Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc31.23 Carica papaya HOM05D003499 ORTHO05D004754 5.8e-56 220.7 116 100.0
Atru.chr1.17 Acer truncatum HOM05D003499 ORTHO05D004754 8.2e-34 147.1 100 73.0
Ciclev10006542m.g Citrus clementina HOM05D003499 ORTHO05D004754 7.0e-33 144.1 97 74.2
BolC6t40336H Brassica oleracea HOM05D003499 ORTHO05D004754 1.2e-32 143.3 99 73.7
A07p44380 Brassica napus HOM05D003499 ORTHO05D004754 3.5e-32 141.7 99 71.7
C06p53180 Brassica napus HOM05D003499 ORTHO05D004754 4.5e-32 141.4 99 72.7
Duzib213G0086 Durio zibethinus HOM05D003499 ORTHO05D004754 1.0e-31 140.2 96 71.9
Gohir.D01G085300 Gossypium hirsutum HOM05D003499 ORTHO05D004754 1.3e-31 139.8 96 70.8
Gorai.002G110900 Gossypium raimondii HOM05D003499 ORTHO05D004754 1.3e-31 139.8 96 70.8
BcaB02g07209 Brassica carinata HOM05D003499 ORTHO05D004754 1.7e-31 139.4 99 70.7
BcaC08g45365 Brassica carinata HOM05D003499 ORTHO05D004754 1.7e-31 139.4 99 70.7
BolC6t38157H Brassica oleracea HOM05D003499 ORTHO05D004754 1.7e-31 139.4 99 70.7
CARHR072950 Cardamine hirsuta HOM05D003499 ORTHO05D004754 1.7e-31 139.4 99 71.7
Gohir.A01G100800 Gossypium hirsutum HOM05D003499 ORTHO05D004754 1.7e-31 139.4 96 70.8
A07p27200 Brassica napus HOM05D003499 ORTHO05D004754 2.2e-31 139.0 99 70.7
BraA07t30364Z Brassica rapa HOM05D003499 ORTHO05D004754 2.2e-31 139.0 99 70.7
Thhalv10017995m.g Eutrema salsugineum HOM05D003499 ORTHO05D004754 2.2e-31 139.0 99 69.7
TWI38G0606 Tripterygium wilfordii HOM05D003499 ORTHO05D004754 2.2e-31 139.0 99 69.7
C06p29970 Brassica napus HOM05D003499 ORTHO05D004754 3.8e-31 138.3 99 69.7
CANSAT56G3760 Cannabis sativa HOM05D003499 ORTHO05D004754 5.0e-31 137.9 99 70.7
BraA07t31947Z Brassica rapa HOM05D003499 ORTHO05D004754 6.5e-31 137.5 99 70.7
Nn7g38420 Nelumbo nucifera HOM05D003499 ORTHO05D004754 1.5e-30 136.3 99 70.7
Thecc.07G189900 Theobroma cacao HOM05D003499 ORTHO05D004754 1.9e-30 136.0 97 68.0
Sp5g34360 Schrenkiella parvula HOM05D003499 ORTHO05D004754 4.2e-30 134.8 99 67.7
Manes.16G052800 Manihot esculenta HOM05D003499 ORTHO05D004754 5.5e-30 134.4 99 65.7
Dinv19570 Davidia involucrata HOM05D003499 ORTHO05D004754 7.2e-30 134.0 99 66.7
QL04p095880 Quercus lobata HOM05D003499 ORTHO05D004754 9.4e-30 133.7 99 70.7
Carub.0002s2615 Capsella rubella HOM05D003499 ORTHO05D004754 1.2e-29 133.3 99 67.7
Prupe.4G125000 Prunus persica HOM05D003499 ORTHO05D004754 1.2e-29 133.3 99 66.7
Dinv42452 Davidia involucrata HOM05D003499 ORTHO05D004754 1.6e-29 132.9 99 67.7
Aa31LG4G1710 Aethionema arabicum HOM05D003499 ORTHO05D004754 4.7e-29 131.3 99 66.7
AT1G79280 Arabidopsis thaliana HOM05D003499 ORTHO05D004754 6.1e-29 131.0 99 67.7
CiPaw.15G111600 Carya illinoinensis HOM05D003499 ORTHO05D004754 1.0e-28 130.2 99 66.7
FAN16G2389 Fragaria x ananassa HOM05D003499 ORTHO05D004754 1.0e-28 130.2 99 64.6
Eucgr.F04480 Eucalyptus grandis HOM05D003499 ORTHO05D004754 2.3e-28 129.0 99 62.6
AL2G39880 Arabidopsis lyrata HOM05D003499 ORTHO05D004754 3.0e-28 128.6 99 65.7
CiPaw.16G079000 Carya illinoinensis HOM05D003499 ORTHO05D004754 3.0e-28 128.6 99 66.7
