Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc228.14 Carica papaya HOM05D003688 ORTHO05D004338 0.0e+00 1661.4 846 100.0
Cfa017377 Carpinus fangiana HOM05D003688 ORTHO05D004338 3.7e-269 931.8 833 59.5
Haze_20793 Corylus avellana HOM05D003688 ORTHO05D004338 8.4e-269 930.6 842 58.8
Potri.006G085700 Populus trichocarpa HOM05D003688 ORTHO05D004338 2.4e-260 902.5 836 58.5
Manes.09G091838 Manihot esculenta HOM05D003688 ORTHO05D004338 5.4e-260 901.4 825 58.2
Actinidia11259 Actinidia chinensis HOM05D003688 ORTHO05D004338 2.1e-259 899.4 829 59.6
Thecc.05G039500 Theobroma cacao HOM05D003688 ORTHO05D004338 7.3e-257 891.0 841 58.9
QL07p048346 Quercus lobata HOM05D003688 ORTHO05D004338 9.6e-257 890.6 835 56.9
Sabra06G0065100 Salix brachista HOM05D003688 ORTHO05D004338 3.6e-256 888.6 837 58.3
CSS0020509 Camellia sinensis var. sinensis HOM05D003688 ORTHO05D004338 1.8e-255 886.3 827 60.1
CANSAT35G0056 Cannabis sativa HOM05D003688 ORTHO05D004338 1.8e-255 886.3 831 57.4
Gohir.D09G151400 Gossypium hirsutum HOM05D003688 ORTHO05D004338 1.1e-252 877.1 839 57.8
Lalb_Chr01g0022521 Lupinus albus HOM05D003688 ORTHO05D004338 2.7e-251 872.5 821 57.6
CiPaw.10G145700 Carya illinoinensis HOM05D003688 ORTHO05D004338 4.6e-251 871.7 838 57.2
Gohir.A09G155900 Gossypium hirsutum HOM05D003688 ORTHO05D004338 2.5e-249 865.9 839 57.4
Dinv35601 Davidia involucrata HOM05D003688 ORTHO05D004338 4.3e-249 865.1 844 58.1
arahy.Tifrunner.gnm1.ann1.VY3GX3 Arachis hypogaea HOM05D003688 ORTHO05D004338 5.6e-249 864.8 829 57.5
arahy.Tifrunner.gnm1.ann1.N5BDHI Arachis hypogaea HOM05D003688 ORTHO05D004338 7.3e-249 864.4 829 57.5
TWI74G1144 Tripterygium wilfordii HOM05D003688 ORTHO05D004338 1.6e-248 863.2 833 57.7
Duzib106G0690 Durio zibethinus HOM05D003688 ORTHO05D004338 3.6e-248 862.1 840 57.4
Prupe.6G255500 Prunus persica HOM05D003688 ORTHO05D004338 6.2e-248 861.3 834 57.2
Glyma.07G132300 Glycine max HOM05D003688 ORTHO05D004338 1.8e-247 859.8 840 56.0
TWI77G0691 Tripterygium wilfordii HOM05D003688 ORTHO05D004338 2.0e-246 856.3 833 56.9
vmacro20159 Vaccinium macrocarpon HOM05D003688 ORTHO05D004338 2.6e-246 855.9 838 57.9
MD12G1142100 Malus domestica HOM05D003688 ORTHO05D004338 7.6e-246 854.4 837 56.9
Lalb_Chr03g0042261 Lupinus albus HOM05D003688 ORTHO05D004338 2.2e-245 852.8 826 56.7
Gorai.006G172700 Gossypium raimondii HOM05D003688 ORTHO05D004338 4.2e-244 848.6 839 56.4
Glyma.18G181200 Glycine max HOM05D003688 ORTHO05D004338 2.1e-243 846.3 838 55.5
Hma1.2p1_1899F.1_g306950 Hydrangea macrophylla HOM05D003688 ORTHO05D004338 3.5e-243 845.5 845 56.6
Rhsim05G0193000 Rhododendron simsii HOM05D003688 ORTHO05D004338 4.6e-243 845.1 827 57.2
