Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc35.79 Carica papaya HOM05D007081 ORTHO05D008834 6.5e-151 537.3 268 100.0
Potri.002G197500 Populus trichocarpa HOM05D007081 ORTHO05D008834 1.1e-36 157.9 121 67.8
Haze_07555 Corylus avellana HOM05D007081 ORTHO05D008834 3.1e-36 156.4 116 68.1
CiPaw.11G022400 Carya illinoinensis HOM05D007081 ORTHO05D008834 5.3e-36 155.6 123 65.9
Cfa019177 Carpinus fangiana HOM05D007081 ORTHO05D008834 2.6e-35 153.3 116 66.4
Sabra02G0160000 Salix brachista HOM05D007081 ORTHO05D008834 3.5e-35 152.9 112 71.4
QL10p008625 Quercus lobata HOM05D007081 ORTHO05D008834 2.9e-34 149.8 109 68.8
QL10p008493 Quercus lobata HOM05D007081 ORTHO05D008834 6.5e-34 148.7 109 67.9
Ciclev10023760m.g Citrus clementina HOM05D007081 ORTHO05D008834 1.5e-33 147.5 112 70.5
GSVIVG01007682001 Vitis vinifera HOM05D007081 ORTHO05D008834 7.2e-33 145.2 112 67.0
Manes.14G062600 Manihot esculenta HOM05D007081 ORTHO05D008834 9.4e-33 144.8 106 68.9
RcHm_v2.0_Chr7g0192971 Rosa chinensis HOM05D007081 ORTHO05D008834 2.1e-32 143.7 105 70.5
CANSAT80G0092 Cannabis sativa HOM05D007081 ORTHO05D008834 2.7e-32 143.3 109 67.9
FvH4_5g05850 Fragaria vesca HOM05D007081 ORTHO05D008834 2.7e-32 143.3 110 69.1
FAN18G1088 Fragaria x ananassa HOM05D007081 ORTHO05D008834 2.7e-32 143.3 110 69.1
FAN04G1276 Fragaria x ananassa HOM05D007081 ORTHO05D008834 3.6e-32 142.9 130 60.8
TWI39G1151 Tripterygium wilfordii HOM05D007081 ORTHO05D008834 3.6e-32 142.9 108 68.5
Duzib205G1440 Durio zibethinus HOM05D007081 ORTHO05D008834 8.0e-32 141.7 105 69.5
FAN08G1021 Fragaria x ananassa HOM05D007081 ORTHO05D008834 8.0e-32 141.7 119 63.9
Thecc.03G023800 Theobroma cacao HOM05D007081 ORTHO05D008834 1.4e-31 141.0 105 67.6
TAR629G3400 Trochodendron aralioides HOM05D007081 ORTHO05D008834 1.8e-31 140.6 107 67.3
TPR.G31056 Trifolium pratense HOM05D007081 ORTHO05D008834 3.0e-31 139.8 150 50.7
MBI10_g32034_MAGBIO Magnolia biondii HOM05D007081 ORTHO05D008834 4.0e-31 139.4 108 67.6
MD14G1175400 Malus domestica HOM05D007081 ORTHO05D008834 4.0e-31 139.4 105 66.7
Ca_16151_v3 Cicer arietinum L. HOM05D007081 ORTHO05D008834 5.2e-31 139.0 114 64.0
Phvul.009G175500 Phaseolus vulgaris HOM05D007081 ORTHO05D008834 5.2e-31 139.0 117 65.8
Psat0s2597g0120 Pisum sativum HOM05D007081 ORTHO05D008834 8.8e-31 138.3 114 61.4
Lalb_Chr11g0070341 Lupinus albus HOM05D007081 ORTHO05D008834 1.2e-30 137.9 113 64.6
Glyma.04G186500 Glycine max HOM05D007081 ORTHO05D008834 2.6e-30 136.7 117 63.2
MELO3C026274.2 Cucumis melo HOM05D007081 ORTHO05D008834 3.4e-30 136.3 144 52.8
vmacro16631 Vaccinium macrocarpon HOM05D007081 ORTHO05D008834 3.4e-30 136.3 100 68.0
