g0140121 Lupinus albus HOM05D004970 ORTHO05D005665 4.0e-64 249.2 511 37.8
Sed0007466 Sechium edule HOM05D004970 ORTHO05D005665 5.2e-64 248.8 229 60.7
Ca_13824_v3 Cicer arietinum L. HOM05D004970 ORTHO05D005665 1.2e-63 247.7 519 37.4
Lalb_Chr01g0000711 Lupinus albus HOM05D004970 ORTHO05D005665 1.5e-63 247.3 509 37.5
Sed0000344 Sechium edule HOM05D004970 ORTHO05D005665 1.5e-63 247.3 509 36.7
BcaB05g23594 Brassica carinata HOM05D004970 ORTHO05D005665 9.8e-63 244.6 513 37.0
CSS0041522 Camellia sinensis var. sinensis HOM05D004970 ORTHO05D005665 9.8e-63 244.6 509 37.1
CSS0006334 Camellia sinensis var. sinensis HOM05D004970 ORTHO05D005665 2.9e-62 243.0 510 36.7
DCAR_020435 Daucus carota HOM05D004970 ORTHO05D005665 3.2e-61 239.6 507 35.5
Nitab4.5_0000645g0090 Nicotiana tabacum HOM05D004970 ORTHO05D005665 7.1e-61 238.4 506 36.2
FAN03G2928 Fragaria x ananassa HOM05D004970 ORTHO05D005665 6.0e-60 235.3 512 36.3
CAN.G732.31 Capsicum annuum HOM05D004970 ORTHO05D005665 7.8e-60 235.0 509 34.8
MBI04_g30791_MAGBIO Magnolia biondii HOM05D004970 ORTHO05D005665 7.8e-60 235.0 480 36.2
PGSC0003DMG400027038 Solanum tuberosum HOM05D004970 ORTHO05D005665 3.0e-59 233.0 511 35.6
Nn3g19169 Nelumbo nucifera HOM05D004970 ORTHO05D005665 8.6e-59 231.5 230 56.1
Sopen06g029080 Solanum pennellii HOM05D004970 ORTHO05D005665 8.6e-59 231.5 511 35.6
Dinv17236 Davidia involucrata HOM05D004970 ORTHO05D005665 9.5e-58 228.0 268 51.9
Nitab4.5_0002998g0010 Nicotiana tabacum HOM05D004970 ORTHO05D005665 2.1e-57 226.9 507 35.9
Oeu028991.1 Olea europaea HOM05D004970 ORTHO05D005665 2.1e-57 226.9 510 36.3
TPR.G20254 Trifolium pratense HOM05D004970 ORTHO05D005665 1.1e-56 224.6 512 36.3
Solyc06g072710.3 Solanum lycopersicum HOM05D004970 ORTHO05D005665 2.3e-56 223.4 511 34.8
MSTRG.8566 Avicennia marina HOM05D004970 ORTHO05D005665 3.1e-56 223.0 516 36.4
CAN.G65.124 Capsicum annuum HOM05D004970 ORTHO05D005665 3.1e-56 223.0 512 35.0
Sc13g0011030 Simmondsia chinensis HOM05D004970 ORTHO05D005665 6.8e-56 221.9 509 36.1
vmacro06358 Vaccinium macrocarpon HOM05D004970 ORTHO05D005665 6.8e-56 221.9 506 35.6
A02p24000 Brassica napus HOM05D004970 ORTHO05D005665 1.5e-55 220.7 521 35.9
C02p37850 Brassica napus HOM05D004970 ORTHO05D005665 3.4e-55 219.5 515 35.7
BolC2t09801H Brassica oleracea HOM05D004970 ORTHO05D005665 3.4e-55 219.5 515 35.7
BcaC03g16031 Brassica carinata HOM05D004970 ORTHO05D005665 1.3e-54 217.6 518 35.5
BraA02t07395Z Brassica rapa HOM05D004970 ORTHO05D005665 2.9e-54 216.5 521 35.5
Lj3C883T3 Lonicera japonica HOM05D004970 ORTHO05D005665 1.1e-53 214.5 522 34.5
