Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc19.181 Carica papaya HOM05D005539 ORTHO05D006644 0.0e+00 1612.4 812 100.0
Ciclev10030725m.g Citrus clementina HOM05D005539 ORTHO05D006644 0.0e+00 1198.3 813 73.4
COL.COLO4_25704 Corchorus olitorius HOM05D005539 ORTHO05D006644 0.0e+00 1187.9 811 73.5
Gohir.A10G235300 Gossypium hirsutum HOM05D005539 ORTHO05D006644 0.0e+00 1181.0 816 72.2
Thecc.10G020000 Theobroma cacao HOM05D005539 ORTHO05D006644 0.0e+00 1179.9 811 73.0
Duzib106G1755 Durio zibethinus HOM05D005539 ORTHO05D006644 0.0e+00 1170.6 812 72.0
GSVIVG01032835001 Vitis vinifera HOM05D005539 ORTHO05D006644 0.0e+00 1169.8 812 71.4
Gohir.D10G247700 Gossypium hirsutum HOM05D005539 ORTHO05D006644 0.0e+00 1169.5 816 71.4
Atru.chr12.24 Acer truncatum HOM05D005539 ORTHO05D006644 0.0e+00 1166.0 813 71.7
Gorai.011G286200 Gossypium raimondii HOM05D005539 ORTHO05D006644 0.0e+00 1164.8 816 71.3
Manes.10G013600 Manihot esculenta HOM05D005539 ORTHO05D006644 0.0e+00 1162.9 812 71.3
CiPaw.01G297900 Carya illinoinensis HOM05D005539 ORTHO05D006644 0.0e+00 1152.5 815 70.6
Potri.010G189700 Populus trichocarpa HOM05D005539 ORTHO05D006644 0.0e+00 1149.8 814 71.1
Hma1.2p1_0703F.1_g206530 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 0.0e+00 1127.9 820 68.5
Prupe.2G249200 Prunus persica HOM05D005539 ORTHO05D006644 0.0e+00 1126.7 814 69.8
TAR369G0030 Trochodendron aralioides HOM05D005539 ORTHO05D006644 0.0e+00 1123.6 817 68.7
Potri.008G067600 Populus trichocarpa HOM05D005539 ORTHO05D006644 0.0e+00 1119.4 814 69.0
MD01G1152200 Malus domestica HOM05D005539 ORTHO05D006644 0.0e+00 1117.8 814 68.7
Sabra10G0146300 Salix brachista HOM05D005539 ORTHO05D006644 0.0e+00 1112.1 836 67.2
RcHm_v2.0_Chr1g0370081 Rosa chinensis HOM05D005539 ORTHO05D006644 0.0e+00 1100.5 813 68.3
CANSAT56G2522 Cannabis sativa HOM05D005539 ORTHO05D006644 0.0e+00 1092.0 811 68.6
FvH4_7g24380 Fragaria vesca HOM05D005539 ORTHO05D006644 0.0e+00 1091.6 813 68.3
FAN10G0075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1090.5 813 67.8
FAN01G2659 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1090.1 813 67.8
FAN03G1336 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1077.0 813 67.2
Eucgr.J00217 Eucalyptus grandis HOM05D005539 ORTHO05D006644 2.3e-308 1062.0 794 66.1
THA.LOC104826852 Tarenaya hassleriana HOM05D005539 ORTHO05D006644 1.7e-306 1055.8 818 65.3
Lj8A68G37 Lonicera japonica HOM05D005539 ORTHO05D006644 8.2e-306 1053.5 819 65.8
Nn2g13702 Nelumbo nucifera HOM05D005539 ORTHO05D006644 1.4e-305 1052.7 816 63.5
Sed0009998 Sechium edule HOM05D005539 ORTHO05D006644 1.8e-305 1052.4 820 65.2
Haze_17219 Corylus avellana HOM05D005539 ORTHO05D006644 4.1e-305 1051.2 878 62.4
PGR044G2440 Punica granatum HOM05D005539 ORTHO05D006644 5.0e-303 1044.3 817 65.5
CsaV3_5G010080 Cucumis sativus L. HOM05D005539 ORTHO05D006644 4.7e-301 1037.7 820 64.3
Rhsim09G0176800 Rhododendron simsii HOM05D005539 ORTHO05D006644 3.0e-300 1035.0 818 64.9
MELO3C025184.2 Cucumis melo HOM05D005539 ORTHO05D006644 8.8e-300 1033.5 821 64.2