Cc04_g12600 Coffea canephora HOM05D007081 ORTHO05D008834 5.7e-30 135.6 110 63.6
COL.COLO4_30124 Corchorus olitorius HOM05D007081 ORTHO05D008834 5.7e-30 135.6 139 52.5
SGA_v2.0_scaffold90G27870 Striga asiatica HOM05D007081 ORTHO05D008834 5.7e-30 135.6 142 54.2
Medtr3g077300 Medicago truncatula HOM05D007081 ORTHO05D008834 9.7e-30 134.8 114 63.2
Sp7g31890 Schrenkiella parvula HOM05D007081 ORTHO05D008834 1.3e-29 134.4 106 62.3
Sed0005220 Sechium edule HOM05D007081 ORTHO05D008834 1.3e-29 134.4 106 63.2
Dinv38554 Davidia involucrata HOM05D007081 ORTHO05D008834 2.2e-29 133.7 115 60.0
THA.LOC104809251 Tarenaya hassleriana HOM05D007081 ORTHO05D008834 2.2e-29 133.7 113 61.1
Thhalv10025133m.g Eutrema salsugineum HOM05D007081 ORTHO05D008834 2.8e-29 133.3 120 56.7
Sc04g0001640 Simmondsia chinensis HOM05D007081 ORTHO05D008834 3.7e-29 132.9 111 62.2
Carub.0007s0626 Capsella rubella HOM05D007081 ORTHO05D008834 4.8e-29 132.5 110 61.8
Lj1g0004270 Lotus japonicus HOM05D007081 ORTHO05D008834 4.8e-29 132.5 101 68.3
Lj5A128T65 Lonicera japonica HOM05D007081 ORTHO05D008834 8.3e-29 131.7 101 66.3
Hund02770 Selenicereus undatus HOM05D007081 ORTHO05D008834 1.4e-28 131.0 111 64.9
ATR1152G054 Amborella trichopoda HOM05D007081 ORTHO05D008834 1.8e-28 130.6 106 65.1
CARHR242710 Cardamine hirsuta HOM05D007081 ORTHO05D008834 1.8e-28 130.6 110 61.8
PGR044G1978 Punica granatum HOM05D007081 ORTHO05D008834 1.8e-28 130.6 134 53.0
Rhsim12G0166600 Rhododendron simsii HOM05D007081 ORTHO05D008834 1.8e-28 130.6 110 60.9
AL7G17230 Arabidopsis lyrata HOM05D007081 ORTHO05D008834 2.4e-28 130.2 114 59.6
Eucgr.K02814 Eucalyptus grandis HOM05D007081 ORTHO05D008834 3.1e-28 129.8 107 60.7
Gorai.005G133700 Gossypium raimondii HOM05D007081 ORTHO05D008834 3.1e-28 129.8 119 60.5
arahy.Tifrunner.gnm1.ann1.4N1ELM Arachis hypogaea HOM05D007081 ORTHO05D008834 4.1e-28 129.4 115 60.0
Oeu040853.3 Olea europaea HOM05D007081 ORTHO05D008834 4.1e-28 129.4 102 64.7
ECA247G4072 Erigeron canadensis HOM05D007081 ORTHO05D008834 5.3e-28 129.0 103 65.0
Nitab4.5_0010304g0020 Nicotiana tabacum HOM05D007081 ORTHO05D008834 5.3e-28 129.0 113 59.3
Solyc03g112510.2 Solanum lycopersicum HOM05D007081 ORTHO05D008834 5.3e-28 129.0 118 58.5
Sopen03g031570 Solanum pennellii HOM05D007081 ORTHO05D008834 5.3e-28 129.0 118 58.5
PSO063G2349 Papaver somniferum HOM05D007081 ORTHO05D008834 7.0e-28 128.6 117 59.8
DCAR_016469 Daucus carota HOM05D007081 ORTHO05D008834 1.6e-27 127.5 104 63.5
Gohir.D02G120200 Gossypium hirsutum HOM05D007081 ORTHO05D008834 2.7e-27 126.7 119 58.8
