Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc195.20 Carica papaya HOM05D004616 ORTHO05D005860 5.5e-171 604.4 339 100.0
Cfa009990 Carpinus fangiana HOM05D004616 ORTHO05D005860 1.2e-93 347.4 295 68.8
Haze_23351 Corylus avellana HOM05D004616 ORTHO05D005860 6.0e-93 345.1 292 71.9
CiPaw.14G098200 Carya illinoinensis HOM05D004616 ORTHO05D005860 3.3e-91 339.3 296 67.9
Prupe.6G135500 Prunus persica HOM05D004616 ORTHO05D005860 4.5e-88 328.9 295 66.4
Ciclev10030048m.g Citrus clementina HOM05D004616 ORTHO05D005860 1.8e-84 317.0 296 66.9
Atru.chr3.3173 Acer truncatum HOM05D004616 ORTHO05D005860 8.7e-84 314.7 295 65.4
Thecc.09G279200 Theobroma cacao HOM05D004616 ORTHO05D005860 1.1e-83 314.3 295 64.1
MD11G1168400 Malus domestica HOM05D004616 ORTHO05D005860 5.6e-83 312.0 295 65.1
FvH4_3g25610 Fragaria vesca HOM05D004616 ORTHO05D005860 1.1e-81 307.8 295 61.7
FAN11G2307 Fragaria x ananassa HOM05D004616 ORTHO05D005860 1.1e-81 307.8 295 61.7
Manes.04G001500 Manihot esculenta HOM05D004616 ORTHO05D005860 1.2e-80 304.3 297 68.0
RcHm_v2.0_Chr5g0045751 Rosa chinensis HOM05D004616 ORTHO05D005860 1.2e-80 304.3 295 61.7
FAN21G3247 Fragaria x ananassa HOM05D004616 ORTHO05D005860 1.5e-80 303.9 295 61.7
FAN16G2710 Fragaria x ananassa HOM05D004616 ORTHO05D005860 2.0e-80 303.5 295 61.7
MD03G1149500 Malus domestica HOM05D004616 ORTHO05D005860 5.8e-80 302.0 296 65.2
FAN25G2905 Fragaria x ananassa HOM05D004616 ORTHO05D005860 1.3e-79 300.8 295 61.0
Duzib150G0968 Durio zibethinus HOM05D004616 ORTHO05D005860 4.9e-79 298.9 295 66.4
COL.COLO4_34009 Corchorus olitorius HOM05D004616 ORTHO05D005860 2.5e-78 296.6 295 64.4
Potri.004G196800 Populus trichocarpa HOM05D004616 ORTHO05D005860 7.1e-78 295.0 295 63.7
Potri.009G160100 Populus trichocarpa HOM05D004616 ORTHO05D005860 3.5e-77 292.7 295 62.4
Dinv22821 Davidia involucrata HOM05D004616 ORTHO05D005860 1.0e-76 291.2 297 63.0
Gohir.A09G096900 Gossypium hirsutum HOM05D004616 ORTHO05D005860 8.7e-76 288.1 295 62.7
Sabra04G0133400 Salix brachista HOM05D004616 ORTHO05D005860 1.5e-75 287.3 296 62.8
Gorai.006G113400 Gossypium raimondii HOM05D004616 ORTHO05D005860 2.1e-74 283.5 295 62.0
Gohir.D09G096700 Gossypium hirsutum HOM05D004616 ORTHO05D005860 8.2e-74 281.6 295 61.7
Sabra09G0125300 Salix brachista HOM05D004616 ORTHO05D005860 4.5e-72 275.8 295 59.7
GSVIVG01036084001 Vitis vinifera HOM05D004616 ORTHO05D005860 2.9e-71 273.1 295 59.3
CSS0008379 Camellia sinensis var. sinensis HOM05D004616 ORTHO05D005860 7.1e-70 268.5 295 58.0
QL01p011880 Quercus lobata HOM05D004616 ORTHO05D005860 7.1e-70 268.5 300 57.7
Duzib168G0483 Durio zibethinus HOM05D004616 ORTHO05D005860 9.3e-70 268.1 295 60.3
Actinidia07256 Actinidia chinensis HOM05D004616 ORTHO05D005860 2.3e-68 263.5 296 60.5
TAR633G1321 Trochodendron aralioides HOM05D004616 ORTHO05D005860 1.5e-67 260.8 297 58.9
TWI79G0721 Tripterygium wilfordii HOM05D004616 ORTHO05D005860 1.9e-67 260.4 300 61.0
CSS0010321 Camellia sinensis var. sinensis HOM05D004616 ORTHO05D005860 2.5e-67 260.0 295 60.3
