Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc233.2 Carica papaya HOM05D002728 ORTHO05D002874 1.1e-53 213.0 102 100.0
Thecc.09G176600 Theobroma cacao HOM05D002728 ORTHO05D002874 2.8e-22 108.6 88 60.2
Sp3g01980 Schrenkiella parvula HOM05D002728 ORTHO05D002874 5.9e-20 100.9 81 63.0
Duzib150G0666 Durio zibethinus HOM05D002728 ORTHO05D002874 2.3e-19 99.0 87 54.0
THA.LOC104802929 Tarenaya hassleriana HOM05D002728 ORTHO05D002874 1.9e-18 95.9 78 59.0
CiPaw.07G192700 Carya illinoinensis HOM05D002728 ORTHO05D002874 3.3e-18 95.1 79 59.5
Atru.chr7.608 Acer truncatum HOM05D002728 ORTHO05D002874 3.6e-17 91.7 78 55.1
Actinidia17316 Actinidia chinensis HOM05D002728 ORTHO05D002874 3.6e-17 91.7 80 53.8
Manes.06G023550 Manihot esculenta HOM05D002728 ORTHO05D002874 3.6e-17 91.7 79 55.7
Carub.0003s0205 Capsella rubella HOM05D002728 ORTHO05D002874 4.7e-17 91.3 97 51.5
GSVIVG01029218001 Vitis vinifera HOM05D002728 ORTHO05D002874 6.1e-17 90.9 80 55.0
Actinidia38632 Actinidia chinensis HOM05D002728 ORTHO05D002874 8.0e-17 90.5 80 52.5
BcaNung03547 Brassica carinata HOM05D002728 ORTHO05D002874 8.0e-17 90.5 80 57.5
TAR383G0981 Trochodendron aralioides HOM05D002728 ORTHO05D002874 1.0e-16 90.1 82 53.7
Dinv42718 Davidia involucrata HOM05D002728 ORTHO05D002874 1.8e-16 89.4 80 52.5
Dinv43383 Davidia involucrata HOM05D002728 ORTHO05D002874 1.8e-16 89.4 80 52.5
TAR626G0658 Trochodendron aralioides HOM05D002728 ORTHO05D002874 1.8e-16 89.4 81 58.0
BNapus_Darmor_BZH_scaffold_129p00170 Brassica napus HOM05D002728 ORTHO05D002874 2.3e-16 89.0 80 56.2
BraA01t04606Z Brassica rapa HOM05D002728 ORTHO05D002874 2.3e-16 89.0 80 56.2
BolC1t05863H Brassica oleracea HOM05D002728 ORTHO05D002874 4.0e-16 88.2 80 56.2
Hma1.2p1_0155F.1_g068590 Hydrangea macrophylla HOM05D002728 ORTHO05D002874 4.0e-16 88.2 82 50.0
TWI63G0385 Tripterygium wilfordii HOM05D002728 ORTHO05D002874 4.0e-16 88.2 78 56.4
Nn8g38588 Nelumbo nucifera HOM05D002728 ORTHO05D002874 6.8e-16 87.4 83 53.0
COL.COLO4_37720 Corchorus olitorius HOM05D002728 ORTHO05D002874 1.5e-15 86.3 88 51.1
Dinv41242 Davidia involucrata HOM05D002728 ORTHO05D002874 1.5e-15 86.3 81 50.6
AL3G12370 Arabidopsis lyrata HOM05D002728 ORTHO05D002874 2.0e-15 85.9 91 51.6
AT3G02920 Arabidopsis thaliana HOM05D002728 ORTHO05D002874 2.6e-15 85.5 81 54.3
CSS0050130 Camellia sinensis var. sinensis HOM05D002728 ORTHO05D002874 2.6e-15 85.5 80 50.0
AUR62021305 Chenopodium quinoa HOM05D002728 ORTHO05D002874 2.6e-15 85.5 79 51.9