Aqoxy3G02825 Aquilegia oxysepala HOM05D007081 ORTHO05D008834 3.5e-27 126.3 111 59.5
AUR62028747 Chenopodium quinoa HOM05D007081 ORTHO05D008834 3.5e-27 126.3 101 64.4
Migut.O00134 Erythranthe guttata HOM05D007081 ORTHO05D008834 3.5e-27 126.3 108 61.1
PSO832G3615 Papaver somniferum HOM05D007081 ORTHO05D008834 3.5e-27 126.3 117 59.0
AT4G34140 Arabidopsis thaliana HOM05D007081 ORTHO05D008834 4.5e-27 125.9 110 59.1
PGSC0003DMG400018175 Solanum tuberosum HOM05D007081 ORTHO05D008834 4.5e-27 125.9 109 61.5
CAN.G338.9 Capsicum annuum HOM05D007081 ORTHO05D008834 1.0e-26 124.8 109 61.5
Nitab4.5_0001284g0100 Nicotiana tabacum HOM05D007081 ORTHO05D008834 1.0e-26 124.8 109 59.6
HanXRQChr04g0101311 Helianthus annuus HOM05D007081 ORTHO05D008834 5.0e-26 122.5 104 62.5
EL10Ac5g10689 Beta vulgaris HOM05D007081 ORTHO05D008834 8.5e-26 121.7 101 63.4
BraA01t00418Z Brassica rapa HOM05D007081 ORTHO05D008834 8.5e-26 121.7 101 61.4
Aa31LG2G16580 Aethionema arabicum HOM05D007081 ORTHO05D008834 1.9e-25 120.6 108 59.3
unitig_26.g9614 Utricularia gibba HOM05D007081 ORTHO05D008834 1.9e-25 120.6 95 63.2
Peaxi162Scf00089g01519 Petunia axillaris HOM05D007081 ORTHO05D008834 4.2e-25 119.4 103 62.1
Lsat_1_v5_gn_1_28080 Lactuca sativa HOM05D007081 ORTHO05D008834 7.2e-25 118.6 113 58.4
C01p04690 Brassica napus HOM05D007081 ORTHO05D008834 2.1e-24 117.1 97 60.8
BolC1t00453H Brassica oleracea HOM05D007081 ORTHO05D008834 2.1e-24 117.1 97 60.8
A01p04290 Brassica napus HOM05D007081 ORTHO05D008834 4.7e-24 115.9 97 60.8
AUR62008170 Chenopodium quinoa HOM05D007081 ORTHO05D008834 1.2e-22 111.3 94 62.8
CDE06G1300 Ceratophyllum demersum HOM05D007081 ORTHO05D008834 3.4e-22 109.8 132 49.2
CsaV3_1G001260 Cucumis sativus L. HOM05D007081 ORTHO05D008834 1.3e-21 107.8 124 50.0
HPP92_000312 Vanilla planifolia HOM05D007081 ORTHO05D008834 2.4e-20 103.6 157 42.0
HPP92_000304 Vanilla planifolia HOM05D007081 ORTHO05D008834 3.1e-20 103.2 102 52.9
HPP92_000296 Vanilla planifolia HOM05D007081 ORTHO05D008834 9.1e-20 101.7 107 51.4
Os01g0170100 Oryza sativa ssp. japonica HOM05D007081 ORTHO05D008834 2.5e-17 93.6 121 44.6
Glyma.06G179301 Glycine max HOM05D007081 ORTHO05D008834 5.5e-17 92.4 86 61.6
CBR_g4092 Chara braunii HOM05D007081 ORTHO05D000048 9.5e-17 91.7 103 46.6
ClCG06G017230 Citrullus lanatus HOM05D007081 ORTHO05D008834 9.5e-17 91.7 173 36.4
SGA_v2.0_scaffold90G27873 Striga asiatica HOM05D007081 ORTHO05D008834 9.5e-17 91.7 108 52.8
AagrBONN_evm.TU.Sc2ySwM_117.2172 Anthoceros agrestis HOM05D007081 ORTHO05D008834 1.2e-16 91.3 104 48.1
Pp3c25_4990 Physcomitrium patens HOM05D007081 ORTHO05D008834 2.8e-16 90.1 124 46.0
