Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc26.169 Carica papaya HOM05D001537 ORTHO05D017787 0.0e+00 1115.9 569 100.0
Atru.chr13.115 Acer truncatum HOM05D001537 ORTHO05D002595 9.4e-107 391.7 570 44.7
QL02p014921 Quercus lobata HOM05D001537 ORTHO05D002595 2.0e-101 374.0 589 41.6
Dinv31961 Davidia involucrata HOM05D001537 ORTHO05D002595 9.4e-99 365.2 566 42.4
THA.LOC104811474 Tarenaya hassleriana HOM05D001537 ORTHO05D002595 8.0e-98 362.1 561 42.2
Sabra02G0006500 Salix brachista HOM05D001537 ORTHO05D002595 2.6e-96 357.1 566 42.0
Potri.002G008700 Populus trichocarpa HOM05D001537 ORTHO05D002595 3.7e-95 353.2 565 42.8
Thecc.08G061900 Theobroma cacao HOM05D001537 ORTHO05D002595 3.7e-95 353.2 556 43.0
Ciclev10000045m.g Citrus clementina HOM05D001537 ORTHO05D002595 8.2e-95 352.1 570 41.8
Haze_22823 Corylus avellana HOM05D001537 ORTHO05D002595 2.0e-93 347.4 601 39.6
Actinidia17058 Actinidia chinensis HOM05D001537 ORTHO05D002595 3.8e-92 343.2 559 41.0
CSS0018686 Camellia sinensis var. sinensis HOM05D001537 ORTHO05D002595 2.1e-90 337.4 552 40.4
Prupe.5G009400 Prunus persica HOM05D001537 ORTHO05D002595 2.7e-85 320.5 569 39.5
GSVIVG01013389001 Vitis vinifera HOM05D001537 ORTHO05D002595 1.9e-83 314.3 537 40.8
CARHR021170 Cardamine hirsuta HOM05D001537 ORTHO05D002595 1.2e-82 311.6 543 39.6
Rhsim06G0005400 Rhododendron simsii HOM05D001537 ORTHO05D002595 1.0e-81 308.5 552 39.1
Carub.0001s2019 Capsella rubella HOM05D001537 ORTHO05D002595 6.8e-81 305.8 547 39.3
AL1G33710 Arabidopsis lyrata HOM05D001537 ORTHO05D002595 1.2e-80 305.1 542 39.5
Duzib093G0377 Durio zibethinus HOM05D001537 ORTHO05D002595 5.7e-80 302.8 561 39.2
Manes.18G003801 Manihot esculenta HOM05D001537 ORTHO05D002595 2.8e-79 300.4 568 39.6
AT1G20720 Arabidopsis thaliana HOM05D001537 ORTHO05D002595 1.1e-78 298.5 541 40.9
MD16G1283500 Malus domestica HOM05D001537 ORTHO05D002595 3.6e-74 283.5 569 37.1
FAN08G0357 Fragaria x ananassa HOM05D001537 ORTHO05D002595 1.4e-73 281.6 571 37.1
RcHm_v2.0_Chr7g0215861 Rosa chinensis HOM05D001537 ORTHO05D002595 1.8e-73 281.2 572 37.4
FAN13G0321 Fragaria x ananassa HOM05D001537 ORTHO05D002595 3.0e-73 280.4 571 37.1
Gohir.D05G181700 Gossypium hirsutum HOM05D001537 ORTHO05D002595 5.8e-72 276.2 557 37.0
Lj4A808G42 Lonicera japonica HOM05D001537 ORTHO05D002595 5.8e-72 276.2 492 39.8
Gorai.009G186700 Gossypium raimondii HOM05D001537 ORTHO05D002595 1.3e-71 275.0 557 36.6
TWI56G1355 Tripterygium wilfordii HOM05D001537 ORTHO05D002595 6.4e-71 272.7 567 36.3
Gohir.A05G178300 Gossypium hirsutum HOM05D001537 ORTHO05D002595 7.0e-70 269.2 557 35.9