Sed0008387 Sechium edule HOM05D002728 ORTHO05D002874 4.4e-15 84.7 80 51.2
CAN.G674.8 Capsicum annuum HOM05D002728 ORTHO05D002874 1.3e-14 83.2 81 53.1
Thhalv10021296m.g Eutrema salsugineum HOM05D002728 ORTHO05D002874 2.2e-14 82.4 81 51.9
Aa31LG5G13420 Aethionema arabicum HOM05D002728 ORTHO05D002874 2.9e-14 82.0 81 51.9
ClCG06G013390 Citrullus lanatus HOM05D002728 ORTHO05D002874 2.9e-14 82.0 81 53.1
Potri.018G091700 Populus trichocarpa HOM05D002728 ORTHO05D002874 3.7e-14 81.6 78 56.4
MELO3C017458.2 Cucumis melo HOM05D002728 ORTHO05D002874 4.9e-14 81.3 81 49.4
Gohir.D05G005100 Gossypium hirsutum HOM05D002728 ORTHO05D002874 4.9e-14 81.3 97 47.4
Gorai.009G005000 Gossypium raimondii HOM05D002728 ORTHO05D002874 4.9e-14 81.3 97 47.4
BcaB04g21396 Brassica carinata HOM05D002728 ORTHO05D002874 6.4e-14 80.9 81 53.1
Sabra18G0078800 Salix brachista HOM05D002728 ORTHO05D002874 8.3e-14 80.5 78 55.1
Cfa013500 Carpinus fangiana HOM05D002728 ORTHO05D002874 1.4e-13 79.7 79 53.2
Haze_22088 Corylus avellana HOM05D002728 ORTHO05D002874 1.4e-13 79.7 79 54.4
Nitab4.5_0005257g0030 Nicotiana tabacum HOM05D002728 ORTHO05D002874 1.4e-13 79.7 81 49.4
Nitab4.5_0002165g0040 Nicotiana tabacum HOM05D002728 ORTHO05D002874 2.4e-13 79.0 81 49.4
Prupe.1G461400 Prunus persica HOM05D002728 ORTHO05D002874 2.4e-13 79.0 84 46.4
Cc06_g06720 Coffea canephora HOM05D002728 ORTHO05D002874 4.1e-13 78.2 81 45.7
CsaV3_1G031640 Cucumis sativus L. HOM05D002728 ORTHO05D002874 4.1e-13 78.2 81 48.1
Solyc10g081830.3 Solanum lycopersicum HOM05D002728 ORTHO05D002874 4.1e-13 78.2 81 49.4
Sopen10g032350 Solanum pennellii HOM05D002728 ORTHO05D002874 4.1e-13 78.2 80 50.0
MSTRG.19298 Avicennia marina HOM05D002728 ORTHO05D002874 7.0e-13 77.4 81 45.7
Cc02_g31460 Coffea canephora HOM05D002728 ORTHO05D002874 7.0e-13 77.4 81 45.7
arahy.Tifrunner.gnm1.ann1.59XDTJ Arachis hypogaea HOM05D002728 ORTHO05D002874 9.2e-13 77.0 75 50.7
Dinv09620 Davidia involucrata HOM05D002728 ORTHO05D002874 9.2e-13 77.0 97 43.3
Gohir.A05G065400 Gossypium hirsutum HOM05D002728 ORTHO05D002874 9.2e-13 77.0 80 43.8
QL02p097865 Quercus lobata HOM05D002728 ORTHO05D002874 9.2e-13 77.0 81 53.1
Ah.14g083770 Amaranthus hybridus HOM05D002728 ORTHO05D002874 1.2e-12 76.6 82 46.3
Psat5g275120 Pisum sativum HOM05D002728 ORTHO05D002874 1.6e-12 76.3 78 50.0
PGSC0003DMG400028143 Solanum tuberosum HOM05D002728 ORTHO05D002874 1.6e-12 76.3 81 48.1
Oeu009852.1 Olea europaea HOM05D002728 ORTHO05D002874 2.0e-12 75.9 76 47.4