GSVIVG01024261001 Vitis vinifera HOM05D004970 ORTHO05D005665 2.4e-53 213.4 510 35.9
PSO782G0173 Papaver somniferum HOM05D004970 ORTHO05D005665 4.6e-52 209.1 514 35.6
ECA233G0740 Erigeron canadensis HOM05D004970 ORTHO05D005665 1.7e-51 207.2 513 33.1
Peaxi162Scf00516g00423 Petunia axillaris HOM05D004970 ORTHO05D005665 2.3e-51 206.8 224 54.0
EL10Ac2g02539 Beta vulgaris HOM05D004970 ORTHO05D005665 5.1e-51 205.7 488 35.7
Aqoxy3G01903 Aquilegia oxysepala HOM05D004970 ORTHO05D005665 6.6e-51 205.3 512 35.7
CSS0029772 Camellia sinensis var. sinensis HOM05D004970 ORTHO05D005665 1.1e-50 204.5 231 53.7
Peaxi162Scf00815g00348 Petunia axillaris HOM05D004970 ORTHO05D005665 2.5e-50 203.4 225 54.2
Rhsim03G0225500 Rhododendron simsii HOM05D004970 ORTHO05D005665 1.2e-49 201.1 283 47.0
PSO063G5802 Papaver somniferum HOM05D004970 ORTHO05D005665 2.1e-49 200.3 519 34.7
Ah.10g025760 Amaranthus hybridus HOM05D004970 ORTHO05D005665 3.6e-49 199.5 509 32.4
PGSC0003DMG400026491 Solanum tuberosum HOM05D004970 ORTHO05D005665 5.2e-48 195.7 457 34.1
CDE12G0545 Ceratophyllum demersum HOM05D004970 ORTHO05D005665 1.2e-47 194.5 513 32.7
CDE01G0673 Ceratophyllum demersum HOM05D004970 ORTHO05D005665 4.4e-47 192.6 512 33.0
ATR0568G198 Amborella trichopoda HOM05D004970 ORTHO05D005665 1.7e-46 190.7 508 33.3
Lsat_1_v5_gn_8_14040 Lactuca sativa HOM05D004970 ORTHO05D005665 2.9e-46 189.9 511 32.5
Migut.H00003 Erythranthe guttata HOM05D004970 ORTHO05D005665 4.9e-46 189.1 529 33.5
AUR62024839 Chenopodium quinoa HOM05D004970 ORTHO05D005665 1.4e-45 187.6 509 32.8
ECA238G3380 Erigeron canadensis HOM05D004970 ORTHO05D005665 1.9e-45 187.2 508 32.5
Lsat_1_v5_gn_2_127081 Lactuca sativa HOM05D004970 ORTHO05D005665 1.9e-45 187.2 511 33.7
HanXRQChr05g0144361 Helianthus annuus HOM05D004970 ORTHO05D005665 7.1e-45 185.3 511 31.1
AUR62032380 Chenopodium quinoa HOM05D004970 ORTHO05D005665 9.3e-45 184.9 509 33.0
CANSAT21G0704 Cannabis sativa HOM05D004970 ORTHO05D005665 2.1e-44 183.7 524 32.6
HanXRQChr14g0461121 Helianthus annuus HOM05D004970 ORTHO05D005665 3.0e-43 179.9 505 31.7
ECA232G1337 Erigeron canadensis HOM05D004970 ORTHO05D005665 3.3e-42 176.4 507 30.0
HanXRQChr08g0223061 Helianthus annuus HOM05D004970 ORTHO05D005665 4.3e-42 176.0 510 31.8
MSTRG.26919 Avicennia marina HOM05D004970 ORTHO05D005665 1.6e-41 174.1 513 31.4
Lsat_1_v5_gn_9_50600 Lactuca sativa HOM05D004970 ORTHO05D005665 6.9e-40 168.7 503 30.6
Eucgr.A02994 Eucalyptus grandis HOM05D004970 ORTHO05D005665 1.2e-39 167.9 242 47.5
Cc02_g00040 Coffea canephora HOM05D004970 ORTHO05D005665 2.0e-39 167.2 510 32.0
