Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 1.0e-147 526.9 303 100.0
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 5.3e-133 478.0 303 86.1
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 2.0e-132 476.1 305 86.6
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 2.6e-132 475.7 305 83.6
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 2.6e-132 475.7 303 85.5
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 2.6e-132 475.7 303 85.5
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 4.5e-132 474.9 303 83.8
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 7.7e-132 474.2 304 83.9
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 2.2e-131 472.6 305 84.3
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 5.0e-131 471.5 305 83.9
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 8.5e-131 470.7 306 84.3
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 8.5e-131 470.7 303 85.1
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 2.5e-130 469.2 305 83.6
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 2.5e-130 469.2 305 83.6
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 3.2e-130 468.8 305 87.2
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 5.5e-130 468.0 303 84.2
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 5.5e-130 468.0 303 84.5
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 7.2e-130 467.6 305 84.3
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.6e-129 466.5 308 82.8
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 7.9e-129 464.2 303 82.2
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 2.3e-128 462.6 303 84.2
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 5.1e-128 461.5 304 85.2
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 8.8e-128 460.7 303 84.5
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 2.6e-127 459.1 305 82.3
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 1.3e-126 456.8 305 81.0
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 3.7e-126 455.3 305 79.7
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 1.8e-125 453.0 303 77.9
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 3.1e-125 452.2 306 85.6
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 3.1e-125 452.2 306 85.6
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 3.1e-125 452.2 306 85.6
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 2.6e-124 449.1 305 80.3
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 3.4e-124 448.7 303 77.6
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 3.4e-124 448.7 310 78.1
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 3.4e-124 448.7 303 80.2
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 4.5e-124 448.4 303 83.8
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 5.9e-124 448.0 304 84.9
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 5.9e-124 448.0 305 84.9
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 7.7e-124 447.6 303 83.5
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 7.7e-124 447.6 305 82.3
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 7.7e-124 447.6 305 79.3
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 1.7e-123 446.4 306 76.8
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 1.7e-123 446.4 303 78.2
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 2.2e-123 446.0 303 77.2
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 2.9e-123 445.7 304 78.9
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 3.8e-123 445.3 303 83.5
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 3.8e-123 445.3 303 79.5
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 5.0e-123 444.9 303 79.9
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 6.5e-123 444.5 305 80.7
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 8.5e-123 444.1 305 78.0
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 8.5e-123 444.1 306 76.8
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 8.5e-123 444.1 303 84.5
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 1.1e-122 443.7 304 81.2
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 1.1e-122 443.7 305 83.6
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 1.4e-122 443.4 307 82.7
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 1.4e-122 443.4 306 79.4
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 1.4e-122 443.4 306 79.1
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 1.4e-122 443.4 303 83.5
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 2.5e-122 442.6 303 80.5
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 4.2e-122 441.8 304 78.3
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 3.6e-121 438.7 305 81.0
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 3.6e-121 438.7 303 75.2
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 1.4e-120 436.8 305 80.0
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 1.4e-120 436.8 305 77.0
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 2.3e-120 436.0 303 80.9
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 2.3e-120 436.0 303 74.9
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 2.3e-120 436.0 303 74.9
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 2.3e-120 436.0 303 76.6
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 3.0e-120 435.6 303 76.2
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 3.9e-120 435.3 297 79.1
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 6.7e-120 434.5 304 78.0
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 6.7e-120 434.5 303 76.9
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 6.7e-120 434.5 305 76.7
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 8.8e-120 434.1 303 76.6
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 1.1e-119 433.7 305 73.8
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 1.5e-119 433.3 303 77.6
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 3.3e-119 432.2 303 78.2
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 3.3e-119 432.2 303 76.9
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 3.3e-119 432.2 303 78.2