TAR369G0630 Trochodendron aralioides HOM05D003688 ORTHO05D004338 1.0e-242 844.0 864 54.9
TAR623G0018 Trochodendron aralioides HOM05D003688 ORTHO05D004338 1.6e-240 836.6 847 57.0
Duzib128G0151 Durio zibethinus HOM05D003688 ORTHO05D004338 1.8e-239 833.2 851 56.3
Phvul.008G106950 Phaseolus vulgaris HOM05D003688 ORTHO05D004338 1.0e-237 827.4 847 54.3
PGR004G0645 Punica granatum HOM05D003688 ORTHO05D004338 7.1e-236 821.2 847 55.0
GSVIVG01034169001 Vitis vinifera HOM05D003688 ORTHO05D004338 9.3e-236 820.8 830 56.7
Ca_07551_v3 Cicer arietinum L. HOM05D003688 ORTHO05D004338 1.2e-235 820.5 831 54.6
Lj3C967G6 Lonicera japonica HOM05D003688 ORTHO05D004338 2.7e-235 819.3 825 57.0
Medtr7g061540 Medicago truncatula HOM05D003688 ORTHO05D004338 2.7e-235 819.3 835 54.7
Lj1g0008992 Lotus japonicus HOM05D003688 ORTHO05D004338 3.5e-235 818.9 830 55.5
MELO3C009256.2 Cucumis melo HOM05D003688 ORTHO05D004338 1.5e-233 813.5 822 54.4
ClCG10G021160 Citrullus lanatus HOM05D003688 ORTHO05D004338 1.3e-232 810.4 823 54.9
FAN09G1807 Fragaria x ananassa HOM05D003688 ORTHO05D004338 3.1e-231 805.8 871 54.0
FAN02G2694 Fragaria x ananassa HOM05D003688 ORTHO05D004338 6.9e-231 804.7 871 53.8
FAN14G0142 Fragaria x ananassa HOM05D003688 ORTHO05D004338 1.2e-230 803.9 872 54.2
FvH4_6g13660 Fragaria vesca HOM05D003688 ORTHO05D004338 1.0e-229 800.8 872 54.0
RcHm_v2.0_Chr3g0466531 Rosa chinensis HOM05D003688 ORTHO05D004338 5.0e-229 798.5 872 53.4
Cc06_g02620 Coffea canephora HOM05D003688 ORTHO05D004338 6.5e-229 798.1 825 54.1
MD04G1129300 Malus domestica HOM05D003688 ORTHO05D004338 5.5e-228 795.0 765 56.6
TPR.G23256 Trifolium pratense HOM05D003688 ORTHO05D004338 5.5e-228 795.0 831 53.7
Gorai.001G249500 Gossypium raimondii HOM05D003688 ORTHO05D004338 1.2e-227 793.9 842 54.0
Gohir.D13G098600 Gossypium hirsutum HOM05D003688 ORTHO05D004338 4.6e-227 792.0 842 53.8
Psat3g140000 Pisum sativum HOM05D003688 ORTHO05D004338 4.6e-227 792.0 832 53.7
DCAR_009228 Daucus carota HOM05D003688 ORTHO05D004338 1.9e-225 786.6 830 54.0
Peaxi162Scf00094g01313 Petunia axillaris HOM05D003688 ORTHO05D004338 1.3e-224 783.9 826 54.8
Gohir.A13G093100 Gossypium hirsutum HOM05D003688 ORTHO05D004338 4.8e-224 781.9 845 53.5
CsaV3_3G034880 Cucumis sativus L. HOM05D003688 ORTHO05D004338 6.3e-224 781.6 824 53.0
SalBow4G0433 Salvia bowleyana HOM05D003688 ORTHO05D004338 1.1e-223 780.8 826 52.9
Sed0022373 Sechium edule HOM05D003688 ORTHO05D004338 3.1e-223 779.2 830 52.3
MSTRG.10258 Avicennia marina HOM05D003688 ORTHO05D004338 6.9e-223 778.1 834 54.3
Sc20g0004890 Simmondsia chinensis HOM05D003688 ORTHO05D004338 6.5e-221 771.5 839 51.3
Nn2g11106 Nelumbo nucifera HOM05D003688 ORTHO05D004338 1.4e-220 770.4 841 52.0
