Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc173.13 Carica papaya HOM05D003404 ORTHO05D004052 8.9e-182 640.2 333 100.0
Thecc.06G019500 Theobroma cacao HOM05D003404 ORTHO05D004052 2.6e-173 612.1 329 95.7
Phvul.003G076300 Phaseolus vulgaris HOM05D003404 ORTHO05D004052 5.8e-173 610.9 329 95.7
arahy.Tifrunner.gnm1.ann1.F0HWYS Arachis hypogaea HOM05D003404 ORTHO05D004052 7.5e-173 610.5 329 95.7
arahy.Tifrunner.gnm1.ann1.TT7XH0 Arachis hypogaea HOM05D003404 ORTHO05D004052 7.5e-173 610.5 329 95.7
VMungo1215G2990 Vigna mungo HOM05D003404 ORTHO05D004052 7.5e-173 610.5 329 95.7
Glyma.17G002000 Glycine max HOM05D003404 ORTHO05D004052 1.7e-172 609.4 329 95.4
ClCG10G007400 Citrullus lanatus HOM05D003404 ORTHO05D004052 4.9e-172 607.8 329 95.4
Prupe.2G322700 Prunus persica HOM05D003404 ORTHO05D004052 4.9e-172 607.8 329 95.1
Sed0011322 Sechium edule HOM05D003404 ORTHO05D004052 6.4e-172 607.4 329 95.1
Potri.004G229300 Populus trichocarpa HOM05D003404 ORTHO05D004052 8.3e-172 607.1 329 95.1
CsaV3_3G006660 Cucumis sativus L. HOM05D003404 ORTHO05D004052 1.4e-171 606.3 329 95.1
MELO3C016463.2 Cucumis melo HOM05D003404 ORTHO05D004052 1.9e-171 605.9 329 95.1
Ca_13528_v3 Cicer arietinum L. HOM05D003404 ORTHO05D004052 3.2e-171 605.1 329 94.8
Haze_09982 Corylus avellana HOM05D003404 ORTHO05D004052 7.0e-171 604.0 329 95.4
Lalb_Chr15g0090861 Lupinus albus HOM05D003404 ORTHO05D004052 1.2e-170 603.2 329 94.5
CiPaw.05G001400 Carya illinoinensis HOM05D003404 ORTHO05D004052 1.6e-170 602.8 329 94.5
COL.COLO4_31122 Corchorus olitorius HOM05D003404 ORTHO05D004052 1.6e-170 602.8 329 94.5
TPR.G6014 Trifolium pratense HOM05D003404 ORTHO05D004052 2.1e-170 602.4 329 94.2
Ciclev10000063m.g Citrus clementina HOM05D003404 ORTHO05D004052 2.7e-170 602.1 329 93.9
Manes.07G030800 Manihot esculenta HOM05D003404 ORTHO05D004052 2.7e-170 602.1 329 94.8
Medtr4g134620 Medicago truncatula HOM05D003404 ORTHO05D004052 2.7e-170 602.1 329 94.2
Cfa004441 Carpinus fangiana HOM05D003404 ORTHO05D004052 3.5e-170 601.7 329 94.8
Duzib192G0569 Durio zibethinus HOM05D003404 ORTHO05D004052 3.5e-170 601.7 329 94.8
Duzib235G1119 Durio zibethinus HOM05D003404 ORTHO05D004052 4.6e-170 601.3 329 93.9
Sabra03G0000100 Salix brachista HOM05D003404 ORTHO05D004052 4.6e-170 601.3 329 94.2
FvH4_7g33400 Fragaria vesca HOM05D003404 ORTHO05D004052 7.8e-170 600.5 329 94.2
FAN01G2685 Fragaria x ananassa HOM05D003404 ORTHO05D004052 7.8e-170 600.5 329 94.2
GSVIVG01023143001 Vitis vinifera HOM05D003404 ORTHO05D004052 7.8e-170 600.5 329 94.8