EL10Ac8g18289 Beta vulgaris HOM05D002728 ORTHO05D002874 2.7e-12 75.5 79 46.8
Hund26344 Selenicereus undatus HOM05D002728 ORTHO05D002874 2.7e-12 75.5 79 49.4
Peaxi162Scf00083g01924 Petunia axillaris HOM05D002728 ORTHO05D002874 3.5e-12 75.1 81 46.9
Sc08g0005300 Simmondsia chinensis HOM05D002728 ORTHO05D002874 3.5e-12 75.1 78 51.3
MD15G1109200 Malus domestica HOM05D002728 ORTHO05D002874 4.6e-12 74.7 84 44.0
arahy.Tifrunner.gnm1.ann1.7IT8A8 Arachis hypogaea HOM05D002728 ORTHO05D002874 6.0e-12 74.3 75 49.3
Cc11_g04580 Coffea canephora HOM05D002728 ORTHO05D002874 6.0e-12 74.3 80 46.2
Oeu028651.1 Olea europaea HOM05D002728 ORTHO05D002874 6.0e-12 74.3 81 44.4
PGR044G1401 Punica granatum HOM05D002728 ORTHO05D002874 6.0e-12 74.3 81 50.6
Ca_21231_v3 Cicer arietinum L. HOM05D002728 ORTHO05D002874 7.8e-12 73.9 81 49.4
DCAR_020125 Daucus carota HOM05D002728 ORTHO05D010830 7.8e-12 73.9 81 44.4
FAN20G1722 Fragaria x ananassa HOM05D002728 ORTHO05D002874 7.8e-12 73.9 81 44.4
MD08G1131600 Malus domestica HOM05D002728 ORTHO05D002874 7.8e-12 73.9 84 44.0
FAN27G3346 Fragaria x ananassa HOM05D002728 ORTHO05D002874 1.0e-11 73.6 81 43.2
Ciclev10009206m.g Citrus clementina HOM05D002728 ORTHO05D002874 1.3e-11 73.2 79 51.9
Gohir.D05G068000 Gossypium hirsutum HOM05D002728 ORTHO05D002874 1.3e-11 73.2 82 42.7
FvH4_2g36940 Fragaria vesca HOM05D002728 ORTHO05D002874 1.7e-11 72.8 81 43.2
FAN15G0233 Fragaria x ananassa HOM05D002728 ORTHO05D002874 1.7e-11 72.8 81 43.2
HanXRQChr12g0365421 Helianthus annuus HOM05D002728 ORTHO05D002874 1.7e-11 72.8 111 36.9
CARHR076950 Cardamine hirsuta HOM05D002728 ORTHO05D002874 2.3e-11 72.4 82 47.6
Gohir.A05G004300 Gossypium hirsutum HOM05D002728 ORTHO05D002874 2.3e-11 72.4 95 45.3
Hma1.2p1_1025F.1_g249360 Hydrangea macrophylla HOM05D002728 ORTHO05D002874 3.0e-11 72.0 77 48.1
Actinidia14753 Actinidia chinensis HOM05D002728 ORTHO05D002874 3.9e-11 71.6 82 43.9
Migut.J00687 Erythranthe guttata HOM05D002728 ORTHO05D002874 3.9e-11 71.6 81 40.7
Lsat_1_v5_gn_8_67780 Lactuca sativa HOM05D002728 ORTHO05D002874 3.9e-11 71.6 83 45.8
Gorai.009G068800 Gossypium raimondii HOM05D002728 ORTHO05D002874 5.0e-11 71.2 82 42.7
TWI32G1170 Tripterygium wilfordii HOM05D002728 ORTHO05D002874 5.0e-11 71.2 80 45.0
Eucgr.C02332 Eucalyptus grandis HOM05D002728 ORTHO05D002874 6.6e-11 70.9 78 47.4
Psat0s312g0040 Pisum sativum HOM05D002728 ORTHO05D002874 6.6e-11 70.9 75 45.3
