Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc42.140 Carica papaya HOM05D000006 ORTHO05D004030 4.0e-77 291.6 171 100.0
Ciclev10001133m.g Citrus clementina HOM05D000006 ORTHO05D004030 4.3e-55 218.4 168 79.2
Potri.005G171700 Populus trichocarpa HOM05D000006 ORTHO05D004030 4.3e-55 218.4 168 69.6
Cfa015957 Carpinus fangiana HOM05D000006 ORTHO05D004030 2.8e-54 215.7 168 66.7
MSTRG.24147 Avicennia marina HOM05D000006 ORTHO05D004030 4.7e-54 214.9 129 82.2
Dinv26721 Davidia involucrata HOM05D000006 ORTHO05D004030 4.7e-54 214.9 119 88.2
Atru.chr13.1315 Acer truncatum HOM05D000006 ORTHO05D004030 1.1e-53 213.8 169 66.9
Atru.chr13.1359 Acer truncatum HOM05D000006 ORTHO05D004030 1.1e-53 213.8 169 66.9
Nitab4.5_0002496g0060 Nicotiana tabacum HOM05D000006 ORTHO05D004030 1.8e-53 213.0 129 81.4
COL.COLO4_21821 Corchorus olitorius HOM05D000006 ORTHO05D004030 2.3e-53 212.6 128 82.8
Haze_00526 Corylus avellana HOM05D000006 ORTHO05D004030 2.3e-53 212.6 168 65.5
Sabra05G0129200 Salix brachista HOM05D000006 ORTHO05D004030 2.3e-53 212.6 168 67.3
Thecc.08G116400 Theobroma cacao HOM05D000006 ORTHO05D004030 2.3e-53 212.6 127 82.7
CiPaw.06G024600 Carya illinoinensis HOM05D000006 ORTHO05D004030 5.2e-53 211.5 168 66.1
CiPaw.05G229200 Carya illinoinensis HOM05D000006 ORTHO05D004030 1.2e-52 210.3 116 87.9
Oeu039581.2 Olea europaea HOM05D000006 ORTHO05D004030 1.2e-52 210.3 119 84.9
QL05p058776 Quercus lobata HOM05D000006 ORTHO05D004030 1.2e-52 210.3 116 87.9
Sopen11g008540 Solanum pennellii HOM05D000006 ORTHO05D004030 3.4e-52 208.8 128 80.5
Dinv27386 Davidia involucrata HOM05D000006 ORTHO05D004030 4.4e-52 208.4 126 82.5
Duzib116G0798 Durio zibethinus HOM05D000006 ORTHO05D004030 4.4e-52 208.4 128 82.0
Eucgr.F04379 Eucalyptus grandis HOM05D000006 ORTHO05D004030 4.4e-52 208.4 130 81.5
Gohir.D06G041700 Gossypium hirsutum HOM05D000006 ORTHO05D004030 4.4e-52 208.4 169 66.9
Gorai.010G046900 Gossypium raimondii HOM05D000006 ORTHO05D004030 4.4e-52 208.4 169 66.9
Duzib093G0061 Durio zibethinus HOM05D000006 ORTHO05D004030 5.8e-52 208.0 128 82.0
Gohir.A06G040700 Gossypium hirsutum HOM05D000006 ORTHO05D004030 9.9e-52 207.2 169 66.9
Oeu001989.1 Olea europaea HOM05D000006 ORTHO05D004030 9.9e-52 207.2 116 86.2
Prupe.1G506200 Prunus persica HOM05D000006 ORTHO05D004030 1.3e-51 206.8 116 86.2
DCAR_014281 Daucus carota HOM05D000006 ORTHO05D004030 1.7e-51 206.5 116 86.2
Potri.002G089500 Populus trichocarpa HOM05D000006 ORTHO05D004030 1.7e-51 206.5 168 66.7
MSTRG.22428 Avicennia marina HOM05D000006 ORTHO05D004030 2.2e-51 206.1 119 84.0
PGR142G3648 Punica granatum HOM05D000006 ORTHO05D004030 2.2e-51 206.1 130 80.8
EL10Ac1g00041 Beta vulgaris HOM05D000006 ORTHO05D004030 4.9e-51 204.9 168 64.9