Actinidia24228 Actinidia chinensis HOM05D004616 ORTHO05D005860 3.3e-67 259.6 297 57.9
CSS0027671 Camellia sinensis var. sinensis HOM05D004616 ORTHO05D005860 9.7e-67 258.1 286 61.2
Sc06g0008700 Simmondsia chinensis HOM05D004616 ORTHO05D005860 2.2e-66 256.9 295 59.0
Rhsim13G0113400 Rhododendron simsii HOM05D004616 ORTHO05D005860 3.7e-66 256.1 301 61.1
PGR102G3030 Punica granatum HOM05D004616 ORTHO05D005860 6.3e-66 255.4 296 54.7
TWI75G1519 Tripterygium wilfordii HOM05D004616 ORTHO05D005860 9.0e-65 251.5 297 60.9
vmacro03327 Vaccinium macrocarpon HOM05D004616 ORTHO05D005860 1.2e-64 251.1 292 59.2
CANSAT54G1125 Cannabis sativa HOM05D004616 ORTHO05D005860 3.4e-64 249.6 302 59.6
TAR623G1480 Trochodendron aralioides HOM05D004616 ORTHO05D005860 5.9e-64 248.8 296 59.1
Nn6g34808 Nelumbo nucifera HOM05D004616 ORTHO05D005860 1.4e-62 244.2 298 57.0
Eucgr.B03827 Eucalyptus grandis HOM05D004616 ORTHO05D005860 5.5e-62 242.3 296 53.7
Dinv08937 Davidia involucrata HOM05D004616 ORTHO05D005860 7.9e-61 238.4 297 60.3
Gohir.D07G114800 Gossypium hirsutum HOM05D004616 ORTHO05D005860 1.1e-59 234.6 273 58.6
CsaV3_1G015050 Cucumis sativus L. HOM05D004616 ORTHO05D005860 1.4e-57 227.6 300 55.3
Ca_01648_v3 Cicer arietinum L. HOM05D004616 ORTHO05D005860 1.8e-57 227.3 302 54.3
Sc12g0004630 Simmondsia chinensis HOM05D004616 ORTHO05D005860 5.3e-57 225.7 296 51.0
MELO3C004671.2 Cucumis melo HOM05D004616 ORTHO05D005860 2.0e-56 223.8 300 55.3
Hund18773 Selenicereus undatus HOM05D004616 ORTHO05D005860 2.6e-56 223.4 295 52.9
Lj3g0000295 Lotus japonicus HOM05D004616 ORTHO05D005860 4.5e-56 222.6 301 53.5
Sc12g0004600 Simmondsia chinensis HOM05D004616 ORTHO05D005860 5.9e-56 222.2 296 50.7
EL10Ac7g16331 Beta vulgaris HOM05D004616 ORTHO05D005860 2.5e-54 216.9 297 51.5
Cc01_g08850 Coffea canephora HOM05D004616 ORTHO05D005860 5.5e-54 215.7 307 48.9
Medtr2g086780 Medicago truncatula HOM05D004616 ORTHO05D005860 5.5e-54 215.7 305 55.4
Lalb_Chr01g0004921 Lupinus albus HOM05D004616 ORTHO05D005860 7.2e-54 215.3 299 54.8
Aqoxy2G01054 Aquilegia oxysepala HOM05D004616 ORTHO05D005860 9.4e-54 214.9 299 54.8
Nitab4.5_0000937g0090 Nicotiana tabacum HOM05D004616 ORTHO05D005860 1.2e-53 214.5 301 52.2
Manes.11G164000 Manihot esculenta HOM05D004616 ORTHO05D005860 2.3e-52 210.3 284 53.5
Nitab4.5_0005472g0060 Nicotiana tabacum HOM05D004616 ORTHO05D005860 2.3e-52 210.3 294 52.7
FAN25G2333 Fragaria x ananassa HOM05D004616 ORTHO05D005860 3.9e-52 209.5 257 52.5
arahy.Tifrunner.gnm1.ann1.38CPMH Arachis hypogaea HOM05D004616 ORTHO05D005860 1.1e-51 208.0 299 47.8
Nitab4.5_0008177g0040 Nicotiana tabacum HOM05D004616 ORTHO05D005860 1.5e-51 207.6 291 53.3
TPR.G4527 Trifolium pratense HOM05D004616 ORTHO05D005860 2.6e-51 206.8 261 53.3
arahy.Tifrunner.gnm1.ann1.TN2AAQ Arachis hypogaea HOM05D004616 ORTHO05D005860 4.4e-51 206.1 299 49.2
DCAR_012213 Daucus carota HOM05D004616 ORTHO05D005860 7.4e-51 205.3 300 49.7
Oeu031468.1 Olea europaea HOM05D004616 ORTHO05D005860 7.4e-51 205.3 306 50.0
Peaxi162Scf00224g00117 Petunia axillaris HOM05D004616 ORTHO05D005860 7.4e-51 205.3 301 50.8