RcHm_v2.0_Chr5g0023031 Rosa chinensis HOM05D003499 ORTHO05D004754 5.2e-28 127.9 99 65.7
FAN25G2460 Fragaria x ananassa HOM05D003499 ORTHO05D004754 8.8e-28 127.1 99 64.6
HanXRQChr08g0213121 Helianthus annuus HOM05D003499 ORTHO05D004754 1.5e-27 126.3 99 62.6
HanXRQChr14g0459251 Helianthus annuus HOM05D003499 ORTHO05D004754 1.5e-27 126.3 99 60.6
Sc05g0008250 Simmondsia chinensis HOM05D003499 ORTHO05D004754 1.5e-27 126.3 99 62.6
ATR1127G224 Amborella trichopoda HOM05D003499 ORTHO05D004754 2.0e-27 125.9 99 61.6
MD10G1218600 Malus domestica HOM05D003499 ORTHO05D004754 2.0e-27 125.9 99 63.6
GSVIVG01036698001 Vitis vinifera HOM05D003499 ORTHO05D004754 2.0e-27 125.9 100 62.0
FAN21G2046 Fragaria x ananassa HOM05D003499 ORTHO05D004754 2.6e-27 125.6 99 63.6
Potri.008G080900 Populus trichocarpa HOM05D003499 ORTHO05D004754 3.3e-27 125.2 100 65.0
ECA233G1650 Erigeron canadensis HOM05D003499 ORTHO05D004754 5.7e-27 124.4 99 60.6
Lsat_1_v5_gn_8_41780 Lactuca sativa HOM05D003499 ORTHO05D004754 5.7e-27 124.4 99 60.6
Cc00_g09120 Coffea canephora HOM05D003499 ORTHO05D004754 7.4e-27 124.0 97 62.9
arahy.Tifrunner.gnm1.ann1.LW990M Arachis hypogaea HOM05D003499 ORTHO05D004754 1.3e-26 123.2 99 62.6
arahy.Tifrunner.gnm1.ann1.DHQL63 Arachis hypogaea HOM05D003499 ORTHO05D004754 2.2e-26 122.5 99 62.6
FvH4_3g13850 Fragaria vesca HOM05D003499 ORTHO05D004754 2.2e-26 122.5 99 62.6
FAN11G2210 Fragaria x ananassa HOM05D003499 ORTHO05D004754 2.2e-26 122.5 99 62.6
TPR.G3598 Trifolium pratense HOM05D003499 ORTHO05D004754 2.2e-26 122.5 99 61.6
Rhsim09G0000500 Rhododendron simsii HOM05D003499 ORTHO05D004754 2.8e-26 122.1 100 61.0
MD05G1240600 Malus domestica HOM05D003499 ORTHO05D004754 3.7e-26 121.7 99 60.6
AL2G39750 Arabidopsis lyrata HOM05D003499 ORTHO05D004754 6.3e-26 120.9 99 64.6
VMungo1080G1290 Vigna mungo HOM05D003499 ORTHO05D004754 1.8e-25 119.4 99 61.6
Ah.09g236940 Amaranthus hybridus HOM05D003499 ORTHO05D004754 2.4e-25 119.0 100 60.0
Phvul.005G045700 Phaseolus vulgaris HOM05D003499 ORTHO05D004754 2.4e-25 119.0 99 60.6
Glyma.15G265300 Glycine max HOM05D003499 ORTHO05D004754 3.1e-25 118.6 99 60.6
MBI02_g17882_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 3.1e-25 118.6 99 63.6
Psat0s13g0320 Pisum sativum HOM05D003499 ORTHO05D004754 4.1e-25 118.2 99 60.6
Actinidia26203 Actinidia chinensis HOM05D003499 ORTHO05D004754 5.3e-25 117.9 99 58.6
Lalb_Chr25g0284181 Lupinus albus HOM05D003499 ORTHO05D004754 5.3e-25 117.9 112 58.0
Medtr2g063480 Medicago truncatula HOM05D003499 ORTHO05D004754 5.3e-25 117.9 99 59.6
Lj3g0016310 Lotus japonicus HOM05D003499 ORTHO05D004754 1.2e-24 116.7 99 57.6
Glyma.08G162300 Glycine max HOM05D003499 ORTHO05D004754 1.6e-24 116.3 99 59.6
Sabra08G0060200 Salix brachista HOM05D003499 ORTHO05D004754 2.0e-24 115.9 98 61.2
SGA_v2.0_scaffold239G43999 Striga asiatica HOM05D003499 ORTHO05D004754 2.0e-24 115.9 112 58.0
Lalb_Chr01g0015591 Lupinus albus HOM05D003499 ORTHO05D004754 3.5e-24 115.2 99 58.6
AUR62012541 Chenopodium quinoa HOM05D003499 ORTHO05D004754 5.9e-24 114.4 98 60.2
AUR62014655 Chenopodium quinoa HOM05D003499 ORTHO05D004754 5.9e-24 114.4 98 60.2