MD15G1358600 Malus domestica HOM05D000006 ORTHO05D004030 4.9e-51 204.9 116 85.3
THA.LOC104819319 Tarenaya hassleriana HOM05D000006 ORTHO05D004030 4.9e-51 204.9 168 65.5
Rhsim11G0065000 Rhododendron simsii HOM05D000006 ORTHO05D004030 6.4e-51 204.5 128 81.2
RcHm_v2.0_Chr7g0240841 Rosa chinensis HOM05D000006 ORTHO05D004030 6.4e-51 204.5 132 78.0
TAR381G0924 Trochodendron aralioides HOM05D000006 ORTHO05D004030 8.3e-51 204.1 122 82.0
Ah.05g172680 Amaranthus hybridus HOM05D000006 ORTHO05D004030 1.1e-50 203.8 119 82.4
Carub.0008s2540 Capsella rubella HOM05D000006 ORTHO05D004030 1.1e-50 203.8 120 81.7
Nn1g05200 Nelumbo nucifera HOM05D000006 ORTHO05D004030 1.1e-50 203.8 168 62.5
vmacro12808 Vaccinium macrocarpon HOM05D000006 ORTHO05D004030 1.1e-50 203.8 116 85.3
Actinidia03495 Actinidia chinensis HOM05D000006 ORTHO05D004030 1.4e-50 203.4 118 83.1
CsaV3_5G023540 Cucumis sativus L. HOM05D000006 ORTHO05D004030 1.4e-50 203.4 125 80.0
MD08G1173300 Malus domestica HOM05D000006 ORTHO05D004030 1.4e-50 203.4 116 84.5
SGA_v2.0_scaffold25G11094 Striga asiatica HOM05D000006 ORTHO05D004030 1.4e-50 203.4 116 84.5
MELO3C022788.2 Cucumis melo HOM05D000006 ORTHO05D004030 1.9e-50 203.0 125 79.2
THA.LOC104799527 Tarenaya hassleriana HOM05D000006 ORTHO05D004030 1.9e-50 203.0 126 80.2
ClCG03G009080 Citrullus lanatus HOM05D000006 ORTHO05D004030 2.4e-50 202.6 118 83.1
MBI04_g34117_MAGBIO Magnolia biondii HOM05D000006 ORTHO05D004030 3.2e-50 202.2 130 79.2
BcaC04g23307 Brassica carinata HOM05D000006 ORTHO05D004030 4.1e-50 201.8 131 76.3
C09p09880 Brassica napus HOM05D000006 ORTHO05D004030 4.1e-50 201.8 131 76.3
BolC9t53896H Brassica oleracea HOM05D000006 ORTHO05D004030 4.1e-50 201.8 131 76.3
FAN08G2703 Fragaria x ananassa HOM05D000006 ORTHO05D004030 4.1e-50 201.8 129 78.3
Sp6g33660 Schrenkiella parvula HOM05D000006 ORTHO05D004030 4.1e-50 201.8 129 77.5
CANSAT56G0745 Cannabis sativa HOM05D000006 ORTHO05D004030 5.4e-50 201.4 117 85.5
AT5G64610 Arabidopsis thaliana HOM05D000006 ORTHO05D004030 7.1e-50 201.1 121 80.2
FAN13G0359 Fragaria x ananassa HOM05D000006 ORTHO05D004030 7.1e-50 201.1 129 78.3
Glyma.06G316400 Glycine max HOM05D000006 ORTHO05D004030 7.1e-50 201.1 127 80.3
BcaB04g19978 Brassica carinata HOM05D000006 ORTHO05D004030 9.2e-50 200.7 122 78.7
Thhalv10013550m.g Eutrema salsugineum HOM05D000006 ORTHO05D004030 9.2e-50 200.7 124 79.0
FvH4_5g38850 Fragaria vesca HOM05D000006 ORTHO05D004030 9.2e-50 200.7 129 77.5
FAN18G2681 Fragaria x ananassa HOM05D000006 ORTHO05D004030 9.2e-50 200.7 129 77.5
Cc04_g08910 Coffea canephora HOM05D000006 ORTHO05D004030 1.2e-49 200.3 105 91.4
Lj4A550G32 Lonicera japonica HOM05D000006 ORTHO05D004030 1.2e-49 200.3 119 83.2