Zm00001eb122970 Zea mays HOM05D007081 ORTHO05D008834 4.0e-15 86.3 102 47.1
Mapoly0102s0046 Marchantia polymorpha HOM05D007081 ORTHO05D008834 6.8e-15 85.5 104 50.0
arahy.Tifrunner.gnm1.ann1.G5F0QK Arachis hypogaea HOM05D007081 ORTHO05D008834 9.8e-14 81.6 86 54.7
Ah.02g110780 Amaranthus hybridus HOM05D007081 ORTHO05D008834 1.2e-11 74.7 75 58.7
SMO367G0074 Selaginella moellendorffii HOM05D005384 ORTHO05D006477 1.0e-10 71.6 100 44.0
SEGI_13994 Sequoiadendron giganteum HOM05D007081 ORTHO05D008834 3.9e-10 69.7 73 53.4
SEGI_21151 Sequoiadendron giganteum HOM05D007081 ORTHO05D008834 3.9e-10 69.7 73 53.4
ECA246G0264 Erigeron canadensis HOM05D005384 ORTHO05D006477 9.5e-09 65.1 134 35.8
Actinidia22110 Actinidia chinensis HOM05D005384 ORTHO05D006477 1.6e-08 64.3 109 36.7
arahy.Tifrunner.gnm1.ann1.JE9H0F Arachis hypogaea HOM05D007081 ORTHO05D008834 4.7e-08 62.8 68 54.4
Lalb_Chr05g0228951 Lupinus albus HOM05D005384 ORTHO05D006477 1.8e-07 60.8 134 33.6
Manes.02G081900 Manihot esculenta HOM05D005384 ORTHO05D006477 2.3e-07 60.5 135 33.3
SGA_v2.0_scaffold14G06795 Striga asiatica HOM05D005384 ORTHO05D006477 2.3e-07 60.5 127 33.9
Oeu054547.2 Olea europaea HOM05D005384 ORTHO05D006477 4.0e-07 59.7 131 33.6
PSO782G4681 Papaver somniferum HOM05D005384 ORTHO05D006477 4.0e-07 59.7 134 31.3
vmacro14142 Vaccinium macrocarpon HOM05D005384 ORTHO05D006477 4.0e-07 59.7 131 35.9
Potri.004G081800 Populus trichocarpa HOM05D005384 ORTHO05D006477 5.2e-07 59.3 123 33.3
Dinv07851 Davidia involucrata HOM05D005384 ORTHO05D006477 6.8e-07 58.9 133 30.8
Nitab4.5_0002055g0100 Nicotiana tabacum HOM05D005384 ORTHO05D006477 6.8e-07 58.9 121 34.7
Potri.017G138500 Populus trichocarpa HOM05D005384 ORTHO05D006477 6.8e-07 58.9 124 34.7
Migut.E00282 Erythranthe guttata HOM05D005384 ORTHO05D006477 8.9e-07 58.5 126 33.3
FAN01G0265 Fragaria x ananassa HOM05D005384 ORTHO05D006477 8.9e-07 58.5 126 32.5
arahy.Tifrunner.gnm1.ann1.EB4ABC Arachis hypogaea HOM05D005384 ORTHO05D006477 1.2e-06 58.2 130 33.1
arahy.Tifrunner.gnm1.ann1.R6E3N5 Arachis hypogaea HOM05D005384 ORTHO05D006477 1.2e-06 58.2 130 33.1
ClCG01G008440 Citrullus lanatus HOM05D005384 ORTHO05D006477 1.2e-06 58.2 132 31.8
MELO3C025104.2 Cucumis melo HOM05D005384 ORTHO05D006477 1.2e-06 58.2 132 31.8
DCAR_016228 Daucus carota HOM05D005384 ORTHO05D006477 1.2e-06 58.2 130 34.6
PSO063G3637 Papaver somniferum HOM05D005384 ORTHO05D006477 1.2e-06 58.2 134 30.6
CSS0046614 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 1.5e-06 57.8 133 32.3
Lalb_Chr16g0391981 Lupinus albus HOM05D005384 ORTHO05D006477 1.5e-06 57.8 127 32.3