Aa31LG7G4910 Aethionema arabicum HOM05D001537 ORTHO05D002595 1.0e-68 265.4 542 37.6
C05p19320 Brassica napus HOM05D001537 ORTHO05D002595 1.0e-68 265.4 551 36.5
BolC5t30633H Brassica oleracea HOM05D001537 ORTHO05D002595 1.7e-68 264.6 543 35.7
BraA06t24777Z Brassica rapa HOM05D001537 ORTHO05D002595 3.9e-68 263.5 545 37.1
FAN18G0587 Fragaria x ananassa HOM05D001537 ORTHO05D002595 1.1e-67 261.9 572 36.4
A06p16720 Brassica napus HOM05D001537 ORTHO05D002595 3.3e-67 260.4 545 36.5
Sc15g0004240 Simmondsia chinensis HOM05D001537 ORTHO05D002595 5.2e-65 253.1 575 35.8
Carub.0001s2020 Capsella rubella HOM05D001537 ORTHO05D002595 3.4e-64 250.4 508 36.2
CANSAT25G3097 Cannabis sativa HOM05D001537 ORTHO05D002595 9.8e-64 248.8 568 35.4
FvH4_5g25570 Fragaria vesca HOM05D001537 ORTHO05D002595 4.1e-62 243.4 531 36.5
Cc00_g25330 Coffea canephora HOM05D001537 ORTHO05D002595 1.3e-60 238.4 567 34.2
Thhalv10009302m.g Eutrema salsugineum HOM05D001537 ORTHO05D002595 1.3e-60 238.4 501 36.5
Lalb_Chr03g0033681 Lupinus albus HOM05D001537 ORTHO05D002595 1.3e-60 238.4 557 34.5
PGR031G0149 Punica granatum HOM05D001537 ORTHO05D002595 1.7e-60 238.0 542 36.5
Sp1g18440 Schrenkiella parvula HOM05D001537 ORTHO05D002595 3.0e-60 237.3 555 35.7
Hma1.2p1_0612F.1_g188850 Hydrangea macrophylla HOM05D001537 ORTHO05D002595 3.9e-60 236.9 526 33.7
DCAR_022967 Daucus carota HOM05D001537 ORTHO05D002595 5.6e-59 233.0 567 33.3
ClCG11G018810 Citrullus lanatus HOM05D001537 ORTHO05D002595 1.1e-57 228.8 568 33.1
Nn6g31690 Nelumbo nucifera HOM05D001537 ORTHO05D002595 1.5e-56 224.9 541 33.5
MBI05_g14353_MAGBIO Magnolia biondii HOM05D001537 ORTHO05D002595 2.0e-56 224.6 562 32.6
Eucgr.F03572 Eucalyptus grandis HOM05D001537 ORTHO05D002595 2.6e-56 224.2 566 31.6
Sed0022111 Sechium edule HOM05D001537 ORTHO05D002595 2.6e-56 224.2 566 32.9
CsaV3_4G037380 Cucumis sativus L. HOM05D001537 ORTHO05D002595 3.4e-56 223.8 568 32.2
MELO3C017033.2 Cucumis melo HOM05D001537 ORTHO05D002595 1.3e-55 221.9 568 33.5
PSO210G4823 Papaver somniferum HOM05D001537 ORTHO05D002595 4.9e-55 219.9 585 32.0
Sopen10g030160 Solanum pennellii HOM05D001537 ORTHO05D002595 6.4e-55 219.5 569 33.4
TPR.G26416 Trifolium pratense HOM05D001537 ORTHO05D002595 1.9e-54 218.0 563 34.1
Migut.O00316 Erythranthe guttata HOM05D001537 ORTHO05D002595 1.2e-53 215.3 555 31.9
Phvul.001G000600 Phaseolus vulgaris HOM05D001537 ORTHO05D002595 1.2e-53 215.3 561 33.9
Glyma.14G223700 Glycine max HOM05D001537 ORTHO05D002595 3.5e-53 213.8 544 34.4
Lj5g0001846 Lotus japonicus HOM05D001537 ORTHO05D002595 6.0e-53 213.0 559 33.6
AUR62042903 Chenopodium quinoa HOM05D001537 ORTHO05D002595 1.0e-52 212.2 565 32.9