Peaxi162Scf00825g00123 Petunia axillaris HOM05D005539 ORTHO05D006644 5.7e-299 1030.8 789 65.3
EL10Ac2g04818 Beta vulgaris HOM05D005539 ORTHO05D006644 1.1e-297 1026.5 823 63.4
Actinidia29697 Actinidia chinensis HOM05D005539 ORTHO05D006644 3.1e-297 1025.0 730 69.9
A10p30680 Brassica napus HOM05D005539 ORTHO05D006644 7.7e-296 1020.4 819 62.8
AUR62012239 Chenopodium quinoa HOM05D005539 ORTHO05D006644 7.7e-296 1020.4 825 63.0
Sp6g37210 Schrenkiella parvula HOM05D005539 ORTHO05D006644 1.3e-295 1019.6 817 62.4
Glyma.11G229000 Glycine max HOM05D005539 ORTHO05D006644 1.7e-295 1019.2 797 64.7
Phvul.001G242300 Phaseolus vulgaris HOM05D005539 ORTHO05D006644 1.7e-295 1019.2 812 63.8
Hund15944 Selenicereus undatus HOM05D005539 ORTHO05D006644 5.0e-295 1017.7 819 62.5
AL6G15570 Arabidopsis lyrata HOM05D005539 ORTHO05D006644 8.5e-295 1016.9 814 62.3
AUR62022871 Chenopodium quinoa HOM05D005539 ORTHO05D006644 1.1e-294 1016.5 836 62.6
Carub.0006s0457 Capsella rubella HOM05D005539 ORTHO05D006644 1.5e-294 1016.1 814 62.7
FAN06G4384 Fragaria x ananassa HOM05D005539 ORTHO05D006644 4.2e-294 1014.6 812 64.9
Thhalv10012715m.g Eutrema salsugineum HOM05D005539 ORTHO05D006644 1.2e-293 1013.1 814 61.9
AT5G05680 Arabidopsis thaliana HOM05D005539 ORTHO05D006644 4.7e-293 1011.1 814 62.3
Actinidia33928 Actinidia chinensis HOM05D005539 ORTHO05D006644 1.8e-292 1009.2 819 63.2
Aqoxy4G02586 Aquilegia oxysepala HOM05D005539 ORTHO05D006644 2.3e-292 1008.8 788 63.3
VMungo1383G3500 Vigna mungo HOM05D005539 ORTHO05D006644 3.0e-292 1008.4 812 63.1
Lj6g0015972 Lotus japonicus HOM05D005539 ORTHO05D006644 6.7e-292 1007.3 805 64.6
C09p71160 Brassica napus HOM05D005539 ORTHO05D006644 4.4e-291 1004.6 819 61.5
Lalb_Chr15g0084151 Lupinus albus HOM05D005539 ORTHO05D006644 2.2e-290 1002.3 814 63.1
Oeu064386.1 Olea europaea HOM05D005539 ORTHO05D006644 2.8e-290 1001.9 823 63.2
Sopen11g010350 Solanum pennellii HOM05D005539 ORTHO05D006644 8.2e-290 1000.3 811 62.6
BolC9t59878H Brassica oleracea HOM05D005539 ORTHO05D006644 2.4e-289 998.8 845 60.1
CAN.G1694.1 Capsicum annuum HOM05D005539 ORTHO05D006644 2.4e-289 998.8 816 62.5
ECA238G2434 Erigeron canadensis HOM05D005539 ORTHO05D006644 9.1e-289 996.9 835 61.1
arahy.Tifrunner.gnm1.ann1.4ME2IF Arachis hypogaea HOM05D005539 ORTHO05D006644 2.6e-288 995.3 796 62.8
CARHR207600 Cardamine hirsuta HOM05D005539 ORTHO05D006644 2.6e-288 995.3 815 61.1
arahy.Tifrunner.gnm1.ann1.W7ADHZ Arachis hypogaea HOM05D005539 ORTHO05D006644 3.5e-288 995.0 796 62.6
Sc14g0005370 Simmondsia chinensis HOM05D005539 ORTHO05D006644 3.5e-288 995.0 787 63.0
DCAR_011807 Daucus carota HOM05D005539 ORTHO05D006644 7.7e-288 993.8 812 61.6
Lsat_1_v5_gn_2_122921 Lactuca sativa HOM05D005539 ORTHO05D006644 2.2e-287 992.3 835 60.8
Ca_15119_v3 Cicer arietinum L. HOM05D005539 ORTHO05D006644 1.2e-285 986.5 797 63.9
vmacro10050 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 4.7e-285 984.6 811 63.4
Cc02_g06620 Coffea canephora HOM05D005539 ORTHO05D006644 2.0e-283 979.2 793 62.5
Medtr3g070390 Medicago truncatula HOM05D005539 ORTHO05D006644 3.4e-283 978.4 806 62.2
