Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc40.1 Carica papaya HOM05D004741 ORTHO05D005454 2.6e-219 765.0 364 100.0
TWI32G1217 Tripterygium wilfordii HOM05D004741 ORTHO05D005454 2.0e-158 562.8 300 84.3
Aa31LG2G18560 Aethionema arabicum HOM05D004741 ORTHO05D005454 1.6e-155 553.1 303 81.2
Manes.03G006700 Manihot esculenta HOM05D004741 ORTHO05D005454 1.6e-155 553.1 300 84.3
Atru.chr7.2571 Acer truncatum HOM05D004741 ORTHO05D005454 1.0e-154 550.4 300 82.0
THA.LOC104803607 Tarenaya hassleriana HOM05D004741 ORTHO05D005454 2.3e-154 549.3 300 81.0
Duzib168G2074 Durio zibethinus HOM05D004741 ORTHO05D005454 3.8e-154 548.5 300 81.7
AT4G31770 Arabidopsis thaliana HOM05D004741 ORTHO05D005454 8.6e-154 547.4 295 83.1
Carub.0007s0879 Capsella rubella HOM05D004741 ORTHO05D005454 1.1e-153 547.0 299 81.9
AL7G20240 Arabidopsis lyrata HOM05D004741 ORTHO05D005454 1.9e-153 546.2 299 82.3
DCAR_020033 Daucus carota HOM05D004741 ORTHO05D005454 1.9e-153 546.2 301 81.1
CARHR239670 Cardamine hirsuta HOM05D004741 ORTHO05D005454 2.5e-153 545.8 299 81.9
Potri.018G015300 Populus trichocarpa HOM05D004741 ORTHO05D005454 2.5e-153 545.8 300 82.3
RcHm_v2.0_Chr6g0299131 Rosa chinensis HOM05D004741 ORTHO05D005454 2.5e-153 545.8 299 80.6
Dinv22023 Davidia involucrata HOM05D004741 ORTHO05D005454 3.3e-153 545.4 301 80.1
GSVIVG01009251001 Vitis vinifera HOM05D004741 ORTHO05D005454 3.3e-153 545.4 300 81.7
ClCG08G013810 Citrullus lanatus HOM05D004741 ORTHO05D005454 5.5e-153 544.7 303 80.5
FAN15G2922 Fragaria x ananassa HOM05D004741 ORTHO05D005454 7.2e-153 544.3 300 80.3
CiPaw.07G232700 Carya illinoinensis HOM05D004741 ORTHO05D005454 1.2e-152 543.5 300 82.3
FvH4_2g41360 Fragaria vesca HOM05D004741 ORTHO05D005454 1.2e-152 543.5 300 80.7
CsaV3_2G032600 Cucumis sativus L. HOM05D004741 ORTHO05D005454 3.6e-152 542.0 303 80.5
Thecc.09G013800 Theobroma cacao HOM05D004741 ORTHO05D005454 3.6e-152 542.0 300 82.0
Sabra18G0018800 Salix brachista HOM05D004741 ORTHO05D005454 4.7e-152 541.6 300 82.0
Eucgr.C04030 Eucalyptus grandis HOM05D004741 ORTHO05D005454 6.1e-152 541.2 300 81.7
Gohir.D11G176300 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.8e-151 539.7 300 80.7
MELO3C011313.2 Cucumis melo HOM05D004741 ORTHO05D005454 4.0e-151 538.5 299 81.3
PSO210G2241 Papaver somniferum HOM05D004741 ORTHO05D005454 6.8e-151 537.7 300 80.0
BcaNung01502 Brassica carinata HOM05D004741 ORTHO05D005454 1.2e-150 537.0 299 79.9
TAR625G0772 Trochodendron aralioides HOM05D004741 ORTHO05D005454 1.2e-150 537.0 301 79.1
A08p18460 Brassica napus HOM05D004741 ORTHO05D005454 3.4e-150 535.4 300 80.7
Sed0002897 Sechium edule HOM05D004741 ORTHO05D005454 3.4e-150 535.4 303 78.5
BcaNung04120 Brassica carinata HOM05D004741 ORTHO05D005454 5.7e-150 534.6 299 80.3
MD15G1043800 Malus domestica HOM05D004741 ORTHO05D005454 5.7e-150 534.6 298 79.5
Sp7g29560 Schrenkiella parvula HOM05D004741 ORTHO05D005454 1.3e-149 533.5 299 80.9
BcaB03g12718 Brassica carinata HOM05D004741 ORTHO05D005454 2.2e-149 532.7 299 80.3
Lj1g0020479 Lotus japonicus HOM05D004741 ORTHO05D005454 2.2e-149 532.7 299 80.6
Nn8g39668 Nelumbo nucifera HOM05D004741 ORTHO05D005454 2.2e-149 532.7 301 79.4
QL02p018098 Quercus lobata HOM05D004741 ORTHO05D005454 2.2e-149 532.7 300 79.7
C07p58870 Brassica napus HOM05D004741 ORTHO05D005454 2.8e-149 532.3 300 79.7