Gohir.D06G150300 Gossypium hirsutum HOM05D003404 ORTHO05D004052 1.0e-169 600.1 329 94.2
Gorai.010G175500 Gossypium raimondii HOM05D003404 ORTHO05D004052 1.0e-169 600.1 329 94.2
Gohir.A06G144600 Gossypium hirsutum HOM05D003404 ORTHO05D004052 1.3e-169 599.7 329 93.9
Lalb_Chr18g0061171 Lupinus albus HOM05D003404 ORTHO05D004052 1.3e-169 599.7 329 93.6
Lj4g0008829 Lotus japonicus HOM05D003404 ORTHO05D004052 1.7e-169 599.4 329 93.6
Psat4g002640 Pisum sativum HOM05D003404 ORTHO05D004052 3.0e-169 598.6 329 93.6
Potri.003G000500 Populus trichocarpa HOM05D003404 ORTHO05D004052 3.0e-169 598.6 329 94.2
FAN03G0122 Fragaria x ananassa HOM05D003404 ORTHO05D004052 6.6e-169 597.4 329 93.9
RcHm_v2.0_Chr1g0383371 Rosa chinensis HOM05D003404 ORTHO05D004052 6.6e-169 597.4 329 93.6
Actinidia26195 Actinidia chinensis HOM05D003404 ORTHO05D004052 1.5e-168 596.3 329 93.6
Atru.chr6.225 Acer truncatum HOM05D003404 ORTHO05D004052 2.5e-168 595.5 329 93.3
CANSAT21G0984 Cannabis sativa HOM05D003404 ORTHO05D004052 4.3e-168 594.7 329 93.0
CSS0015679 Camellia sinensis var. sinensis HOM05D003404 ORTHO05D004052 7.3e-168 594.0 329 93.9
MD01G1232300 Malus domestica HOM05D003404 ORTHO05D004052 1.2e-167 593.2 329 93.3
Rhsim05G0115300 Rhododendron simsii HOM05D003404 ORTHO05D004052 1.2e-167 593.2 329 93.3
MD07G1304100 Malus domestica HOM05D003404 ORTHO05D004052 4.7e-167 591.3 329 93.0
TWI59G0557 Tripterygium wilfordii HOM05D003404 ORTHO05D004052 2.3e-166 589.0 329 93.6
EL10Ac6g13982 Beta vulgaris HOM05D003404 ORTHO05D004052 1.2e-165 586.6 329 90.6
DCAR_001727 Daucus carota HOM05D003404 ORTHO05D004052 1.5e-165 586.3 329 91.5
TWI14G1077 Tripterygium wilfordii HOM05D003404 ORTHO05D004052 2.0e-165 585.9 329 93.0
AUR62042960 Chenopodium quinoa HOM05D003404 ORTHO05D004052 2.6e-165 585.5 329 90.3
HanXRQChr04g0110261 Helianthus annuus HOM05D003404 ORTHO05D004052 1.3e-164 583.2 329 90.3
Dinv29680 Davidia involucrata HOM05D003404 ORTHO05D004052 1.7e-164 582.8 329 91.8
Sc12g0008780 Simmondsia chinensis HOM05D003404 ORTHO05D004052 5.4e-163 577.8 329 89.1
ECA236G3319 Erigeron canadensis HOM05D003404 ORTHO05D004052 2.1e-162 575.9 329 90.3
PGR042G3714 Punica granatum HOM05D003404 ORTHO05D004052 2.1e-162 575.9 329 90.6
Nn5g27178 Nelumbo nucifera HOM05D003404 ORTHO05D004052 3.5e-162 575.1 332 90.7
HanXRQChr15g0469691 Helianthus annuus HOM05D003404 ORTHO05D004052 6.0e-162 574.3 329 89.4
Dinv29635 Davidia involucrata HOM05D003404 ORTHO05D004052 1.3e-161 573.2 319 92.8
Eucgr.G00074 Eucalyptus grandis HOM05D003404 ORTHO05D004052 2.3e-161 572.4 329 88.8
Nitab4.5_0003247g0080 Nicotiana tabacum HOM05D003404 ORTHO05D004052 8.6e-161 570.5 329 90.3