ClCG07G004120 Citrullus lanatus HOM05D005539 ORTHO05D006644 1.2e-280 969.9 820 61.5
Migut.F01380 Erythranthe guttata HOM05D005539 ORTHO05D006644 2.7e-280 968.8 819 61.5
HanXRQChr14g0459831 Helianthus annuus HOM05D005539 ORTHO05D006644 5.9e-280 967.6 830 59.5
Dinv17988 Davidia involucrata HOM05D005539 ORTHO05D006644 1.3e-279 966.5 735 66.7
Psat5g128120 Pisum sativum HOM05D005539 ORTHO05D006644 1.3e-279 966.5 799 62.5
MSTRG.8325 Avicennia marina HOM05D005539 ORTHO05D006644 3.2e-278 961.8 800 61.1
PSO339G2908 Papaver somniferum HOM05D005539 ORTHO05D006644 1.4e-276 956.4 825 59.4
BcaB05g21701 Brassica carinata HOM05D005539 ORTHO05D006644 3.1e-273 945.3 814 59.5
CSS0043358 Camellia sinensis var. sinensis HOM05D005539 ORTHO05D006644 7.0e-273 944.1 821 61.4
PSO384G3240 Papaver somniferum HOM05D005539 ORTHO05D006644 1.6e-269 932.9 828 58.3
Aa31LG11G6690 Aethionema arabicum HOM05D005539 ORTHO05D006644 1.0e-268 930.2 813 58.5
vmacro10051 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 6.6e-255 884.4 861 56.7
Sc14g0005420 Simmondsia chinensis HOM05D005539 ORTHO05D006644 2.5e-254 882.5 736 59.9
Ah.04g164520 Amaranthus hybridus HOM05D005539 ORTHO05D006644 7.3e-254 880.9 828 56.6
Cfa001325 Carpinus fangiana HOM05D005539 ORTHO05D006644 7.3e-254 880.9 616 71.3
BcaC06g32273 Brassica carinata HOM05D005539 ORTHO05D006644 9.8e-251 870.5 819 56.5
SGA_v2.0_scaffold76G25107 Striga asiatica HOM05D005539 ORTHO05D006644 1.1e-249 867.1 881 52.7
FAN06G2075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.1e-246 857.1 619 70.3
FAN10G4325 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.1e-246 857.1 619 70.3
FAN06G5029 Fragaria x ananassa HOM05D005539 ORTHO05D006644 6.0e-240 834.7 620 68.9
Hma1.2p1_0703F.1_g206540 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 2.4e-233 812.8 592 68.6
BcaC06g32275 Brassica carinata HOM05D005539 ORTHO05D006644 1.4e-228 797.0 625 64.3
TPR.G2533 Trifolium pratense HOM05D005539 ORTHO05D006644 1.9e-222 776.5 620 64.4
ATR0193G007 Amborella trichopoda HOM05D005539 ORTHO05D006644 5.7e-206 721.8 717 52.3
Os04g0608400 Oryza sativa ssp. japonica HOM05D005539 ORTHO05D006644 3.7e-197 692.6 766 48.2
HPP92_019887 Vanilla planifolia HOM05D005539 ORTHO05D006644 2.7e-192 676.4 822 44.4
unitig_0.g238 Utricularia gibba HOM05D005539 ORTHO05D006644 1.4e-191 674.1 800 48.2
BraA10t45109Z Brassica rapa HOM05D005539 ORTHO05D006644 1.3e-189 667.5 549 62.7
Zm00001eb430560 Zea mays HOM05D005539 ORTHO05D006644 2.5e-185 653.3 721 47.9
SHI03446 Sapria himalayana HOM05D005539 ORTHO05D006644 8.8e-159 565.1 472 58.9
Dinv17987 Davidia involucrata HOM05D005539 ORTHO05D006644 4.4e-158 562.8 404 69.3
Solyc11g020190.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.4e-156 557.8 482 61.0
Dinv17986 Davidia involucrata HOM05D005539 ORTHO05D006644 1.0e-154 551.6 395 71.1
CDE04G1676 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 2.2e-149 533.9 548 50.4
QL08p063092 Quercus lobata HOM05D005539 ORTHO05D006644 1.1e-135 488.4 335 69.9