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 3.3e-119 432.2 303 78.2
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 3.3e-119 432.2 303 79.9
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 7.4e-119 431.0 303 76.2
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 9.7e-119 430.6 303 77.6
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 9.7e-119 430.6 303 77.6
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 9.7e-119 430.6 303 76.9
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.3e-118 430.3 302 77.5
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 2.2e-118 429.5 303 75.6
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 2.2e-118 429.5 305 73.8
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 4.8e-118 428.3 305 75.1
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.1e-117 427.2 303 77.2
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 1.4e-117 426.8 313 71.9
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 2.4e-117 426.0 303 78.5
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 2.4e-117 426.0 303 77.6
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 1.6e-116 423.3 306 72.5
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 1.6e-116 423.3 307 74.3
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 2.0e-116 422.9 303 78.5
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 2.6e-116 422.5 297 75.8
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 4.5e-116 421.8 305 73.1
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 4.5e-116 421.8 305 73.1
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 1.3e-115 420.2 304 72.4
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 1.7e-115 419.9 305 74.1
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 1.9e-114 416.4 290 76.2
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 7.2e-114 414.5 306 79.4
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 2.1e-113 412.9 300 78.3
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 2.1e-113 412.9 307 70.4
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 4.7e-113 411.8 305 74.8
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 8.0e-113 411.0 305 77.4
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 6.7e-112 407.9 303 71.0
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.4e-109 400.2 281 79.0
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 1.8e-109 399.8 305 77.7
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 5.3e-109 398.3 303 69.0
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 1.6e-108 396.7 312 72.4
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 6.3e-102 374.8 303 70.6
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 6.3e-102 374.8 303 66.3
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 4.1e-101 372.1 303 65.3
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 1.6e-100 370.2 304 66.1
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 1.2e-95 354.0 294 68.7
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 3.8e-91 339.0 323 63.5
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 1.8e-88 330.1 304 58.2
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 8.9e-88 327.8 195 80.0
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 4.4e-87 325.5 253 76.3
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 1.9e-82 310.1 303 60.4
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 4.7e-81 305.4 299 57.9
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 1.1e-80 304.3 253 67.2
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 3.1e-80 302.8 304 55.3
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 4.9e-78 295.4 303 59.1
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 8.3e-70 268.1 302 51.7
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 1.5e-66 257.3 134 93.3
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 4.3e-58 229.2 272 59.6
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 3.1e-56 223.0 204 69.1
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 2.6e-55 219.9 192 69.3
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 4.4e-55 219.2 201 63.7
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 1.3e-49 201.1 305 44.9
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 1.6e-49 200.7 295 45.4
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 7.6e-47 191.8 199 59.8
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 8.4e-46 188.3 196 59.7
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 3.2e-45 186.4 167 76.0
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 7.4e-42 175.3 200 50.0
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 2.6e-39 166.8 229 47.6
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 4.5e-39 166.0 111 76.6
Sabra16G0204000 Salix brachista HOM05D004662 ORTHO05D005771 1.2e-36 157.9 260 53.8
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 1.2e-36 157.9 104 72.1
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 1.5e-31 141.0 163 51.5
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 1.1e-29 134.8 102 64.7
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 4.5e-23 112.8 154 51.3
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 1.4e-21 107.8 303 34.3
Zm00001eb116840 Zea mays HOM05D004662 ORTHO05D441867 1.4e-21 107.8 77 68.8
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 3.2e-21 106.7 303 34.0
Zm00001eb143820 Zea mays HOM05D004662 ORTHO05D005771 3.2e-21 106.7 77 67.5
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 7.2e-21 105.5 61 78.7
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 6.7e-19 99.0 71 67.6
VMungo0540G2311 Vigna mungo HOM05D004662 ORTHO05D005771 2.2e-14 84.0 117 58.1
VMungo1309G1979 Vigna mungo HOM05D004662 ORTHO05D005771 1.9e-13 80.9 118 51.7
COL.COLO4_03460 Corchorus olitorius HOM05D004662 ORTHO05D157366 7.2e-13 79.0 145 44.1
CAN.G1058.32 Capsicum annuum HOM05D004662 ORTHO05D005771 6.1e-12 75.9 52 82.7
VMungo1127G1535 Vigna mungo HOM05D004662 ORTHO05D005771 2.3e-11 73.9 47 72.3
VMungo0720G0221 Vigna mungo HOM05D004662 ORTHO05D005771 4.8e-09 66.2 52 71.2


User provided reference genes

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