CSS0047734 Camellia sinensis var. sinensis HOM05D002728 ORTHO05D002874 8.6e-11 70.5 82 45.1
Duzib168G0477 Durio zibethinus HOM05D002728 ORTHO05D002874 8.6e-11 70.5 82 39.0
Medtr4g127950 Medicago truncatula HOM05D002728 ORTHO05D002874 1.5e-10 69.7 80 48.8
Cc06_g13200 Coffea canephora HOM05D002728 ORTHO05D002874 1.9e-10 69.3 78 41.0
Sabra06G0213400 Salix brachista HOM05D002728 ORTHO05D002874 1.9e-10 69.3 78 41.0
Peaxi162Scf00231g00728 Petunia axillaris HOM05D002728 ORTHO05D002874 2.5e-10 68.9 81 50.6
QL12p024865 Quercus lobata HOM05D002728 ORTHO05D002874 2.5e-10 68.9 84 42.9
Rhsim03G0264700 Rhododendron simsii HOM05D002728 ORTHO05D002874 2.5e-10 68.9 93 38.7
ECA236G0567 Erigeron canadensis HOM05D002728 ORTHO05D002874 3.3e-10 68.6 81 43.2
Lj4g0022723 Lotus japonicus HOM05D002728 ORTHO05D002874 3.3e-10 68.6 78 47.4
SGA_v2.0_scaffold13G06659 Striga asiatica HOM05D002728 ORTHO05D002874 3.3e-10 68.6 82 39.0
TPR.G5425 Trifolium pratense HOM05D002728 ORTHO05D002874 4.3e-10 68.2 81 46.9
Potri.006G275700 Populus trichocarpa HOM05D002728 ORTHO05D002874 5.6e-10 67.8 78 41.0
vmacro06011 Vaccinium macrocarpon HOM05D002728 ORTHO05D002874 5.6e-10 67.8 88 43.2
RcHm_v2.0_Chr6g0304821 Rosa chinensis HOM05D002728 ORTHO05D002874 7.3e-10 67.4 82 41.5
PSO170G5347 Papaver somniferum HOM05D002728 ORTHO05D002874 9.5e-10 67.0 78 43.6
Lalb_Chr07g0180521 Lupinus albus HOM05D002728 ORTHO05D002874 1.2e-09 66.6 79 49.4
MBI14_g17381_MAGBIO Magnolia biondii HOM05D002728 ORTHO05D002874 2.1e-09 65.9 84 44.0
vmacro14225 Vaccinium macrocarpon HOM05D002728 ORTHO05D002874 2.1e-09 65.9 84 42.9
Atru.chr7.2627 Acer truncatum HOM05D002728 ORTHO05D002874 2.8e-09 65.5 81 37.0
Gohir.D07G213300 Gossypium hirsutum HOM05D002728 ORTHO05D002874 2.8e-09 65.5 86 45.3
Gohir.A13G178000 Gossypium hirsutum HOM05D002728 ORTHO05D002874 3.6e-09 65.1 84 39.3
PSO063G0489 Papaver somniferum HOM05D002728 ORTHO05D002874 4.7e-09 64.7 78 42.3
Prupe.1G085000 Prunus persica HOM05D002728 ORTHO05D002874 4.7e-09 64.7 78 43.6
Gohir.D13G186100 Gossypium hirsutum HOM05D002728 ORTHO05D002874 6.2e-09 64.3 84 38.1
Gorai.013G212100 Gossypium raimondii HOM05D002728 ORTHO05D002874 6.2e-09 64.3 84 38.1
Actinidia18150 Actinidia chinensis HOM05D002728 ORTHO05D002874 8.0e-09 63.9 83 42.2
COL.COLO4_19047 Corchorus olitorius HOM05D002728 ORTHO05D002874 8.0e-09 63.9 82 39.0
Rhsim07G0137300 Rhododendron simsii HOM05D002728 ORTHO05D002874 8.0e-09 63.9 94 37.2
