Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 3.5e-200 701.4 363 100.0
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 2.9e-170 602.1 412 76.7
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 8.5e-170 600.5 412 76.9
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 1.1e-169 600.1 412 76.2
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 7.2e-169 597.4 412 76.5
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 4.7e-168 594.7 407 76.7
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 5.2e-167 591.3 412 75.7
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 2.6e-166 589.0 412 75.7
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 1.7e-165 586.3 414 75.6
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 3.7e-165 585.1 412 75.0
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 3.7e-165 585.1 407 74.9
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 4.8e-165 584.7 412 74.5
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 1.1e-164 583.6 412 74.3
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 1.4e-164 583.2 412 74.0
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 1.8e-164 582.8 409 75.1
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 3.1e-164 582.0 412 73.5
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 3.1e-164 582.0 412 74.5
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 7.0e-164 580.9 412 74.8
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 1.2e-163 580.1 412 74.5
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 1.2e-163 580.1 412 74.5
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 1.2e-163 580.1 412 74.8
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 1.6e-163 579.7 409 75.3
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 5.9e-163 577.8 411 74.5
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 1.3e-162 576.6 412 73.5
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 1.7e-162 576.2 412 74.0
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 2.2e-162 575.9 412 73.5
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 3.8e-162 575.1 412 73.3
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 1.5e-161 573.2 411 73.7
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 1.5e-161 573.2 443 68.8
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 3.2e-161 572.0 412 72.3
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 9.4e-161 570.5 412 72.6
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 4.7e-160 568.2 411 72.0
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 6.1e-160 567.8 412 72.6
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 1.0e-159 567.0 408 74.0
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 1.4e-159 566.6 411 73.0
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 1.8e-159 566.2 412 71.8
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.3e-159 565.8 412 71.8
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 5.2e-159 564.7 412 72.3
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 5.2e-159 564.7 411 72.7
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 5.2e-159 564.7 406 72.9
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 8.8e-159 563.9 412 71.6
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.0e-158 562.8 412 71.4
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 2.6e-158 562.4 412 71.1
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 4.4e-158 561.6 411 71.8
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 1.3e-157 560.1 409 72.4
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 2.8e-157 558.9 411 72.5
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 3.7e-157 558.5 411 71.5
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 3.7e-157 558.5 411 70.8
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 6.3e-157 557.8 411 72.0
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 6.3e-157 557.8 407 72.2
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 1.1e-156 557.0 411 72.3
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 1.1e-156 557.0 411 72.0
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 1.8e-156 556.2 411 71.8
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 1.8e-156 556.2 411 71.8
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 1.8e-156 556.2 411 71.0
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 2.4e-156 555.8 412 71.4
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 2.4e-156 555.8 410 71.7
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.1e-156 555.4 411 71.8
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 7.0e-156 554.3 411 72.0
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 2.0e-155 552.7 410 71.2
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 3.5e-155 552.0 412 70.1
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 7.7e-155 550.8 411 71.3
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 7.7e-155 550.8 411 71.8
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 1.3e-154 550.1 411 70.6
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 1.7e-154 549.7 411 70.3
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 2.9e-154 548.9 418 70.6
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 2.9e-154 548.9 412 70.1
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 3.8e-154 548.5 412 70.1
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 6.5e-154 547.7 411 71.3
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 6.5e-154 547.7 412 69.4
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 1.9e-153 546.2 411 70.6
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 1.9e-153 546.2 387 73.4
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 1.9e-153 546.2 410 71.2
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 1.2e-152 543.5 423 70.0
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 1.2e-152 543.5 423 70.0
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 2.1e-152 542.7 423 69.7
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 1.0e-151 540.4 412 69.4
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 1.4e-151 540.0 418 69.1
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 8.8e-151 537.3 413 69.2
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 3.4e-150 535.4 413 69.5
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 4.4e-150 535.0 413 69.7
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 5.7e-150 534.6 411 69.3
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 9.8e-150 533.9 410 69.8
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 3.7e-149 531.9 429 68.1
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 1.8e-148 529.6 413 68.0
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 5.9e-147 524.6 438 66.0
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 1.3e-146 523.5 413 68.0
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 2.3e-146 522.7 375 73.9
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 2.3e-146 522.7 371 74.7
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 6.5e-146 521.2 411 69.1
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 4.1e-140 501.9 413 63.9
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 1.6e-139 500.0 412 65.0
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 2.0e-139 499.6 369 72.6
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 9.5e-137 490.7 411 60.8
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 5.2e-135 485.0 415 64.1
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 6.8e-135 484.6 392 67.3
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 1.2e-131 473.8 410 61.2
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 3.0e-130 469.2 410 61.7
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 5.2e-127 458.4 461 59.9
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 1.4e-124 450.3 371 66.6
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 7.8e-123 444.5 403 58.1
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 1.9e-121 439.9 317 73.2
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 7.1e-116 421.4 398 56.3
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 3.9e-114 415.6 405 53.1
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 9.2e-108 394.4 406 51.7
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 6.9e-103 378.3 305 66.6
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 9.9e-102 374.4 296 67.2
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 6.4e-101 371.7 279 71.3
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 4.2e-100 369.0 279 71.0
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 2.4e-92 343.2 257 72.0
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 2.7e-91 339.7 267 66.3
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 4.2e-84 315.8 256 65.2
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 8.7e-82 308.1 313 55.6
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 8.2e-80 301.6 285 56.8
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 2.6e-78 296.6 184 79.3
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 5.5e-76 288.9 402 42.3
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 7.1e-76 288.5 172 85.5
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 2.2e-72 276.9 249 65.9
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 2.0e-70 270.4 284 53.9
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.4e-62 243.0 184 67.9
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 7.4e-57 225.3 129 86.8
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 1.6e-51 207.6 199 58.3
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 3.9e-50 203.0 121 78.5
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 8.8e-50 201.8 176 63.6
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 2.6e-49 200.3 124 82.3
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 1.6e-46 191.0 205 54.1
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.0e-46 190.7 188 61.2
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.7e-45 187.6 161 65.2
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.6e-43 179.9 177 57.6
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 4.7e-43 179.5 362 35.6
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 6.1e-43 179.1 399 31.8
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 3.0e-42 176.8 102 81.4
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 1.7e-40 171.0 404 30.7
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 2.5e-36 157.1 323 30.3
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 1.6e-35 154.5 83 86.7
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 2.7e-35 153.7 114 67.5
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 2.3e-34 150.6 107 67.3
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.0e-34 150.2 204 48.0
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.1e-31 140.2 94 75.5
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 1.5e-25 121.3 115 60.0
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 5.8e-17 92.8 99 55.6
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 9.8e-17 92.0 49 85.7
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 2.2e-16 90.9 127 51.2
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 1.4e-15 88.2 143 46.2
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 1.2e-14 85.1 53 75.5
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 2.7e-14 84.0 54 85.2
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 1.3e-13 81.6 146 44.5
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.9e-12 77.8 71 60.6
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.3e-12 76.6 48 77.1
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 2.8e-11 73.9 106 48.1
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 2.9e-08 63.9 38 78.9
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 2.4e-07 60.8 56 60.7


User provided reference genes

Program Settings