Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc211.9 Carica papaya HOM05D005691 ORTHO05D007096 2.9e-182 641.7 321 100.0
Manes.12G061100 Manihot esculenta HOM05D005691 ORTHO05D007096 4.0e-115 418.7 324 67.0
Thecc.01G191500 Theobroma cacao HOM05D005691 ORTHO05D007096 6.9e-115 417.9 322 66.8
Ciclev10014054m.g Citrus clementina HOM05D005691 ORTHO05D007096 3.4e-114 415.6 325 65.8
Potri.002G221300 Populus trichocarpa HOM05D005691 ORTHO05D007096 3.8e-113 412.1 324 66.0
FAN05G1189 Fragaria x ananassa HOM05D005691 ORTHO05D007096 1.9e-112 409.8 324 64.5
FvH4_6g40930 Fragaria vesca HOM05D005691 ORTHO05D007096 4.2e-112 408.7 324 64.5
FAN14G0170 Fragaria x ananassa HOM05D005691 ORTHO05D007096 4.2e-112 408.7 324 64.5
vmacro09398 Vaccinium macrocarpon HOM05D005691 ORTHO05D007096 6.7e-110 401.4 318 66.4
Haze_12684 Corylus avellana HOM05D005691 ORTHO05D007096 1.1e-109 400.6 326 62.9
Atru.chr6.3368 Acer truncatum HOM05D005691 ORTHO05D007096 1.5e-109 400.2 331 65.3
FAN02G1659 Fragaria x ananassa HOM05D005691 ORTHO05D007096 1.5e-109 400.2 324 63.0
MD17G1113600 Malus domestica HOM05D005691 ORTHO05D007096 1.5e-109 400.2 324 63.9
FAN09G3499 Fragaria x ananassa HOM05D005691 ORTHO05D007096 2.5e-109 399.4 324 63.0
GSVIVG01030051001 Vitis vinifera HOM05D005691 ORTHO05D007096 2.5e-109 399.4 325 63.7
Gohir.A07G191000 Gossypium hirsutum HOM05D005691 ORTHO05D007096 7.4e-109 397.9 323 63.8
RcHm_v2.0_Chr2g0156551 Rosa chinensis HOM05D005691 ORTHO05D007096 7.4e-109 397.9 324 61.7
Gorai.001G221100 Gossypium raimondii HOM05D005691 ORTHO05D007096 1.3e-108 397.1 323 63.8
Prupe.3G200800 Prunus persica HOM05D005691 ORTHO05D007096 2.2e-108 396.4 329 63.2
Gohir.D07G197400 Gossypium hirsutum HOM05D005691 ORTHO05D007096 8.2e-108 394.4 323 62.8
QL08p028494 Quercus lobata HOM05D005691 ORTHO05D007096 1.1e-107 394.0 325 62.5
COL.COLO4_09229 Corchorus olitorius HOM05D005691 ORTHO05D007096 6.9e-107 391.3 322 62.7
TWI18G1215 Tripterygium wilfordii HOM05D005691 ORTHO05D007096 1.5e-106 390.2 324 63.0
PSO675G5893 Papaver somniferum HOM05D005691 ORTHO05D007096 7.7e-106 387.9 318 63.5
Lj8A134T75 Lonicera japonica HOM05D005691 ORTHO05D007096 5.0e-105 385.2 319 64.6
Dinv07866 Davidia involucrata HOM05D005691 ORTHO05D007096 2.5e-104 382.9 325 61.8
Sabra02G0169100 Salix brachista HOM05D005691 ORTHO05D007096 1.6e-103 380.2 367 57.5
CSS0009966 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 3.6e-103 379.0 322 61.2
CSS0040753 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 3.6e-103 379.0 322 61.2
Actinidia21444 Actinidia chinensis HOM05D005691 ORTHO05D007096 1.4e-102 377.1 313 62.9
Oeu029977.1 Olea europaea HOM05D005691 ORTHO05D007096 1.8e-102 376.7 320 61.6
THA.LOC104815358 Tarenaya hassleriana HOM05D005691 ORTHO05D007096 1.8e-102 376.7 315 61.3
CiPaw.03G279200 Carya illinoinensis HOM05D005691 ORTHO05D007096 1.1e-101 374.0 326 59.8
Nitab4.5_0009877g0010 Nicotiana tabacum HOM05D005691 ORTHO05D007096 2.0e-101 373.2 326 61.0
AUR62017514 Chenopodium quinoa HOM05D005691 ORTHO05D007096 3.3e-101 372.5 318 60.4
Nitab4.5_0000441g0080 Nicotiana tabacum HOM05D005691 ORTHO05D007096 7.4e-101 371.3 326 61.0
Solyc07g047860.4 Solanum lycopersicum HOM05D005691 ORTHO05D007096 7.4e-101 371.3 327 59.6
Eucgr.A01048 Eucalyptus grandis HOM05D005691 ORTHO05D007096 9.7e-101 370.9 323 59.4
Nn1g07449 Nelumbo nucifera HOM05D005691 ORTHO05D007096 9.7e-101 370.9 311 62.7