Hund20933 Selenicereus undatus HOM05D004616 ORTHO05D005860 7.4e-51 205.3 295 51.2
PSO339G4556 Papaver somniferum HOM05D004616 ORTHO05D005860 9.7e-51 204.9 303 48.8
Lj2A968G32 Lonicera japonica HOM05D004616 ORTHO05D005860 3.7e-50 203.0 297 47.1
Psat5g257760 Pisum sativum HOM05D004616 ORTHO05D005860 3.7e-50 203.0 309 50.8
PSO801G0782 Papaver somniferum HOM05D004616 ORTHO05D005860 1.1e-49 201.4 303 49.5
Gorai.001G123000 Gossypium raimondii HOM05D004616 ORTHO05D005860 2.4e-49 200.3 170 67.6
Sed0016133 Sechium edule HOM05D004616 ORTHO05D005860 7.0e-49 198.7 254 53.9
CAN.G919.39 Capsicum annuum HOM05D004616 ORTHO05D005860 9.1e-49 198.4 302 50.3
CDE08G0566 Ceratophyllum demersum HOM05D004616 ORTHO05D005860 1.2e-48 198.0 298 48.7
THA.LOC104800519 Tarenaya hassleriana HOM05D004616 ORTHO05D005860 1.5e-48 197.6 299 49.8
Glyma.12G091600 Glycine max HOM05D004616 ORTHO05D005860 2.0e-48 197.2 308 49.0
Gohir.A07G111000 Gossypium hirsutum HOM05D004616 ORTHO05D005860 3.5e-48 196.4 170 67.6
Sopen06g030640 Solanum pennellii HOM05D004616 ORTHO05D005860 3.5e-48 196.4 302 49.7
THA.LOC104826435 Tarenaya hassleriana HOM05D004616 ORTHO05D005860 3.5e-48 196.4 311 49.8
ECA233G2149 Erigeron canadensis HOM05D004616 ORTHO05D005860 7.7e-48 195.3 124 77.4
MSTRG.18768 Avicennia marina HOM05D004616 ORTHO05D005860 1.3e-47 194.5 308 49.0
Phvul.011G096000 Phaseolus vulgaris HOM05D004616 ORTHO05D005860 1.3e-47 194.5 306 49.0
VMungo1127G2084 Vigna mungo HOM05D004616 ORTHO05D005860 1.7e-47 194.1 303 47.2
Solyc06g074220.3 Solanum lycopersicum HOM05D004616 ORTHO05D005860 5.0e-47 192.6 302 49.7
Solyc11g068660.2 Solanum lycopersicum HOM05D004616 ORTHO05D005860 5.5e-46 189.1 301 50.2
Glyma.11G181500 Glycine max HOM05D004616 ORTHO05D005860 9.4e-46 188.3 301 48.5
PGSC0003DMG400026348 Solanum tuberosum HOM05D004616 ORTHO05D005860 1.6e-45 187.6 303 49.5
HPP92_001102 Vanilla planifolia HOM05D004616 ORTHO05D005860 3.6e-45 186.4 296 47.0
PGSC0003DMG400005888 Solanum tuberosum HOM05D004616 ORTHO05D005860 4.7e-45 186.0 301 47.8
Sopen11g027380 Solanum pennellii HOM05D004616 ORTHO05D005860 6.1e-45 185.7 301 49.8
Aa31LG5G8750 Aethionema arabicum HOM05D004616 ORTHO05D005860 8.0e-45 185.3 301 47.5
Nitab4.5_0000731g0060 Nicotiana tabacum HOM05D004616 ORTHO05D005860 2.3e-44 183.7 301 49.2
Lj3g0004055 Lotus japonicus HOM05D004616 ORTHO05D005860 5.2e-44 182.6 116 76.7
Lsat_1_v5_gn_6_38401 Lactuca sativa HOM05D004616 ORTHO05D005860 6.7e-44 182.2 303 47.2
CDE06G1573 Ceratophyllum demersum HOM05D004616 ORTHO05D005860 8.8e-44 181.8 298 46.6
Zm00001eb421980 Zea mays HOM05D004616 ORTHO05D005860 8.8e-44 181.8 300 45.7
AUR62001524 Chenopodium quinoa HOM05D004616 ORTHO05D005860 1.1e-43 181.4 325 46.8
AL4G21290 Arabidopsis lyrata HOM05D004616 ORTHO05D005860 7.4e-43 178.7 299 44.8
CAN.G745.9 Capsicum annuum HOM05D004616 ORTHO05D005860 1.7e-42 177.6 303 49.2
SGA_v2.0_scaffold100G29603 Striga asiatica HOM05D004616 ORTHO05D005860 8.2e-42 175.3 309 47.6
Zm00001eb083750 Zea mays HOM05D004616 ORTHO05D005860 2.6e-40 170.2 303 45.5