EL10Ac9g22598 Beta vulgaris HOM05D003688 ORTHO05D004338 4.6e-219 765.4 830 52.3
Ciclev10013610m.g Citrus clementina HOM05D003688 ORTHO05D004338 7.9e-219 764.6 836 53.0
Lsat_1_v5_gn_8_81981 Lactuca sativa HOM05D003688 ORTHO05D004338 1.0e-218 764.2 846 53.8
Sopen09g005560 Solanum pennellii HOM05D003688 ORTHO05D004338 2.0e-217 760.0 823 53.1
THA.LOC104816269 Tarenaya hassleriana HOM05D003688 ORTHO05D004338 2.5e-217 759.6 834 53.0
Solyc09g010830.4 Solanum lycopersicum HOM05D003688 ORTHO05D004338 7.4e-217 758.1 823 53.5
Solyc10g084760.3 Solanum lycopersicum HOM05D003688 ORTHO05D004338 8.2e-216 754.6 830 52.5
AUR62029194 Chenopodium quinoa HOM05D003688 ORTHO05D004338 3.1e-215 752.7 840 51.5
Nitab4.5_0006677g0040 Nicotiana tabacum HOM05D003688 ORTHO05D004338 3.1e-215 752.7 825 52.4
Gohir.D01G211800 Gossypium hirsutum HOM05D003688 ORTHO05D004338 9.1e-215 751.1 852 52.6
Nitab4.5_0003845g0030 Nicotiana tabacum HOM05D003688 ORTHO05D004338 1.5e-214 750.4 837 52.1
Eucgr.A01266 Eucalyptus grandis HOM05D003688 ORTHO05D004338 4.5e-214 748.8 826 50.7
Gohir.A01G222300 Gossypium hirsutum HOM05D003688 ORTHO05D004338 1.3e-213 747.3 842 53.2
Gorai.002G257600 Gossypium raimondii HOM05D003688 ORTHO05D004338 2.2e-213 746.5 849 52.7
Nitab4.5_0000202g0100 Nicotiana tabacum HOM05D003688 ORTHO05D004338 2.2e-213 746.5 826 53.0
Oeu036138.2 Olea europaea HOM05D003688 ORTHO05D004338 1.1e-212 744.2 847 50.5
Nitab4.5_0000216g0310 Nicotiana tabacum HOM05D003688 ORTHO05D004338 1.4e-212 743.8 826 52.7
CAN.G324.6 Capsicum annuum HOM05D003688 ORTHO05D004338 2.5e-212 743.0 832 53.1
HanXRQChr04g0125101 Helianthus annuus HOM05D003688 ORTHO05D004338 4.2e-212 742.3 835 52.5
Sed0016820 Sechium edule HOM05D003688 ORTHO05D004338 9.4e-212 741.1 823 51.8
Thhalv10012411m.g Eutrema salsugineum HOM05D003688 ORTHO05D004338 1.6e-211 740.3 835 52.1
SGA_v2.0_scaffold35G14236 Striga asiatica HOM05D003688 ORTHO05D004338 1.5e-209 733.8 844 50.0
Migut.L01946 Erythranthe guttata HOM05D003688 ORTHO05D004338 3.3e-209 732.6 835 50.1
Sopen10g034210 Solanum pennellii HOM05D003688 ORTHO05D004338 3.3e-209 732.6 830 51.7
AUR62014948 Chenopodium quinoa HOM05D003688 ORTHO05D004338 4.4e-209 732.3 874 49.5
Sp6g40140 Schrenkiella parvula HOM05D003688 ORTHO05D004338 2.0e-206 723.4 847 51.5
BolC2t06043H Brassica oleracea HOM05D003688 ORTHO05D004338 3.5e-206 722.6 864 49.9
Carub.0006s0114 Capsella rubella HOM05D003688 ORTHO05D004338 1.3e-205 720.7 837 51.0
FAN05G2232 Fragaria x ananassa HOM05D003688 ORTHO05D004338 1.7e-205 720.3 771 54.0
A10p33320 Brassica napus HOM05D003688 ORTHO05D004338 2.9e-205 719.5 850 50.9
C02p00430 Brassica napus HOM05D003688 ORTHO05D004338 2.9e-205 719.5 864 49.8