BolC7t46334H Brassica oleracea HOM05D004741 ORTHO05D005454 2.8e-149 532.3 300 79.7
Thhalv10025305m.g Eutrema salsugineum HOM05D004741 ORTHO05D005454 2.8e-149 532.3 301 79.7
CSS0005545 Camellia sinensis var. sinensis HOM05D004741 ORTHO05D005454 6.3e-149 531.2 300 79.0
BraA08t33808Z Brassica rapa HOM05D004741 ORTHO05D005454 1.8e-148 529.6 300 80.7
PSO761G0470 Papaver somniferum HOM05D004741 ORTHO05D005454 1.8e-148 529.6 300 79.0
A03p60970 Brassica napus HOM05D004741 ORTHO05D005454 2.4e-148 529.3 300 79.3
BraA03t15138Z Brassica rapa HOM05D004741 ORTHO05D005454 2.4e-148 529.3 300 79.0
Lalb_Chr08g0244491 Lupinus albus HOM05D004741 ORTHO05D005454 4.1e-148 528.5 299 79.6
Glyma.04G059700 Glycine max HOM05D004741 ORTHO05D005454 9.2e-148 527.3 299 78.6
ECA246G1320 Erigeron canadensis HOM05D004741 ORTHO05D005454 2.0e-147 526.2 299 77.9
Aqoxy5G01951 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 2.7e-147 525.8 297 79.5
AUR62035754 Chenopodium quinoa HOM05D004741 ORTHO05D005454 3.5e-147 525.4 299 78.6
arahy.Tifrunner.gnm1.ann1.HM8GSV Arachis hypogaea HOM05D004741 ORTHO05D005454 1.0e-146 523.9 299 77.9
EL10Ac1g02297 Beta vulgaris HOM05D004741 ORTHO05D005454 1.7e-146 523.1 298 77.9
TPR.G1862 Trifolium pratense HOM05D004741 ORTHO05D005454 1.7e-146 523.1 300 78.0
Lsat_1_v5_gn_6_106561 Lactuca sativa HOM05D004741 ORTHO05D005454 2.3e-146 522.7 300 76.3
VMungo1309G1293 Vigna mungo HOM05D004741 ORTHO05D005454 2.3e-146 522.7 299 77.9
arahy.Tifrunner.gnm1.ann1.68HE9A Arachis hypogaea HOM05D004741 ORTHO05D005454 2.9e-146 522.3 299 77.6
Sc02g0008350 Simmondsia chinensis HOM05D004741 ORTHO05D005454 2.9e-146 522.3 298 77.5
Ca_15788_v3 Cicer arietinum L. HOM05D004741 ORTHO05D005454 3.8e-146 521.9 299 76.9
Medtr3g105810 Medicago truncatula HOM05D004741 ORTHO05D005454 3.8e-146 521.9 299 77.6
HanXRQChr10g0277671 Helianthus annuus HOM05D004741 ORTHO05D005454 8.6e-146 520.8 295 76.6
Oeu016078.1 Olea europaea HOM05D004741 ORTHO05D005454 8.6e-146 520.8 303 76.2
Phvul.009G085900 Phaseolus vulgaris HOM05D004741 ORTHO05D005454 1.1e-145 520.4 299 77.9
Lsat_1_v5_gn_4_135621 Lactuca sativa HOM05D004741 ORTHO05D005454 2.5e-145 519.2 300 76.0
Cfa013018 Carpinus fangiana HOM05D004741 ORTHO05D005454 2.1e-144 516.2 329 73.6
Psat5g034520 Pisum sativum HOM05D004741 ORTHO05D005454 2.1e-144 516.2 299 76.9
C03p87550 Brassica napus HOM05D004741 ORTHO05D005454 2.8e-144 515.8 305 78.0
BolC3t21075H Brassica oleracea HOM05D004741 ORTHO05D005454 2.8e-144 515.8 305 78.0
COL.COLO4_18967 Corchorus olitorius HOM05D004741 ORTHO05D005454 1.4e-143 513.5 299 79.6
vmacro21376 Vaccinium macrocarpon HOM05D004741 ORTHO05D005454 1.2e-142 510.4 300 77.3
Zm00001eb215780 Zea mays HOM05D004741 ORTHO05D005454 8.3e-141 504.2 294 74.5
MSTRG.20476 Avicennia marina HOM05D004741 ORTHO05D005454 1.4e-140 503.4 303 72.6
Peaxi162Scf00005g04810 Petunia axillaris HOM05D004741 ORTHO05D005454 1.9e-140 503.1 299 74.9
ATR0767G225 Amborella trichopoda HOM05D004741 ORTHO05D005454 2.4e-140 502.7 302 73.2
Migut.K00575 Erythranthe guttata HOM05D004741 ORTHO05D005454 7.0e-140 501.1 303 71.6
Aqoxy1G00870 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 1.2e-139 500.4 302 75.2
CAN.G673.1 Capsicum annuum HOM05D004741 ORTHO05D005454 2.7e-139 499.2 299 73.9