Hund03280 Selenicereus undatus HOM05D002728 ORTHO05D002874 2.3e-08 62.4 84 40.5
Phvul.003G145200 Phaseolus vulgaris HOM05D002728 ORTHO05D002874 3.1e-08 62.0 79 41.8
Ciclev10009139m.g Citrus clementina HOM05D002728 ORTHO05D002874 4.0e-08 61.6 82 39.0
Solyc07g018300.3 Solanum lycopersicum HOM05D002728 ORTHO05D002874 6.8e-08 60.8 81 42.0
PGSC0003DMG403013782 Solanum tuberosum HOM05D002728 ORTHO05D002874 6.8e-08 60.8 81 42.0
Haze_21713 Corylus avellana HOM05D002728 ORTHO05D002874 1.2e-07 60.1 67 44.8
CANSAT11G2497 Cannabis sativa HOM05D002728 ORTHO05D002874 2.0e-07 59.3 81 37.0
Sc06g0001190 Simmondsia chinensis HOM05D002728 ORTHO05D002874 2.0e-07 59.3 80 38.8
MD13G1252800 Malus domestica HOM05D002728 ORTHO05D002874 2.6e-07 58.9 83 41.0
SalBow6G5526 Salvia bowleyana HOM05D002728 ORTHO05D002874 2.6e-07 58.9 79 40.5
Nitab4.5_0004944g0050 Nicotiana tabacum HOM05D002728 ORTHO05D002874 3.4e-07 58.5 81 40.7
EL10Ac2g03729 Beta vulgaris HOM05D002728 ORTHO05D002874 4.4e-07 58.2 83 37.3
Gohir.A07G207100 Gossypium hirsutum HOM05D002728 ORTHO05D002874 4.4e-07 58.2 78 42.3
Sopen07g007450 Solanum pennellii HOM05D002728 ORTHO05D002874 4.4e-07 58.2 81 40.7
MSTRG.6224 Avicennia marina HOM05D002728 ORTHO05D002874 5.8e-07 57.8 78 38.5
CAN.G308.33 Capsicum annuum HOM05D002728 ORTHO05D002874 7.5e-07 57.4 83 41.0
Aqoxy7G03019 Aquilegia oxysepala HOM05D002728 ORTHO05D002874 9.8e-07 57.0 104 38.5
Nitab4.5_0006838g0010 Nicotiana tabacum HOM05D002728 ORTHO05D002874 9.8e-07 57.0 81 40.7
THA.LOC104803594 Tarenaya hassleriana HOM05D002728 ORTHO05D002874 9.8e-07 57.0 82 34.1
Potri.006G167600 Populus trichocarpa HOM05D002728 ORTHO05D002874 1.3e-06 56.6 78 39.7
VMungo1215G1050 Vigna mungo HOM05D002728 ORTHO05D002874 1.3e-06 56.6 79 36.7
HPP92_022513 Vanilla planifolia HOM05D002728 ORTHO05D002874 1.7e-06 56.2 84 41.7
AUR62009043 Chenopodium quinoa HOM05D002728 ORTHO05D002874 2.2e-06 55.8 84 38.1
AUR62020619 Chenopodium quinoa HOM05D002728 ORTHO05D002874 2.2e-06 55.8 84 36.9
AUR62038763 Chenopodium quinoa HOM05D002728 ORTHO05D002874 2.2e-06 55.8 84 38.1
Migut.J01489 Erythranthe guttata HOM05D002728 ORTHO05D002874 2.2e-06 55.8 78 38.5
RcHm_v2.0_Chr4g0402271 Rosa chinensis HOM05D002728 ORTHO05D002874 3.7e-06 55.1 78 39.7
MBI16_g31783_MAGBIO Magnolia biondii HOM05D002728 ORTHO05D002874 6.4e-06 54.3 81 43.2
Oeu017717.1 Olea europaea HOM05D002728 ORTHO05D002874 6.4e-06 54.3 78 37.2


User provided reference genes

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