Peaxi162Scf00165g01216 Petunia axillaris HOM05D003688 ORTHO05D004338 1.1e-204 717.6 844 50.6
BcaNung02121 Brassica carinata HOM05D003688 ORTHO05D004338 3.2e-204 716.1 848 50.2
C09p74230 Brassica napus HOM05D003688 ORTHO05D004338 3.2e-204 716.1 848 50.2
Aa31LG1G22450 Aethionema arabicum HOM05D003688 ORTHO05D004338 4.2e-204 715.7 820 51.0
BraA02t04715Z Brassica rapa HOM05D003688 ORTHO05D004338 1.2e-203 714.1 864 49.8
BolC3t12653H Brassica oleracea HOM05D003688 ORTHO05D004338 1.6e-203 713.8 821 50.9
BraA10t45363Z Brassica rapa HOM05D003688 ORTHO05D004338 1.6e-203 713.8 850 50.7
SGA_v2.0_scaffold94G28599 Striga asiatica HOM05D003688 ORTHO05D004338 3.6e-203 712.6 844 49.2
A03p00630 Brassica napus HOM05D003688 ORTHO05D004338 6.1e-203 711.8 836 50.2
BraA03t09453Z Brassica rapa HOM05D003688 ORTHO05D004338 6.1e-203 711.8 836 50.2
ECA236G0128 Erigeron canadensis HOM05D003688 ORTHO05D004338 1.0e-202 711.1 834 51.6
BcaB01g06158 Brassica carinata HOM05D003688 ORTHO05D004338 1.4e-202 710.7 821 50.7
C03p00900 Brassica napus HOM05D003688 ORTHO05D004338 1.8e-202 710.3 821 50.7
HanXRQChr06g0177081 Helianthus annuus HOM05D003688 ORTHO05D004338 4.0e-202 709.1 824 50.7
Aqoxy2G02133 Aquilegia oxysepala HOM05D003688 ORTHO05D004338 3.7e-200 702.6 836 48.6
AL6G11560 Arabidopsis lyrata HOM05D003688 ORTHO05D004338 3.7e-200 702.6 835 50.3
BcaC06g31982 Brassica carinata HOM05D003688 ORTHO05D004338 1.4e-199 700.7 848 50.1
AT5G02310 Arabidopsis thaliana HOM05D003688 ORTHO05D004338 4.5e-198 695.7 838 50.1
CARHR211070 Cardamine hirsuta HOM05D003688 ORTHO05D004338 4.7e-195 685.6 850 49.1
MBI14_g36919_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 5.2e-194 682.2 865 47.3
PSO151G0112 Papaver somniferum HOM05D003688 ORTHO05D004338 4.0e-186 656.0 855 47.1
AUR62029189 Chenopodium quinoa HOM05D003688 ORTHO05D004338 2.8e-184 649.8 834 47.1
HanXRQChr06g0179281 Helianthus annuus HOM05D003688 ORTHO05D004338 1.1e-183 647.9 829 48.4
PSO339G2612 Papaver somniferum HOM05D003688 ORTHO05D004338 5.0e-181 639.0 858 46.2
AUR62029193 Chenopodium quinoa HOM05D003688 ORTHO05D004338 1.2e-179 634.4 814 47.3
ATR0559G162 Amborella trichopoda HOM05D003688 ORTHO05D004338 4.7e-179 632.5 859 44.5
AUR62014950 Chenopodium quinoa HOM05D003688 ORTHO05D004338 1.1e-167 594.7 836 44.3
BcaC03g18436 Brassica carinata HOM05D003688 ORTHO05D004338 1.2e-166 591.3 810 45.8
Zm00001eb124390 Zea mays HOM05D003688 ORTHO05D004338 3.1e-162 576.6 850 43.1
HPP92_012595 Vanilla planifolia HOM05D003688 ORTHO05D004338 1.7e-157 560.8 857 42.5
SEGI_36024 Sequoiadendron giganteum HOM05D003688 ORTHO05D004338 1.3e-152 544.7 887 39.3
Atru.chr8.1978 Acer truncatum HOM05D003688 ORTHO05D004338 2.5e-148 530.4 416 67.1