Nitab4.5_0006397g0010 Nicotiana tabacum HOM05D004741 ORTHO05D005454 3.5e-139 498.8 301 73.1
Solyc07g017640.2 Solanum lycopersicum HOM05D004741 ORTHO05D005454 4.6e-139 498.4 299 73.9
PGSC0003DMG400002300 Solanum tuberosum HOM05D004741 ORTHO05D005454 1.7e-138 496.5 299 73.9
Sopen07g006470 Solanum pennellii HOM05D004741 ORTHO05D005454 2.3e-138 496.1 299 73.6
CDE06G0415 Ceratophyllum demersum HOM05D004741 ORTHO05D005454 3.0e-138 495.7 300 74.0
Lj4A81G69 Lonicera japonica HOM05D004741 ORTHO05D005454 3.9e-138 495.4 345 65.5
RcHm_v2.0_Chr2g0135121 Rosa chinensis HOM05D004741 ORTHO05D005454 5.6e-137 491.5 301 74.8
Atru.BG.288.p Acer truncatum HOM05D004741 ORTHO05D005454 7.3e-137 491.1 296 73.6
Cc00_g23510 Coffea canephora HOM05D004741 ORTHO05D005454 7.3e-137 491.1 298 73.2
MBI16_g14670_MAGBIO Magnolia biondii HOM05D004741 ORTHO05D005454 7.3e-137 491.1 292 76.4
Ah.04g152730 Amaranthus hybridus HOM05D004741 ORTHO05D005454 1.2e-136 490.3 333 68.8
unitig_744.g24377 Utricularia gibba HOM05D004741 ORTHO05D005454 2.0e-134 483.0 303 69.6
Aqoxy4G02579 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 9.8e-134 480.7 295 75.3
BcaNung01500 Brassica carinata HOM05D004741 ORTHO05D005454 1.2e-126 457.2 299 71.6
SEGI_18909 Sequoiadendron giganteum HOM05D004741 ORTHO05D005454 2.6e-126 456.1 295 67.1
Mapoly0014s0124 Marchantia polymorpha HOM05D004741 ORTHO05D005454 1.9e-124 449.9 306 65.0
Gohir.1Z049533 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.2e-124 449.1 303 70.3
SalBow7G0863 Salvia bowleyana HOM05D004741 ORTHO05D005454 1.2e-120 437.2 260 75.8
SalBow7G1987 Salvia bowleyana HOM05D004741 ORTHO05D005454 1.2e-120 437.2 260 75.8
HPP92_007721 Vanilla planifolia HOM05D004741 ORTHO05D005454 1.6e-120 436.8 259 73.4
Gohir.A05G415901 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.9e-117 426.0 247 77.3
Gohir.A02G000200 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.1e-116 424.1 300 68.7
Gohir.A11G330400 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.1e-115 419.9 303 66.3
SMO284G0001 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 1.0e-114 417.5 294 64.3
SMO145G0212 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 1.7e-114 416.8 294 64.3
Pp3c24_19510 Physcomitrium patens HOM05D004741 ORTHO05D005454 8.1e-112 407.9 298 62.8
Rhsim06G0068400 Rhododendron simsii HOM05D004741 ORTHO05D005454 1.8e-111 406.8 306 63.7
MD08G1051300 Malus domestica HOM05D004741 ORTHO05D005454 1.7e-109 400.2 253 74.3
CBR_g10907 Chara braunii HOM05D004741 ORTHO05D005454 1.4e-108 397.1 325 56.3
FvH4_6g29560 Fragaria vesca HOM05D004741 ORTHO05D005454 8.7e-106 387.9 241 72.6
SGA_v2.0_scaffold443G51691 Striga asiatica HOM05D004741 ORTHO05D005454 1.9e-105 386.7 303 59.1
FAN14G3005 Fragaria x ananassa HOM05D004741 ORTHO05D005454 2.8e-104 382.9 241 72.2
Dinv44899 Davidia involucrata HOM05D004741 ORTHO05D005454 1.2e-102 377.5 274 65.3
MCO02G476 Micromonas commoda HOM05D004741 ORTHO05D005454 1.5e-102 377.1 283 59.0
BcaC01g01061 Brassica carinata HOM05D004741 ORTHO05D005454 3.4e-102 375.9 270 66.3
SGA_v2.0_scaffold48G18066 Striga asiatica HOM05D004741 ORTHO05D005454 4.9e-101 372.1 255 67.1
Prupe.1G397300 Prunus persica HOM05D004741 ORTHO05D005454 1.1e-100 370.9 205 81.0
Hund05236 Selenicereus undatus HOM05D004741 ORTHO05D005454 3.2e-100 369.4 206 78.2