Cpa.g.sc3807.1 Carica papaya HOM05D004970 ORTHO05D005665 3.9e-35 152.9 84 97.6
SGA_v2.0_scaffold18G08209 Striga asiatica HOM05D004970 ORTHO05D005665 1.8e-32 144.1 507 29.2
Zm00001eb415360 Zea mays HOM05D004970 ORTHO05D005665 1.2e-31 141.4 514 28.2
unitig_52.g17686 Utricularia gibba HOM05D004970 ORTHO05D005665 6.4e-30 135.6 469 30.7
Glyma.07G232251 Glycine max HOM05D004970 ORTHO05D005665 7.9e-28 128.6 133 57.1
Actinidia24515 Actinidia chinensis HOM05D004970 ORTHO05D005665 5.1e-27 125.9 74 82.4
Dinv17237 Davidia involucrata HOM05D004970 ORTHO05D005665 6.7e-27 125.6 76 81.6
Zm00001eb172090 Zea mays HOM05D004970 ORTHO05D005665 1.9e-26 124.0 514 26.1
CSS0017291 Camellia sinensis var. sinensis HOM05D004970 ORTHO05D005665 9.6e-26 121.7 75 78.7
HanXRQChr15g0485731 Helianthus annuus HOM05D004970 ORTHO05D005665 3.7e-25 119.8 74 79.7
SalBow1G3212 Salvia bowleyana HOM05D004970 ORTHO05D005665 1.1e-24 118.2 76 76.3
unitig_0.g2401 Utricularia gibba HOM05D002300 ORTHO05D002340 3.1e-24 116.7 72 77.8
CDE11G0972 Ceratophyllum demersum HOM05D004970 ORTHO05D005665 6.9e-24 115.5 440 29.5
CDE02G4147 Ceratophyllum demersum HOM05D004970 ORTHO05D005665 2.6e-23 113.6 221 40.7
unitig_0.g2402 Utricularia gibba HOM05D004970 ORTHO05D005665 1.7e-22 110.9 227 39.2
Os08g0163400 Oryza sativa ssp. japonica HOM05D004970 ORTHO05D005665 1.8e-19 100.9 523 24.1
Peaxi162Scf00815g00359 Petunia axillaris HOM05D004970 ORTHO05D009229 1.8e-19 100.9 63 77.8
HPP92_022744 Vanilla planifolia HOM05D004970 ORTHO05D005665 4.8e-17 92.8 423 24.6
SEGI_26324 Sequoiadendron giganteum HOM05D004970 ORTHO05D005665 1.5e-15 87.8 92 47.8
SEGI_32403 Sequoiadendron giganteum HOM05D004970 ORTHO05D005665 1.5e-15 87.8 92 47.8
CDE02G0902 Ceratophyllum demersum HOM05D004970 ORTHO05D005665 3.4e-15 86.7 68 64.7
Ah.12g063400 Amaranthus hybridus HOM05D004970 ORTHO05D005665 3.2e-13 80.1 172 39.0
SEGI_09576 Sequoiadendron giganteum HOM05D004970 ORTHO05D005665 4.2e-13 79.7 98 36.7
Solyc03g097330.1 Solanum lycopersicum HOM05D004970 ORTHO05D005665 4.2e-13 79.7 106 47.2
MBI12_g00582_MAGBIO Magnolia biondii HOM05D004970 ORTHO05D000032 3.3e-10 70.1 57 56.1
Aa31LG3G6180 Aethionema arabicum HOM05D004970 ORTHO05D005665 4.1e-08 63.2 92 40.2
Pp3c14_4440 Physcomitrium patens HOM05D001257 ORTHO05D005665 7.7e-07 58.9 160 30.6
CBR_g17821 Chara braunii HOM05D000019 ORTHO05D000353 3.8e-06 56.6 79 45.6
Mapoly0009s0187 Marchantia polymorpha HOM05D001257 ORTHO05D005665 5.0e-06 56.2 65 44.6
Nn2g15224 Nelumbo nucifera HOM05D001257 ORTHO05D009836 5.0e-06 56.2 63 47.6


User provided reference genes

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