Aa31LG3G17360 Aethionema arabicum HOM05D000006 ORTHO05D004030 1.6e-49 199.9 122 80.3
AT5G09740 Arabidopsis thaliana HOM05D000006 ORTHO05D004030 1.6e-49 199.9 122 79.5
A09p08740 Brassica napus HOM05D000006 ORTHO05D004030 1.6e-49 199.9 131 75.6
BraA09t36523Z Brassica rapa HOM05D000006 ORTHO05D004030 1.6e-49 199.9 131 75.6
AUR62023606 Chenopodium quinoa HOM05D000006 ORTHO05D004030 2.1e-49 199.5 119 81.5
FAN04G0021 Fragaria x ananassa HOM05D000006 ORTHO05D004030 2.1e-49 199.5 129 77.5
BcaB08g37162 Brassica carinata HOM05D000006 ORTHO05D004030 2.7e-49 199.1 119 82.4
Manes.18G072700 Manihot esculenta HOM05D000006 ORTHO05D004030 2.7e-49 199.1 159 67.3
unitig_21.g20189 Utricularia gibba HOM05D000006 ORTHO05D004030 3.5e-49 198.7 117 82.9
AL8G42020 Arabidopsis lyrata HOM05D000006 ORTHO05D004030 7.8e-49 197.6 121 79.3
CSS0012091 Camellia sinensis var. sinensis HOM05D000006 ORTHO05D004030 7.8e-49 197.6 105 90.5
TAR625G0616 Trochodendron aralioides HOM05D000006 ORTHO05D004030 7.8e-49 197.6 171 60.8
Actinidia23042 Actinidia chinensis HOM05D000006 ORTHO05D004030 1.0e-48 197.2 168 62.5
A10p27700 Brassica napus HOM05D000006 ORTHO05D004030 1.0e-48 197.2 123 79.7
BraA10t44822Z Brassica rapa HOM05D000006 ORTHO05D004030 1.0e-48 197.2 123 79.7
Aa31LG1G17340 Aethionema arabicum HOM05D000006 ORTHO05D004030 1.7e-48 196.4 117 80.3
Lj4A578G72 Lonicera japonica HOM05D000006 ORTHO05D004030 1.7e-48 196.4 105 89.5
Lj3g0019564 Lotus japonicus HOM05D000006 ORTHO05D004030 1.7e-48 196.4 169 63.9
BcaB08g37191 Brassica carinata HOM05D000006 ORTHO05D004030 2.3e-48 196.1 114 83.3
Thhalv10004220m.g Eutrema salsugineum HOM05D000006 ORTHO05D004030 3.0e-48 195.7 117 80.3
CARHR203660 Cardamine hirsuta HOM05D000006 ORTHO05D004030 3.9e-48 195.3 132 75.0
Glyma.04G130300 Glycine max HOM05D000006 ORTHO05D004030 3.9e-48 195.3 129 77.5
Lj7C307G3 Lonicera japonica HOM05D000006 ORTHO05D004030 3.9e-48 195.3 122 77.0
PSO210G6583 Papaver somniferum HOM05D000006 ORTHO05D004030 5.1e-48 194.9 103 89.3
PSO447G0296 Papaver somniferum HOM05D000006 ORTHO05D004030 5.1e-48 194.9 103 89.3
Sp2g27670 Schrenkiella parvula HOM05D000006 ORTHO05D004030 5.1e-48 194.9 127 75.6
Psat5g230080 Pisum sativum HOM05D000006 ORTHO05D004030 6.6e-48 194.5 169 62.7
HPP92_004738 Vanilla planifolia HOM05D000006 ORTHO05D004030 6.6e-48 194.5 132 75.8
Migut.N03322 Erythranthe guttata HOM05D000006 ORTHO05D004030 8.6e-48 194.1 129 76.0
Ca_14036_v3 Cicer arietinum L. HOM05D000006 ORTHO05D004030 1.1e-47 193.7 128 75.0
Peaxi162Scf00360g00314 Petunia axillaris HOM05D000006 ORTHO05D004030 1.1e-47 193.7 179 62.6
arahy.Tifrunner.gnm1.ann1.6W1W5K Arachis hypogaea HOM05D000006 ORTHO05D004030 1.5e-47 193.4 169 62.7