Gohir.A07G233600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.1e-98 362.1 303 59.4
Cre02.g146950 Chlamydomonas reinhardtii HOM05D004741 ORTHO05D005454 3.3e-97 359.4 345 49.9
AUR62033828 Chenopodium quinoa HOM05D004741 ORTHO05D005454 3.2e-92 342.8 261 61.7
Nitab4.5_0000159g0030 Nicotiana tabacum HOM05D004741 ORTHO05D005454 5.7e-89 332.0 199 73.4
SGA_v2.0_scaffold24G10244 Striga asiatica HOM05D004741 ORTHO05D005454 3.7e-88 329.3 200 72.5
Gohir.A03G000005 Gossypium hirsutum HOM05D004741 ORTHO05D005454 8.2e-88 328.2 202 75.2
Gohir.A02G000050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.0e-87 325.9 202 74.3
PRCOL_00004462 Prasinoderma coloniale HOM05D004741 ORTHO05D005454 2.0e-86 323.6 327 46.8
Gohir.A09G249600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 8.4e-85 318.2 205 72.2
Gohir.A12G001100 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.1e-82 308.9 209 69.4
BcaB02g11404 Brassica carinata HOM05D004741 ORTHO05D005454 1.3e-80 304.3 167 81.4
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.3e-80 304.3 253 61.3
Haze_27111 Corylus avellana HOM05D004741 ORTHO05D005454 1.4e-74 284.3 296 44.3
RcHm_v2.0_Chr1g0357361 Rosa chinensis HOM05D004741 ORTHO05D005454 2.6e-70 270.0 151 79.5
Cfa025655 Carpinus fangiana HOM05D004741 ORTHO05D005454 3.2e-68 263.1 340 43.8
Gohir.1Z049489 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.2e-64 250.4 194 63.4
PSO210G0837 Papaver somniferum HOM05D004741 ORTHO05D005454 7.0e-63 245.4 164 67.7
Gohir.1Z049306 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.7e-62 241.9 142 76.1
Gohir.1Z049408 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.7e-62 241.9 142 76.1
Gohir.1Z049565 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.7e-62 241.9 142 76.1
Gohir.1Z049424 Gossypium hirsutum HOM05D004741 ORTHO05D005454 8.5e-61 238.4 142 75.4
Gohir.A07G000083 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.2e-56 223.8 154 66.9
MD13G1228500 Malus domestica HOM05D004741 ORTHO05D005454 5.7e-49 199.1 119 73.1
Gohir.A12G001050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.0e-42 178.3 96 81.2
AagrBONN_evm.TU.Sc2ySwM_369.559 Anthoceros agrestis HOM05D004741 ORTHO05D005454 2.2e-40 170.6 133 59.4
Gohir.A04G148266 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.2e-36 155.6 126 59.5
ATR0582G232 Amborella trichopoda HOM05D004741 ORTHO05D005454 9.5e-36 155.2 100 67.0
Lsat_1_v5_gn_9_90121 Lactuca sativa HOM05D000676 ORTHO05D001458 1.0e-34 151.8 108 64.8
Sopen07g006070 Solanum pennellii HOM05D004741 ORTHO05D005454 5.2e-34 149.4 86 73.3
Os03g0725300 Oryza sativa ssp. japonica HOM05D004741 ORTHO05D005454 4.0e-26 123.2 84 65.5
Gohir.D12G000832 Gossypium hirsutum HOM05D004741 ORTHO05D005454 8.9e-26 122.1 74 75.7
Gohir.A13G000900 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.4e-23 114.0 62 77.4
CAN.G1057.23 Capsicum annuum HOM05D004741 ORTHO05D005454 2.3e-13 80.9 107 43.0
PSO541G5767 Papaver somniferum HOM05D001230 ORTHO05D001067 8.6e-13 79.0 48 77.1
SalBow7G3287 Salvia bowleyana HOM05D004741 ORTHO05D005454 6.2e-11 72.8 43 69.8
Actinidia10255 Actinidia chinensis HOM05D004741 ORTHO05D005454 4.4e-09 66.6 36 80.6


User provided reference genes

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