Hund01784 Selenicereus undatus HOM05D001537 ORTHO05D002595 1.3e-52 211.8 570 31.6
AT1G20750 Arabidopsis thaliana HOM05D001537 ORTHO05D002595 3.9e-52 210.3 461 35.6
Nitab4.5_0004356g0020 Nicotiana tabacum HOM05D001537 ORTHO05D002595 6.6e-52 209.5 565 31.7
Psat6g000440 Pisum sativum HOM05D001537 ORTHO05D002595 6.6e-52 209.5 560 32.7
MSTRG.986 Avicennia marina HOM05D001537 ORTHO05D002595 1.5e-51 208.4 555 31.4
Aqoxy5G01007 Aquilegia oxysepala HOM05D001537 ORTHO05D002595 3.6e-50 203.8 576 32.1
VMungo0647G1246 Vigna mungo HOM05D001537 ORTHO05D002595 1.8e-49 201.4 593 31.4
AUR62035135 Chenopodium quinoa HOM05D001537 ORTHO05D002595 5.2e-49 199.9 565 31.9
Thhalv10006615m.g Eutrema salsugineum HOM05D001537 ORTHO05D002595 6.8e-49 199.5 519 31.8
Solyc10g079510.3 Solanum lycopersicum HOM05D001537 ORTHO05D002595 6.8e-49 199.5 513 32.9
EL10Ac1g01914 Beta vulgaris HOM05D001537 ORTHO05D002595 1.5e-48 198.4 569 32.0
COL.COLO4_07212 Corchorus olitorius HOM05D001537 ORTHO05D002595 1.5e-48 198.4 516 32.9
Nitab4.5_0000486g0210 Nicotiana tabacum HOM05D001537 ORTHO05D002595 5.8e-48 196.4 513 32.4
AL1G33740 Arabidopsis lyrata HOM05D001537 ORTHO05D002595 9.9e-48 195.7 312 44.2
Medtr1g026490 Medicago truncatula HOM05D001537 ORTHO05D002595 1.7e-47 194.9 561 32.3
arahy.Tifrunner.gnm1.ann1.UA1BSP Arachis hypogaea HOM05D001537 ORTHO05D002595 9.2e-46 189.1 591 31.6
SGA_v2.0_scaffold235G43685 Striga asiatica HOM05D001537 ORTHO05D002595 1.6e-45 188.3 549 30.6
Oeu029250.4 Olea europaea HOM05D001537 ORTHO05D002595 1.9e-43 181.4 536 30.8
Ah.11g041620 Amaranthus hybridus HOM05D001537 ORTHO05D002595 4.3e-43 180.3 563 32.3
arahy.Tifrunner.gnm1.ann1.74ZX0A Arachis hypogaea HOM05D001537 ORTHO05D002595 5.6e-43 179.9 560 30.9
BcaB07g32070 Brassica carinata HOM05D001537 ORTHO05D002595 5.3e-41 173.3 512 31.6
ECA238G0307 Erigeron canadensis HOM05D001537 ORTHO05D002595 6.4e-39 166.4 570 29.3
HanXRQChr06g0185181 Helianthus annuus HOM05D001537 ORTHO05D002595 1.2e-37 162.2 528 30.3
Ca_25241_v3 Cicer arietinum L. HOM05D001537 ORTHO05D002595 6.0e-37 159.8 506 30.6
Lsat_1_v5_gn_2_860 Lactuca sativa HOM05D001537 ORTHO05D002595 1.5e-35 155.2 523 30.0
vmacro21796 Vaccinium macrocarpon HOM05D001537 ORTHO05D002595 1.5e-35 155.2 217 42.9
Ca_14546_v3 Cicer arietinum L. HOM05D001537 ORTHO05D002595 9.0e-33 146.0 510 30.0
Lsat_1_v5_gn_2_1140 Lactuca sativa HOM05D001537 ORTHO05D002595 2.0e-32 144.8 520 29.0
C09p15070 Brassica napus HOM05D001537 ORTHO05D002595 5.4e-30 136.7 196 45.9
BolC9t54411H Brassica oleracea HOM05D001537 ORTHO05D002595 5.4e-30 136.7 196 45.9