Cc02_g23620 Coffea canephora HOM05D003404 ORTHO05D004052 1.5e-160 569.7 329 89.4
MSTRG.16466 Avicennia marina HOM05D003404 ORTHO05D004052 3.3e-160 568.5 329 90.6
TAR376G0925 Trochodendron aralioides HOM05D003404 ORTHO05D004052 3.3e-160 568.5 332 90.1
Peaxi162Scf00011g01927 Petunia axillaris HOM05D003404 ORTHO05D004052 1.1e-158 563.5 329 89.1
PSO761G0035 Papaver somniferum HOM05D003404 ORTHO05D004052 1.4e-158 563.1 332 89.2
CAN.G855.55 Capsicum annuum HOM05D003404 ORTHO05D004052 3.1e-158 562.0 329 89.1
MBI06_g16624_MAGBIO Magnolia biondii HOM05D003404 ORTHO05D004052 4.0e-158 561.6 332 88.0
PSO210G7577 Papaver somniferum HOM05D003404 ORTHO05D004052 6.8e-158 560.8 332 88.6
Migut.B00720 Erythranthe guttata HOM05D003404 ORTHO05D004052 2.0e-157 559.3 329 88.4
Aqoxy5G01845 Aquilegia oxysepala HOM05D003404 ORTHO05D004052 4.4e-157 558.1 332 88.3
SGA_v2.0_scaffold254G45235 Striga asiatica HOM05D003404 ORTHO05D004052 3.8e-156 555.1 329 88.8
Solyc01g103010.4 Solanum lycopersicum HOM05D003404 ORTHO05D004052 6.4e-156 554.3 329 88.4
Sopen01g045420 Solanum pennellii HOM05D003404 ORTHO05D004052 1.9e-155 552.7 329 88.4
THA.LOC104805135 Tarenaya hassleriana HOM05D003404 ORTHO05D004052 1.9e-155 552.7 329 87.5
vmacro19829 Vaccinium macrocarpon HOM05D003404 ORTHO05D004052 2.4e-155 552.4 368 81.5
Aa31LG2G7580 Aethionema arabicum HOM05D003404 ORTHO05D004052 7.8e-154 547.4 329 86.0
QL02p103380 Quercus lobata HOM05D003404 ORTHO05D004052 1.3e-153 546.6 296 96.3
Glyma.07G272400 Glycine max HOM05D003404 ORTHO05D004052 2.3e-153 545.8 296 95.6
BcaC06g31225 Brassica carinata HOM05D003404 ORTHO05D004052 3.9e-153 545.0 329 85.4
Sp2g13790 Schrenkiella parvula HOM05D003404 ORTHO05D004052 3.9e-153 545.0 329 85.7
A06p43570 Brassica napus HOM05D003404 ORTHO05D004052 5.1e-153 544.7 329 85.4
C07p33270 Brassica napus HOM05D003404 ORTHO05D004052 5.1e-153 544.7 329 85.4
BolC7t43839H Brassica oleracea HOM05D003404 ORTHO05D004052 5.1e-153 544.7 329 85.4
BraA06t27242Z Brassica rapa HOM05D003404 ORTHO05D004052 5.1e-153 544.7 329 85.4
ATR1089G109 Amborella trichopoda HOM05D003404 ORTHO05D004052 6.6e-153 544.3 332 85.8
A02p33040 Brassica napus HOM05D003404 ORTHO05D004052 1.5e-152 543.1 329 85.4
BolC2t11162H Brassica oleracea HOM05D003404 ORTHO05D004052 1.5e-152 543.1 329 85.4
Thhalv10003535m.g Eutrema salsugineum HOM05D003404 ORTHO05D004052 3.3e-152 542.0 329 84.8
BraA02t08325Z Brassica rapa HOM05D003404 ORTHO05D004052 4.3e-152 541.6 329 85.1
CARHR145090 Cardamine hirsuta HOM05D003404 ORTHO05D004052 4.3e-152 541.6 329 84.5