Solyc11g008120.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.2e-128 464.9 394 61.4
Mapoly0043s0044 Marchantia polymorpha HOM05D005539 ORTHO05D006644 1.6e-128 464.5 783 36.9
Nitab4.5_0001171g0020 Nicotiana tabacum HOM05D005539 ORTHO05D006644 6.2e-128 462.6 347 63.7
Nitab4.5_0003886g0070 Nicotiana tabacum HOM05D005539 ORTHO05D006644 4.0e-127 459.9 348 64.1
AagrBONN_evm.TU.Sc2ySwM_362.2924 Anthoceros agrestis HOM05D005539 ORTHO05D006644 5.8e-118 429.5 780 36.5
Pp3c6_24520 Physcomitrium patens HOM05D005539 ORTHO05D006644 1.5e-113 414.8 776 35.6
HanXRQChr13g0392111 Helianthus annuus HOM05D005539 ORTHO05D006644 5.1e-98 363.2 480 45.6
Glyma.18G028233 Glycine max HOM05D005539 ORTHO05D006644 2.0e-94 351.3 276 64.1
SEGI_35888 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 9.0e-87 325.9 456 39.9
Nitab4.5_0000395g0010 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.7e-85 321.6 301 56.5
Glyma.18G028167 Glycine max HOM05D005539 ORTHO05D006644 6.5e-85 319.7 253 62.5
vmacro22159 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 1.0e-77 295.8 377 47.5
CBR_g22013 Chara braunii HOM05D005539 ORTHO05D006644 7.2e-76 289.7 846 29.0
Solyc11g008110.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.5e-73 282.0 183 69.4
SEGI_33727 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.0e-66 259.2 326 44.2
SEGI_27471 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 9.1e-63 246.1 308 45.8
FAN06G2580 Fragaria x ananassa HOM05D005539 ORTHO05D006644 5.5e-60 236.9 193 61.7
CDE04G3215 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 9.4e-60 236.1 233 48.9
Sabra08G0049700 Salix brachista HOM05D005539 ORTHO05D006644 7.0e-55 219.9 233 57.1
Solyc11g020180.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 9.1e-55 219.5 144 69.4
MD07G1220900 Malus domestica HOM05D005539 ORTHO05D006644 2.5e-52 211.5 178 62.4
Nitab4.5_0001171g0030 Nicotiana tabacum HOM05D005539 ORTHO05D006644 2.7e-46 191.4 165 60.6
Hma1.2p1_0703F.1_g206520 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 6.5e-45 186.8 160 58.8
Nitab4.5_0003886g0090 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.2e-43 182.6 165 57.6
HPP92_019878 Vanilla planifolia HOM05D005539 ORTHO05D006644 2.0e-41 175.3 214 47.2
SEGI_03850 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 4.1e-39 167.5 231 39.0
Solyc11g020160.2 Solanum lycopersicum HOM05D005539 ORTHO05D006644 6.6e-37 160.2 153 54.9
MD07G1221200 Malus domestica HOM05D005539 ORTHO05D006644 2.2e-24 118.6 152 48.0
SHI03444 Sapria himalayana HOM05D000002 ORTHO05D000001 4.0e-18 97.8 111 45.0
Cre06.g278900 Chlamydomonas reinhardtii HOM05D005539 ORTHO05D006644 4.3e-12 77.8 404 22.0
MCO09G726 Micromonas commoda HOM05D005539 ORTHO05D006644 7.3e-12 77.0 232 26.7
C03p17190 Brassica napus HOM05D001640 ORTHO05D001612 1.6e-11 75.9 101 43.6
Solyc11g020170.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 3.4e-09 68.2 68 50.0
BolC3t14133H Brassica oleracea HOM05D001640 ORTHO05D001612 7.6e-09 67.0 103 39.8


User provided reference genes

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