BcaC03g18435 Brassica carinata HOM05D003688 ORTHO05D004338 4.7e-147 526.2 736 45.4
BcaNung06990 Brassica carinata HOM05D003688 ORTHO05D004338 6.9e-122 442.6 657 44.3
Pp3c10_20380 Physcomitrium patens HOM05D003688 ORTHO05D004338 2.6e-113 414.1 899 34.3
Pp3c3_37220 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.7e-112 411.4 896 33.7
SMO361G0552 Selaginella moellendorffii HOM05D003688 ORTHO05D004338 4.2e-111 406.8 884 34.8
SMO361G0120 Selaginella moellendorffii HOM05D003688 ORTHO05D004338 6.7e-109 399.4 882 34.7
Pp3c3_24510 Physcomitrium patens HOM05D003688 ORTHO05D004338 7.4e-108 396.0 906 32.9
Mapoly0123s0014 Marchantia polymorpha HOM05D003688 ORTHO05D004338 2.8e-107 394.0 946 33.4
CAN.G326.2 Capsicum annuum HOM05D003688 ORTHO05D004338 3.1e-106 390.6 354 59.3
MBI14_g20100_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 6.9e-98 362.8 394 53.6
Pp3c8_2930 Physcomitrium patens HOM05D003688 ORTHO05D004338 9.4e-95 352.4 896 31.0
Pp3c8_2940 Physcomitrium patens HOM05D003688 ORTHO05D004338 9.4e-95 352.4 896 31.0
CDE04G3033 Ceratophyllum demersum HOM05D003688 ORTHO05D004338 2.7e-94 350.9 837 34.2
CAN.G326.3 Capsicum annuum HOM05D003688 ORTHO05D004338 8.2e-83 312.8 414 46.6
Os01g0148050 Oryza sativa ssp. japonica HOM05D003688 ORTHO05D004338 1.2e-78 298.9 580 37.4
CBR_g34200 Chara braunii HOM05D003688 ORTHO05D004338 4.2e-71 273.9 841 28.5
unitig_0.g702 Utricularia gibba HOM05D003688 ORTHO05D004338 1.1e-63 249.2 520 37.1
SHI12676 Sapria himalayana HOM05D003688 ORTHO05D004338 1.4e-53 215.7 471 32.5
Atru.chr8.1977 Acer truncatum HOM05D003688 ORTHO05D004338 3.6e-46 191.0 166 60.2
Atru.chr8.1976 Acer truncatum HOM05D003688 ORTHO05D004338 8.7e-32 143.3 132 57.6
Lsat_1_v5_gn_4_33481 Lactuca sativa HOM05D003688 ORTHO05D004338 4.9e-27 127.5 146 50.0
PRCOL_00001936 Prasinoderma coloniale HOM05D003688 ORTHO05D004338 1.8e-16 92.4 196 33.2
MBI19_g16672_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 4.3e-15 87.8 122 43.4
AagrBONN_evm.TU.Sc2ySwM_344.5255 Anthoceros agrestis HOM05D003688 ORTHO05D004338 9.9e-12 76.6 642 22.7
MCO04G508 Micromonas commoda HOM05D003688 ORTHO05D004338 3.2e-10 71.6 710 22.4
Mapoly0028s0055 Marchantia polymorpha HOM05D003688 ORTHO05D004338 4.6e-09 67.8 67 44.8
Pp3c9_4700 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.0e-08 66.6 657 20.2
Pp3c2_29090 Physcomitrium patens HOM05D003688 ORTHO05D004338 5.1e-08 64.3 62 43.5
Pp3c7_22570 Physcomitrium patens HOM05D003688 ORTHO05D004338 6.7e-08 63.9 116 35.3
Pp3c15_3560 Physcomitrium patens HOM05D003688 ORTHO05D004338 8.7e-08 63.5 356 23.6


User provided reference genes

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