Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc190.31 Carica papaya HOM05D006496 ORTHO05D008390 2.6e-136 488.8 264 100.0
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 5.3e-28 129.0 313 31.9
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 5.3e-28 129.0 313 31.9
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 4.9e-26 122.5 303 32.0
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 7.9e-24 115.2 272 31.6
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 6.9e-20 102.1 236 32.6
Glyma.07G118700 Glycine max HOM05D006496 ORTHO05D008390 2.0e-19 100.5 252 36.5
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 3.4e-19 99.8 284 31.3
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 3.4e-19 99.8 262 29.8
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 3.4e-19 99.8 270 32.2
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 5.8e-19 99.0 293 30.0
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 1.0e-18 98.2 301 29.2
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 2.2e-18 97.1 280 30.0
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 6.5e-18 95.5 226 35.4
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 1.9e-17 94.0 281 31.0
QL01p033212 Quercus lobata HOM05D006496 ORTHO05D008390 3.2e-17 93.2 111 47.7
arahy.Tifrunner.gnm1.ann1.4RYS79 Arachis hypogaea HOM05D006496 ORTHO05D008390 1.6e-16 90.9 236 31.8
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.1e-16 90.5 276 30.8
CiPaw.13G099300 Carya illinoinensis HOM05D006496 ORTHO05D008390 2.7e-16 90.1 342 26.0
arahy.Tifrunner.gnm1.ann1.7PT1R0 Arachis hypogaea HOM05D006496 ORTHO05D008390 3.5e-16 89.7 237 33.3
TPR.G34303 Trifolium pratense HOM05D006496 ORTHO05D008390 3.5e-16 89.7 233 31.8
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 1.3e-15 87.8 231 30.7
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.8e-15 87.4 214 30.8
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 2.3e-15 87.0 261 29.5
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 3.0e-15 86.7 216 30.1
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.0e-15 86.7 306 31.4
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 5.1e-15 85.9 214 30.8
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 1.9e-14 84.0 221 32.6
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 3.3e-14 83.2 262 29.8
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 4.3e-14 82.8 311 30.9
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 5.7e-14 82.4 228 28.1
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 7.4e-14 82.0 218 33.9
VMungo1080G1046 Vigna mungo HOM05D006496 ORTHO05D008390 9.6e-14 81.6 253 26.9
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 1.6e-13 80.9 211 30.3
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 2.1e-13 80.5 229 32.3
EL10Ac7g15965 Beta vulgaris HOM05D006496 ORTHO05D008390 3.7e-13 79.7 248 28.6
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 3.7e-13 79.7 316 28.5
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 4.8e-13 79.3 264 27.3
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 6.3e-13 79.0 233 28.3
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 8.2e-13 78.6 223 28.7
C03p13280 Brassica napus HOM05D006496 ORTHO05D008390 1.1e-12 78.2 261 29.1
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.1e-12 78.2 235 28.5
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 1.8e-12 77.4 222 30.6
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 1.8e-12 77.4 220 30.9
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 2.4e-12 77.0 251 29.1
COL.COLO4_18451 Corchorus olitorius HOM05D006496 ORTHO05D008390 2.4e-12 77.0 70 55.7
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.4e-12 77.0 337 30.0
BcaC01g06549 Brassica carinata HOM05D006496 ORTHO05D008390 3.1e-12 76.6 247 29.6
Phvul.004G007200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 4.1e-12 76.3 218 28.9
VMungo0464G2068 Vigna mungo HOM05D006496 ORTHO05D008390 4.1e-12 76.3 218 29.4
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 6.9e-12 75.5 262 27.5
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 6.9e-12 75.5 221 30.3
Psat5g284120 Pisum sativum HOM05D006496 ORTHO05D008390 6.9e-12 75.5 235 29.8
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 2.0e-11 73.9 221 30.3
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 2.6e-11 73.6 221 30.3
ECA247G0375 Erigeron canadensis HOM05D006496 ORTHO05D008390 2.6e-11 73.6 240 29.6
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 3.4e-11 73.2 221 29.0
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 3.4e-11 73.2 268 27.6
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 4.5e-11 72.8 221 28.5
Carub.0008s2046 Capsella rubella HOM05D006496 ORTHO05D008390 4.5e-11 72.8 221 31.2
Duzib168G2252 Durio zibethinus HOM05D006496 ORTHO05D008390 4.5e-11 72.8 97 44.3
Thhalv10014093m.g Eutrema salsugineum HOM05D006496 ORTHO05D008390 4.5e-11 72.8 221 30.8
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 5.9e-11 72.4 221 29.4
CARHR273380 Cardamine hirsuta HOM05D006496 ORTHO05D008390 1.0e-10 71.6 222 29.7
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 1.0e-10 71.6 223 31.8
Thecc.09G327500 Theobroma cacao HOM05D006496 ORTHO05D008390 1.3e-10 71.2 97 47.4
Phvul.004G006200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 2.2e-10 70.5 222 29.3
Prupe.6G084500 Prunus persica HOM05D006496 ORTHO05D008390 2.2e-10 70.5 99 42.4
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 5.0e-10 69.3 95 41.1
Lj3g0006193 Lotus japonicus HOM05D006496 ORTHO05D008390 5.0e-10 69.3 83 47.0
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 8.5e-10 68.6 296 23.3
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 1.4e-09 67.8 296 24.0
Dinv06145 Davidia involucrata HOM05D006496 ORTHO05D008390 1.9e-09 67.4 93 41.9
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 3.2e-09 66.6 238 26.1
Phvul.L002943 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 5.5e-09 65.9 77 46.8
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 2.1e-08 63.9 71 45.1
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 2.1e-08 63.9 70 47.1
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 2.1e-08 63.9 237 26.2
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 2.1e-08 63.9 249 28.1
Sc06g0008220 Simmondsia chinensis HOM05D006496 ORTHO05D008390 2.7e-08 63.5 107 43.0
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 6.1e-08 62.4 74 45.9
FAN21G0875 Fragaria x ananassa HOM05D006496 ORTHO05D008390 7.9e-08 62.0 225 26.2
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 7.9e-08 62.0 64 46.9
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 1.0e-07 61.6 68 45.6
TPR.G34315 Trifolium pratense HOM05D006496 ORTHO05D008390 1.3e-07 61.2 60 55.0
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 2.3e-07 60.5 260 24.2
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 6.7e-07 58.9 256 27.3
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 8.7e-07 58.5 220 22.7
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 1.1e-06 58.2 100 39.0
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 1.9e-06 57.4 242 24.4
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 1.9e-06 57.4 295 25.4
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 2.5e-06 57.0 277 24.5
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 3.3e-06 56.6 78 46.2
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 3.3e-06 56.6 304 25.3
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 4.3e-06 56.2 79 39.2
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 5.7e-06 55.8 232 23.7
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 9.7e-06 55.1 58 44.8


User provided reference genes

Program Settings