AUR62044736 Chenopodium quinoa HOM05D003499 ORTHO05D004754 5.9e-24 114.4 98 60.2
ClCG09G022890 Citrullus lanatus HOM05D003499 ORTHO05D004754 7.7e-24 114.0 99 56.6
PSO675G8338 Papaver somniferum HOM05D003499 ORTHO05D004754 1.0e-23 113.6 99 55.6
PGR031G3814 Punica granatum HOM05D003499 ORTHO05D004754 3.8e-23 111.7 98 59.2
CsaV3_7G023140 Cucumis sativus L. HOM05D003499 ORTHO05D004754 5.0e-23 111.3 99 54.5
Sed0001737 Sechium edule HOM05D003499 ORTHO05D004754 8.5e-23 110.5 99 55.6
CAN.G374.15 Capsicum annuum HOM05D003499 ORTHO05D004754 1.9e-22 109.4 100 55.0
Nitab4.5_0002333g0110 Nicotiana tabacum HOM05D003499 ORTHO05D004754 3.2e-22 108.6 100 56.0
Oeu025990.2 Olea europaea HOM05D003499 ORTHO05D004754 7.2e-22 107.5 100 59.0
Solyc06g053570.2 Solanum lycopersicum HOM05D003499 ORTHO05D004754 9.4e-22 107.1 100 54.0
MELO3C012602.2 Cucumis melo HOM05D003499 ORTHO05D004754 2.7e-21 105.5 97 53.6
Sopen06g018680 Solanum pennellii HOM05D003499 ORTHO05D004754 2.7e-21 105.5 100 53.0
Hund21305 Selenicereus undatus HOM05D003499 ORTHO05D004754 3.6e-21 105.1 99 53.5
PGSC0003DMG400016328 Solanum tuberosum HOM05D003499 ORTHO05D004754 3.6e-21 105.1 100 54.0
MSTRG.14572 Avicennia marina HOM05D003499 ORTHO05D004754 1.0e-20 103.6 99 54.5
HPP92_017337 Vanilla planifolia HOM05D003499 ORTHO05D004754 1.8e-20 102.8 99 52.5
THA.LOC104813306 Tarenaya hassleriana HOM05D003499 ORTHO05D004754 4.4e-19 98.2 99 52.5
Aqoxy1G01362 Aquilegia oxysepala HOM05D003499 ORTHO05D004754 6.3e-18 94.4 65 67.7
EL10Ac8g19951 Beta vulgaris HOM05D003499 ORTHO05D004754 8.3e-18 94.0 100 51.0
Mapoly0042s0082 Marchantia polymorpha HOM05D003499 ORTHO05D004754 2.2e-15 85.9 99 47.5
PSO541G3284 Papaver somniferum HOM05D003499 ORTHO05D004754 2.5e-14 82.4 99 43.4
COL.COLO4_25003 Corchorus olitorius HOM05D003499 ORTHO05D004754 3.2e-14 82.0 101 48.5
Mapoly2166s0001 Marchantia polymorpha HOM05D003499 ORTHO05D004754 5.5e-14 81.3 97 44.3
AagrBONN_evm.TU.Sc2ySwM_344.3653 Anthoceros agrestis HOM05D003499 ORTHO05D004754 1.2e-13 80.1 99 43.4
Pp3c8_8020 Physcomitrium patens HOM05D003499 ORTHO05D004754 4.7e-13 78.2 99 43.4
Haze_18469 Corylus avellana HOM05D003499 ORTHO05D004754 1.4e-12 76.6 118 42.4
CDE02G3941 Ceratophyllum demersum HOM05D003499 ORTHO05D004754 3.4e-11 72.0 118 42.4
Zm00001eb194730 Zea mays HOM05D003499 ORTHO05D004754 4.4e-11 71.6 61 60.7
SEGI_36052 Sequoiadendron giganteum HOM05D003499 ORTHO05D004754 7.5e-11 70.9 99 39.4
Ca_03377_v3 Cicer arietinum L. HOM05D003499 ORTHO05D004754 1.7e-10 69.7 116 41.4
CBR_g33916 Chara braunii HOM05D003499 ORTHO05D004754 6.3e-10 67.8 99 39.4
vmacro21307 Vaccinium macrocarpon HOM05D003499 ORTHO05D004754 1.8e-09 66.2 88 44.3
SMO203G0250 Selaginella moellendorffii HOM05D003499 ORTHO05D004754 5.4e-09 64.7 99 39.4
Migut.H01651 Erythranthe guttata HOM05D003499 ORTHO05D004754 7.0e-09 64.3 99 39.4
unitig_578.g16338 Utricularia gibba HOM05D003499 ORTHO05D004754 7.0e-09 64.3 99 38.4
HPP92_017349 Vanilla planifolia HOM05D003499 ORTHO05D004754 1.7e-07 59.7 77 42.9


User provided reference genes

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