arahy.Tifrunner.gnm1.ann1.B54JNT Arachis hypogaea HOM05D000006 ORTHO05D004030 1.5e-47 193.4 169 62.7
Gohir.D05G234200 Gossypium hirsutum HOM05D000006 ORTHO05D004030 1.5e-47 193.4 124 79.0
Gorai.009G242400 Gossypium raimondii HOM05D000006 ORTHO05D004030 1.5e-47 193.4 124 79.0
Gohir.A05G231900 Gossypium hirsutum HOM05D000006 ORTHO05D004030 1.9e-47 193.0 124 79.0
VMungo1080G1349 Vigna mungo HOM05D000006 ORTHO05D004030 1.9e-47 193.0 169 63.9
Lalb_Chr18g0049021 Lupinus albus HOM05D000006 ORTHO05D004030 3.3e-47 192.2 117 79.5
Medtr3g007710 Medicago truncatula HOM05D000006 ORTHO05D004030 3.3e-47 192.2 169 61.5
Phvul.005G011500 Phaseolus vulgaris HOM05D000006 ORTHO05D004030 4.3e-47 191.8 120 78.3
C09p67790 Brassica napus HOM05D000006 ORTHO05D004030 5.6e-47 191.4 115 82.6
SalBow7G0198 Salvia bowleyana HOM05D000006 ORTHO05D004030 5.6e-47 191.4 130 74.6
SalBow7G3631 Salvia bowleyana HOM05D000006 ORTHO05D004030 5.6e-47 191.4 130 74.6
Solyc11g013520.3 Solanum lycopersicum HOM05D000006 ORTHO05D004030 5.6e-47 191.4 94 95.7
TWI79G1190 Tripterygium wilfordii HOM05D000006 ORTHO05D004030 5.6e-47 191.4 170 62.4
Sc01g0001570 Simmondsia chinensis HOM05D000006 ORTHO05D004030 9.6e-47 190.7 130 75.4
TPR.G12257 Trifolium pratense HOM05D000006 ORTHO05D004030 9.6e-47 190.7 169 61.5
Sc23g0000920 Simmondsia chinensis HOM05D000006 ORTHO05D004030 1.2e-46 190.3 114 79.8
AL6G20140 Arabidopsis lyrata HOM05D000006 ORTHO05D004030 1.6e-46 189.9 116 81.0
BolC9t59541H Brassica oleracea HOM05D000006 ORTHO05D004030 2.1e-46 189.5 130 76.2
CAN.G255.14 Capsicum annuum HOM05D000006 ORTHO05D004030 2.8e-46 189.1 94 94.7
Lsat_1_v5_gn_1_12240 Lactuca sativa HOM05D000006 ORTHO05D004030 2.8e-46 189.1 105 85.7
ATR0564G159 Amborella trichopoda HOM05D000006 ORTHO05D004030 3.6e-46 188.7 118 78.0
HanXRQChr02g0044231 Helianthus annuus HOM05D000006 ORTHO05D004030 3.6e-46 188.7 105 85.7
ECA247G3040 Erigeron canadensis HOM05D000006 ORTHO05D000091 6.2e-46 188.0 103 87.4
AUR62004690 Chenopodium quinoa HOM05D000006 ORTHO05D004030 1.1e-45 187.2 134 71.6
GSVIVG01008945001 Vitis vinifera HOM05D000006 ORTHO05D004030 1.1e-45 187.2 94 93.6
Phvul.005G010700 Phaseolus vulgaris HOM05D000006 ORTHO05D004030 2.4e-45 186.0 129 74.4
SEGI_25942 Sequoiadendron giganteum HOM05D000006 ORTHO05D004030 2.4e-45 186.0 130 70.0
Aqoxy5G01525 Aquilegia oxysepala HOM05D000006 ORTHO05D004030 3.1e-45 185.7 111 81.1
Sabra02G0070500 Salix brachista HOM05D000006 ORTHO05D004030 6.8e-45 184.5 212 51.9
Nn5g28927 Nelumbo nucifera HOM05D000006 ORTHO05D004030 8.9e-45 184.1 109 81.7
CDE02G1028 Ceratophyllum demersum HOM05D000006 ORTHO05D004030 2.0e-44 183.0 108 83.3