SHI07968 Sapria himalayana HOM05D001537 ORTHO05D002595 1.2e-29 135.6 520 27.3
BraA09t36916Z Brassica rapa HOM05D001537 ORTHO05D002595 1.6e-29 135.2 196 46.4
TAR628G0210 Trochodendron aralioides HOM05D001537 ORTHO05D002595 4.3e-27 127.1 221 40.3
CARHR021180 Cardamine hirsuta HOM05D001537 ORTHO05D002595 7.4e-27 126.3 349 35.5
BcaNung04092 Brassica carinata HOM05D001537 ORTHO05D002595 1.3e-26 125.6 180 47.8
ATR0807G057 Amborella trichopoda HOM05D001537 ORTHO05D002595 4.2e-22 110.5 507 28.0
HanXRQChr06g0185191 Helianthus annuus HOM05D001537 ORTHO05D002595 4.2e-22 110.5 507 29.2
BcaC04g22810 Brassica carinata HOM05D001537 ORTHO05D002595 4.6e-21 107.1 169 45.6
TAR628G1155 Trochodendron aralioides HOM05D001537 ORTHO05D002595 1.3e-20 105.5 143 42.7
vmacro21795 Vaccinium macrocarpon HOM05D001537 ORTHO05D002595 9.0e-17 92.8 182 36.3
CiPaw.07G136300 Carya illinoinensis HOM05D001537 ORTHO05D002595 2.2e-15 88.2 181 37.0
HPP92_025944 Vanilla planifolia HOM05D001537 ORTHO05D002595 3.8e-15 87.4 507 24.7
A09p12720 Brassica napus HOM05D001537 ORTHO05D002595 1.4e-14 85.5 137 43.8
Zm00001eb320860 Zea mays HOM05D001537 ORTHO05D002595 1.4e-14 85.5 580 24.1
Gohir.D08G144650 Gossypium hirsutum HOM05D015849 ORTHO05D017787 7.1e-14 83.2 86 50.0
MELO3C017034.2 Cucumis melo HOM05D001537 ORTHO05D002595 9.3e-14 82.8 111 42.3
Gohir.D09G053002 Gossypium hirsutum HOM05D015849 ORTHO05D017787 2.1e-13 81.6 86 48.8
Gorai.002G134200 Gossypium raimondii HOM05D015849 ORTHO05D017787 6.0e-13 80.1 86 47.7
Gorai.002G149000 Gossypium raimondii HOM05D015849 ORTHO05D017787 6.0e-13 80.1 86 46.5
Gorai.013G104000 Gossypium raimondii HOM05D015849 ORTHO05D017787 1.0e-12 79.3 90 47.8
Gohir.D13G096800 Gossypium hirsutum HOM05D015849 ORTHO05D017787 2.3e-12 78.2 86 46.5
Gorai.004G149400 Gossypium raimondii HOM05D015849 ORTHO05D017787 2.3e-12 78.2 86 48.8
Gohir.D01G109575 Gossypium hirsutum HOM05D015849 ORTHO05D017787 3.0e-12 77.8 86 47.7
Glyma.17G262000 Glycine max HOM05D001537 ORTHO05D038924 3.3e-11 74.3 100 40.0
TAR628G1618 Trochodendron aralioides HOM05D001537 ORTHO05D002595 4.8e-10 70.5 96 46.9
AL1G33220 Arabidopsis lyrata HOM05D001537 ORTHO05D002595 1.5e-08 65.5 192 30.2
Gohir.D07G216400 Gossypium hirsutum HOM05D015849 ORTHO05D218547 2.0e-08 65.1 90 42.2
CARHR021190 Cardamine hirsuta HOM05D001537 ORTHO05D002595 3.4e-08 64.3 83 41.0
Os09g0551800 Oryza sativa ssp. japonica HOM05D001537 ORTHO05D002595 7.7e-08 63.2 478 26.2
CsaV3_4G037390 Cucumis sativus L. HOM05D001537 ORTHO05D002595 5.0e-07 60.5 63 46.0


User provided reference genes

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