Nitab4.5_0009567g0040 Nicotiana tabacum HOM05D005384 ORTHO05D006477 1.5e-06 57.8 123 36.6
Sed0018353 Sechium edule HOM05D005384 ORTHO05D006477 1.5e-06 57.8 132 31.8
TPR.G28963 Trifolium pratense HOM05D005384 ORTHO05D006477 1.5e-06 57.8 134 31.3
ATR0743G115 Amborella trichopoda HOM05D005384 ORTHO05D006477 2.0e-06 57.4 106 36.8
Ciclev10010959m.g Citrus clementina HOM05D005384 ORTHO05D006477 2.0e-06 57.4 123 31.7
Medtr8g070990 Medicago truncatula HOM05D005384 ORTHO05D006477 2.0e-06 57.4 134 31.3
RcHm_v2.0_Chr1g0329501 Rosa chinensis HOM05D005384 ORTHO05D006477 2.0e-06 57.4 126 32.5
Sabra04G0054400 Salix brachista HOM05D005384 ORTHO05D006477 2.0e-06 57.4 127 33.9
unitig_21.g20863 Utricularia gibba HOM05D005384 ORTHO05D006477 2.6e-06 57.0 134 32.8
MSTRG.2272 Avicennia marina HOM05D005384 ORTHO05D006477 3.4e-06 56.6 132 33.3
EL10Ac8g19736 Beta vulgaris HOM05D005384 ORTHO05D006477 3.4e-06 56.6 129 31.8
Lsat_1_v5_gn_3_16520 Lactuca sativa HOM05D005384 ORTHO05D006477 3.4e-06 56.6 137 35.0
Peaxi162Scf00084g00818 Petunia axillaris HOM05D005384 ORTHO05D006477 3.4e-06 56.6 121 33.9
PGR042G2720 Punica granatum HOM05D005384 ORTHO05D006477 3.4e-06 56.6 144 33.3
QL02p064091 Quercus lobata HOM05D005384 ORTHO05D006477 3.4e-06 56.6 127 33.9
FvH4_7g04410 Fragaria vesca HOM05D005384 ORTHO05D006477 4.4e-06 56.2 126 31.7
FAN03G3298 Fragaria x ananassa HOM05D005384 ORTHO05D006477 4.4e-06 56.2 126 31.7
FAN06G1991 Fragaria x ananassa HOM05D005384 ORTHO05D006477 4.4e-06 56.2 126 31.7
FAN10G2966 Fragaria x ananassa HOM05D005384 ORTHO05D006477 4.4e-06 56.2 126 31.7
Glyma.16G102300 Glycine max HOM05D005384 ORTHO05D006477 4.4e-06 56.2 134 30.6
Aqoxy3G02532 Aquilegia oxysepala HOM05D005384 ORTHO05D006477 5.8e-06 55.8 136 31.6
Cc04_g13050 Coffea canephora HOM05D005384 ORTHO05D006477 5.8e-06 55.8 120 33.3
HanXRQChr17g0535751 Helianthus annuus HOM05D005384 ORTHO05D006477 5.8e-06 55.8 123 35.0
Rhsim07G0122100 Rhododendron simsii HOM05D005384 ORTHO05D006477 5.8e-06 55.8 141 34.0
Aa31LG10G6030 Aethionema arabicum HOM05D005384 ORTHO05D006477 7.5e-06 55.5 131 34.4
Ah.14g086470 Amaranthus hybridus HOM05D005384 ORTHO05D006477 7.5e-06 55.5 130 32.3
Glyma.08G266700 Glycine max HOM05D005384 ORTHO05D006477 7.5e-06 55.5 135 31.9
Prupe.2G049800 Prunus persica HOM05D005384 ORTHO05D006477 7.5e-06 55.5 126 31.7
CDE12G0199 Ceratophyllum demersum HOM05D005384 ORTHO05D006477 9.8e-06 55.1 132 31.1
Haze_14319 Corylus avellana HOM05D005384 ORTHO05D006477 9.8e-06 55.1 123 31.7
Eucgr.J01644 Eucalyptus grandis HOM05D005384 ORTHO05D006477 9.8e-06 55.1 131 30.5


User provided reference genes

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