Sed0027470 Sechium edule HOM05D000006 ORTHO05D004030 3.4e-44 182.2 108 82.4
SalBow6G6076 Salvia bowleyana HOM05D000006 ORTHO05D004030 1.1e-42 177.2 158 60.8
Zm00001eb109790 Zea mays HOM05D000006 ORTHO05D004030 4.6e-41 171.8 106 83.0
Os07g0626600 Oryza sativa ssp. japonica HOM05D000006 ORTHO05D004030 6.0e-41 171.4 108 82.4
SEGI_07614 Sequoiadendron giganteum HOM05D000006 ORTHO05D004030 1.3e-40 170.2 115 70.4
Zm00001eb328000 Zea mays HOM05D000006 ORTHO05D004030 2.3e-40 169.5 108 81.5
AagrBONN_evm.TU.Sc2ySwM_344.1570 Anthoceros agrestis HOM05D000006 ORTHO05D004030 1.9e-39 166.4 133 66.2
Mapoly0014s0119 Marchantia polymorpha HOM05D000006 ORTHO05D004030 7.3e-39 164.5 131 67.2
Pp3c4_18030 Physcomitrium patens HOM05D000006 ORTHO05D004030 1.3e-38 163.7 122 69.7
Hund16820 Selenicereus undatus HOM05D000006 ORTHO05D004030 5.3e-37 158.3 118 68.6
TAR628G0303 Trochodendron aralioides HOM05D000006 ORTHO05D004030 2.6e-36 156.0 133 62.4
Nitab4.5_0000051g0130 Nicotiana tabacum HOM05D000006 ORTHO05D004030 1.9e-34 149.8 87 80.5
SMO351G0268 Selaginella moellendorffii HOM05D000006 ORTHO05D004030 9.3e-34 147.5 114 64.9
CBR_g17677 Chara braunii HOM05D000006 ORTHO05D004030 2.1e-30 136.3 142 56.3
CARHR278580 Cardamine hirsuta HOM05D000006 ORTHO05D004030 4.0e-29 132.1 69 91.3
EL10Ac6g13852 Beta vulgaris HOM05D000006 ORTHO05D004030 4.2e-26 122.1 65 87.7
Aqoxy6G00495 Aquilegia oxysepala HOM05D000006 ORTHO05D004030 1.1e-23 114.0 126 52.4
SGA_v2.0_scaffold28G12032 Striga asiatica HOM05D000006 ORTHO05D004030 1.9e-23 113.2 124 57.3
CAN.G222.83 Capsicum annuum HOM05D000006 ORTHO05D004030 9.3e-18 94.4 61 77.0
Hma1.2p1_0221F.1_g093150 Hydrangea macrophylla HOM05D000006 ORTHO05D004030 1.6e-17 93.6 109 48.6
MCO10G273 Micromonas commoda HOM05D000006 ORTHO05D004030 7.9e-17 91.3 127 43.3
Glyma.06G315500 Glycine max HOM05D002539 ORTHO05D002876 1.1e-15 87.4 51 88.2
Hund22846 Selenicereus undatus HOM05D000006 ORTHO05D004030 2.5e-15 86.3 71 62.0
Cre03.g143907 Chlamydomonas reinhardtii HOM05D000006 ORTHO05D004030 1.3e-14 84.0 99 46.5
CDE07G1414 Ceratophyllum demersum HOM05D000006 ORTHO05D004030 3.4e-12 75.9 49 71.4
PRCOL_00001934 Prasinoderma coloniale HOM05D000006 ORTHO05D004030 2.2e-11 73.2 124 37.9
Pp3c13_14710 Physcomitrium patens HOM05D000006 ORTHO05D004030 4.2e-10 68.9 77 49.4
PSO541G6025 Papaver somniferum HOM05D000006 ORTHO05D004030 7.1e-10 68.2 97 39.2
PSO675G4731 Papaver somniferum HOM05D000006 ORTHO05D004030 7.1e-10 68.2 97 39.2
CAN.G1733.7 Capsicum annuum HOM05D000006 ORTHO05D004030 8.7e-08 61.2 36 83.3
TAR376G0810 Trochodendron aralioides HOM05D000006 ORTHO05D004030 6.3e-06 55.1 46 56.5


User provided reference genes

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