ATR0820G275 Amborella trichopoda HOM05D004616 ORTHO05D005860 3.5e-40 169.9 119 72.3
Carub.0004s0797 Capsella rubella HOM05D004616 ORTHO05D005860 5.9e-40 169.1 300 41.7
AT2G27350 Arabidopsis thaliana HOM05D004616 ORTHO05D005860 5.0e-39 166.0 299 43.8
Thhalv10001965m.g Eutrema salsugineum HOM05D004616 ORTHO05D005860 8.5e-39 165.2 301 41.9
unitig_899.g14957 Utricularia gibba HOM05D004616 ORTHO05D005860 1.1e-38 164.9 295 44.4
HanXRQChr13g0397601 Helianthus annuus HOM05D004616 ORTHO05D005860 4.7e-37 159.5 114 71.9
SEGI_03435 Sequoiadendron giganteum HOM05D004616 ORTHO05D005860 6.1e-37 159.1 130 63.8
Os04g0414100 Oryza sativa ssp. japonica HOM05D004616 ORTHO05D005860 1.0e-36 158.3 303 44.9
Sp4g10140 Schrenkiella parvula HOM05D004616 ORTHO05D005860 1.8e-36 157.5 307 41.7
AUR62020259 Chenopodium quinoa HOM05D004616 ORTHO05D005860 1.5e-35 154.5 268 49.3
CARHR119940 Cardamine hirsuta HOM05D004616 ORTHO05D005860 7.5e-35 152.1 300 42.7
Peaxi162Scf00091g00076 Petunia axillaris HOM05D004616 ORTHO05D005860 7.5e-35 152.1 283 45.2
HanXRQChr14g0438001 Helianthus annuus HOM05D004616 ORTHO05D005860 1.4e-33 147.9 98 74.5
BraA04t17661Z Brassica rapa HOM05D004616 ORTHO05D005860 1.8e-33 147.5 180 52.2
BcaC02g10868 Brassica carinata HOM05D004616 ORTHO05D005860 2.0e-32 144.1 181 51.4
C04p24240 Brassica napus HOM05D004616 ORTHO05D005860 2.0e-32 144.1 181 51.4
BcaB01g03068 Brassica carinata HOM05D004616 ORTHO05D005860 1.7e-31 141.0 302 44.7
BolC4t23922H Brassica oleracea HOM05D004616 ORTHO05D005860 1.7e-31 141.0 181 53.6
A04p20900 Brassica napus HOM05D004616 ORTHO05D005860 3.8e-31 139.8 134 56.0
A07p18140 Brassica napus HOM05D004616 ORTHO05D005860 8.5e-31 138.7 179 51.4
BraA07t29532Z Brassica rapa HOM05D004616 ORTHO05D005860 8.5e-31 138.7 179 51.4
BcaB02g10086 Brassica carinata HOM05D004616 ORTHO05D005860 1.9e-30 137.5 312 39.1
AagrBONN_evm.TU.Sc2ySwM_344.3429 Anthoceros agrestis HOM05D004616 ORTHO05D005860 1.6e-29 134.4 119 63.9
SGA_v2.0_scaffold22G09840 Striga asiatica HOM05D004616 ORTHO05D005860 1.6e-29 134.4 241 43.2
Pp3c7_5530 Physcomitrium patens HOM05D004616 ORTHO05D005860 2.7e-29 133.7 119 59.7
BolC4t27203H Brassica oleracea HOM05D004616 ORTHO05D005860 4.0e-28 129.8 179 44.7
Migut.D02430 Erythranthe guttata HOM05D004616 ORTHO05D005860 2.0e-27 127.5 297 39.1
Mapoly0015s0108 Marchantia polymorpha HOM05D004616 ORTHO05D005860 1.3e-26 124.8 106 61.3
BcaB06g28144 Brassica carinata HOM05D004616 ORTHO05D005860 2.8e-26 123.6 299 37.1
C04p56710 Brassica napus HOM05D004616 ORTHO05D005860 2.8e-26 123.6 299 37.1
Ah.08g223540 Amaranthus hybridus HOM05D004616 ORTHO05D005860 4.2e-22 109.8 64 82.8
SMO361G0078 Selaginella moellendorffii HOM05D004616 ORTHO05D005860 4.2e-22 109.8 132 47.7
Psat5g173040 Pisum sativum HOM05D004616 ORTHO05D005860 6.3e-18 95.9 68 69.1
Rhsim07G0227400 Rhododendron simsii HOM05D004616 ORTHO05D339556 4.3e-14 83.2 65 63.1
Lsat_1_v5_gn_8_23480 Lactuca sativa HOM05D004616 ORTHO05D005860 1.1e-09 68.6 38 81.6


User provided reference genes

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