PGR042G3586 Punica granatum HOM05D005691 ORTHO05D007096 9.7e-101 370.9 316 60.8
AUR62015058 Chenopodium quinoa HOM05D005691 ORTHO05D007096 1.3e-100 370.5 318 60.1
Sopen07g024300 Solanum pennellii HOM05D005691 ORTHO05D007096 2.2e-100 369.8 327 59.3
PGSC0003DMG400006150 Solanum tuberosum HOM05D005691 ORTHO05D007096 6.3e-100 368.2 329 59.6
CANSAT64G0049 Cannabis sativa HOM05D005691 ORTHO05D007096 5.3e-99 365.2 321 60.1
Thhalv10003521m.g Eutrema salsugineum HOM05D005691 ORTHO05D007096 5.3e-99 365.2 310 60.0
AT2G05120 Arabidopsis thaliana HOM05D005691 ORTHO05D007096 1.2e-98 364.0 323 60.1
Lalb_Chr10g0107611 Lupinus albus HOM05D005691 ORTHO05D007096 4.5e-98 362.1 326 59.5
LjContig00081g0016683 Lotus japonicus HOM05D005691 ORTHO05D007096 1.7e-97 360.1 326 57.4
arahy.Tifrunner.gnm1.ann1.5BD1HA Arachis hypogaea HOM05D005691 ORTHO05D007096 2.9e-97 359.4 326 58.3
AL3G42730 Arabidopsis lyrata HOM05D005691 ORTHO05D007096 3.8e-97 359.0 323 58.5
Hma1.2p1_0133F.1_g061380 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 3.8e-97 359.0 313 58.8
Peaxi162Scf00776g00233 Petunia axillaris HOM05D005691 ORTHO05D007096 3.8e-97 359.0 321 58.9
BraA03t13590Z Brassica rapa HOM05D005691 ORTHO05D007096 5.0e-97 358.6 321 57.9
EL10Ac9g22718 Beta vulgaris HOM05D005691 ORTHO05D007096 6.5e-97 358.2 318 57.5
A03p44570 Brassica napus HOM05D005691 ORTHO05D007096 6.5e-97 358.2 321 57.6
arahy.Tifrunner.gnm1.ann1.2CK2M8 Arachis hypogaea HOM05D005691 ORTHO05D007096 1.1e-96 357.5 326 58.3
Glyma.14G008200 Glycine max HOM05D005691 ORTHO05D007096 1.9e-96 356.7 326 57.4
Sp3g23610 Schrenkiella parvula HOM05D005691 ORTHO05D007096 1.9e-96 356.7 322 58.1
Phvul.008G284900 Phaseolus vulgaris HOM05D005691 ORTHO05D007096 2.5e-96 356.3 326 57.1
Cc00_g04460 Coffea canephora HOM05D005691 ORTHO05D007096 4.2e-96 355.5 324 58.0
TPR.G1235 Trifolium pratense HOM05D005691 ORTHO05D007096 4.2e-96 355.5 326 57.1
CAN.G854.9 Capsicum annuum HOM05D005691 ORTHO05D007096 7.2e-96 354.8 312 59.3
C03p55370 Brassica napus HOM05D005691 ORTHO05D007096 9.4e-96 354.4 321 57.0
CARHR103010 Cardamine hirsuta HOM05D005691 ORTHO05D007096 9.4e-96 354.4 310 59.0
Glyma.02G305200 Glycine max HOM05D005691 ORTHO05D007096 9.4e-96 354.4 323 56.7
Hund01594 Selenicereus undatus HOM05D005691 ORTHO05D007096 9.4e-96 354.4 317 59.6
BcaC01g03178 Brassica carinata HOM05D005691 ORTHO05D007096 1.2e-95 354.0 321 57.0
BolC3t17809H Brassica oleracea HOM05D005691 ORTHO05D007096 1.2e-95 354.0 321 57.0
MELO3C024202.2 Cucumis melo HOM05D005691 ORTHO05D007096 1.6e-95 353.6 323 57.9
Psat2g005000 Pisum sativum HOM05D005691 ORTHO05D007096 2.1e-95 353.2 326 56.7
BcaB08g34496 Brassica carinata HOM05D005691 ORTHO05D007096 3.6e-95 352.4 310 58.1
ClCG02G002780 Citrullus lanatus HOM05D005691 ORTHO05D007096 6.1e-95 351.7 325 57.8
Medtr5g097260 Medicago truncatula HOM05D005691 ORTHO05D007096 7.9e-95 351.3 326 56.4
Carub.0003s2665 Capsella rubella HOM05D005691 ORTHO05D007096 1.0e-94 350.9 322 57.1
DCAR_019708 Daucus carota HOM05D005691 ORTHO05D007096 1.8e-94 350.1 317 58.0
Ca_06452_v3 Cicer arietinum L. HOM05D005691 ORTHO05D007096 3.0e-94 349.4 326 55.8
MSTRG.6644 Avicennia marina HOM05D005691 ORTHO05D007096 5.1e-94 348.6 312 59.0
CsaV3_7G002600 Cucumis sativus L. HOM05D005691 ORTHO05D007096 5.1e-94 348.6 326 58.3
BcaB06g26838 Brassica carinata HOM05D005691 ORTHO05D007096 6.7e-94 348.2 323 56.7
Aqoxy4G02218 Aquilegia oxysepala HOM05D005691 ORTHO05D007096 7.4e-93 344.7 307 59.0
ECA240G2675 Erigeron canadensis HOM05D005691 ORTHO05D007096 7.4e-93 344.7 318 57.2
HanXRQChr03g0075241 Helianthus annuus HOM05D005691 ORTHO05D007096 9.7e-93 344.4 318 57.5
CDE04G1592 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 8.2e-92 341.3 315 54.9
VMungo0647G0393 Vigna mungo HOM05D005691 ORTHO05D007096 1.1e-91 340.9 326 56.1
Sed0003649 Sechium edule HOM05D005691 ORTHO05D007096 1.2e-90 337.4 326 57.4
Sc21g0000790 Simmondsia chinensis HOM05D005691 ORTHO05D007096 2.6e-90 336.3 318 57.2
MBI16_g26390_MAGBIO Magnolia biondii HOM05D005691 ORTHO05D007096 7.2e-88 328.2 313 55.3
SalBow7G1588 Salvia bowleyana HOM05D005691 ORTHO05D007096 8.0e-87 324.7 308 53.9
Migut.M00032 Erythranthe guttata HOM05D005691 ORTHO05D007096 3.9e-86 322.4 301 56.1
Rhsim04G0038700 Rhododendron simsii HOM05D005691 ORTHO05D007096 2.6e-85 319.7 456 43.2
SGA_v2.0_scaffold73G24511 Striga asiatica HOM05D005691 ORTHO05D007096 4.1e-83 312.4 307 52.4
HPP92_000881 Vanilla planifolia HOM05D005691 ORTHO05D007096 1.6e-82 310.5 321 55.8
ATR1149G135 Amborella trichopoda HOM05D005691 ORTHO05D007096 2.0e-82 310.1 299 53.5
SHI10144 Sapria himalayana HOM05D005691 ORTHO05D007096 2.7e-79 299.7 319 55.2
Lsat_1_v5_gn_9_104801 Lactuca sativa HOM05D005691 ORTHO05D007096 2.3e-78 296.6 313 51.8
Zm00001eb399630 Zea mays HOM05D005691 ORTHO05D007096 2.8e-76 289.7 300 54.0
Os03g0225500 Oryza sativa ssp. japonica HOM05D005691 ORTHO05D007096 5.9e-74 282.0 300 52.3
SEGI_38606 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 2.9e-73 279.6 303 48.5
SGA_v2.0_scaffold292G47412 Striga asiatica HOM05D005691 ORTHO05D007096 3.8e-73 279.3 306 48.4
SGA_v2.0_scaffold292G47401 Striga asiatica HOM05D005691 ORTHO05D007096 1.9e-72 276.9 305 50.2
BcaC06g35896 Brassica carinata HOM05D005691 ORTHO05D007096 8.8e-70 268.1 296 50.7
C07p09950 Brassica napus HOM05D005691 ORTHO05D007096 4.9e-60 235.7 295 46.4
BolC7t41441H Brassica oleracea HOM05D005691 ORTHO05D007096 1.2e-58 231.1 289 47.1
Hma1.2p1_1825F.1_g304370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 7.8e-58 228.4 205 57.1
Hma1.2p1_0133F.1_g061390 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 5.4e-51 205.7 170 58.2
TAR626G1898 Trochodendron aralioides HOM05D005691 ORTHO05D007096 2.0e-50 203.8 163 65.0
Mapoly0061s0124 Marchantia polymorpha HOM05D005691 ORTHO05D007096 8.6e-49 198.4 307 40.1
Pp3c21_14430 Physcomitrium patens HOM05D005691 ORTHO05D007096 8.6e-49 198.4 298 39.3
SMO351G0158 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 3.3e-48 196.4 303 39.9
unitig_746.g26642 Utricularia gibba HOM05D005691 ORTHO05D007096 8.9e-38 161.8 197 46.7
PGR042G0477 Punica granatum HOM05D005691 ORTHO05D007096 1.6e-34 151.0 127 62.2
Hma1.2p1_1825F.1_g304360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 4.7e-31 139.4 118 61.9
CBR_g39814 Chara braunii HOM05D005691 ORTHO05D007096 3.1e-30 136.7 256 35.9
AagrBONN_evm.TU.Sc2ySwM_362.2878 Anthoceros agrestis HOM05D005691 ORTHO05D007096 1.2e-29 134.8 214 39.7
SMO351G0109 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 7.6e-21 105.5 239 33.5
CSS0045948 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 1.9e-16 90.9 74 59.5
MCO12G144 Micromonas commoda HOM05D005691 ORTHO05D007096 3.6e-15 86.7 236 31.4


User provided reference genes

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