C02p50810 Brassica napus HOM05D003404 ORTHO05D004052 5.6e-152 541.2 329 85.1
Carub.0005s0156 Capsella rubella HOM05D003404 ORTHO05D004052 7.3e-152 540.8 329 85.1
BcaC03g17156 Brassica carinata HOM05D003404 ORTHO05D004052 1.2e-151 540.0 329 85.1
Os02g0167700 Oryza sativa ssp. japonica HOM05D003404 ORTHO05D004052 2.8e-151 538.9 332 84.9
AT2G02560 Arabidopsis thaliana HOM05D003404 ORTHO05D004052 8.1e-151 537.3 329 84.2
BcaB07g30328 Brassica carinata HOM05D003404 ORTHO05D004052 8.1e-151 537.3 329 84.2
THA.LOC104801780 Tarenaya hassleriana HOM05D003404 ORTHO05D004052 1.4e-150 536.6 328 84.5
Zm00001eb207390 Zea mays HOM05D003404 ORTHO05D004052 3.1e-150 535.4 332 83.7
AL5G11830 Arabidopsis lyrata HOM05D003404 ORTHO05D004052 4.0e-150 535.0 329 84.2
HPP92_001482 Vanilla planifolia HOM05D003404 ORTHO05D004052 4.4e-149 531.6 332 84.0
AUR62043067 Chenopodium quinoa HOM05D003404 ORTHO05D004052 3.9e-145 518.5 297 89.2
Lj5C285G4 Lonicera japonica HOM05D003404 ORTHO05D004052 1.1e-144 516.9 329 83.9
SHI05020 Sapria himalayana HOM05D003404 ORTHO05D004052 4.9e-140 501.5 329 77.5
unitig_27.g24934 Utricularia gibba HOM05D003404 ORTHO05D004052 5.4e-139 498.0 329 81.2
Lsat_1_v5_gn_9_83361 Lactuca sativa HOM05D003404 ORTHO05D004052 9.0e-134 480.7 329 77.2
Mapoly0029s0003 Marchantia polymorpha HOM05D003404 ORTHO05D004052 4.9e-132 474.9 331 75.2
AagrBONN_evm.TU.Sc2ySwM_228.3869 Anthoceros agrestis HOM05D003404 ORTHO05D004052 1.1e-128 463.8 331 73.1
Pp3c4_6460 Physcomitrium patens HOM05D003404 ORTHO05D004052 3.7e-127 458.8 336 72.9
SMO364G0878 Selaginella moellendorffii HOM05D003404 ORTHO05D004052 3.7e-127 458.8 331 73.7
Pp3c8_3260 Physcomitrium patens HOM05D003404 ORTHO05D004052 6.2e-127 458.0 333 73.3
CDE05G1207 Ceratophyllum demersum HOM05D003404 ORTHO05D004052 4.5e-125 451.8 332 74.4
CBR_g18772 Chara braunii HOM05D003404 ORTHO05D004052 4.1e-110 402.1 325 64.6
Ah.03g136760 Amaranthus hybridus HOM05D003404 ORTHO05D004052 1.5e-104 383.6 240 83.3
Sabra01G0174400 Salix brachista HOM05D003404 ORTHO05D004052 4.8e-103 378.6 201 93.0
arahy.Tifrunner.gnm1.ann1.GG9Z8N Arachis hypogaea HOM05D003404 ORTHO05D004052 6.1e-98 361.7 303 68.3
Actinidia01636 Actinidia chinensis HOM05D003404 ORTHO05D004052 2.6e-96 356.3 329 64.4
Cre03.g177053 Chlamydomonas reinhardtii HOM05D003404 ORTHO05D004052 2.3e-81 306.6 325 52.3
HPP92_028449 Vanilla planifolia HOM05D003404 ORTHO05D004052 3.4e-80 302.8 202 77.2
Haze_26135 Corylus avellana HOM05D003404 ORTHO05D004052 1.5e-75 287.3 331 46.2
QL09p011372 Quercus lobata HOM05D003404 ORTHO05D004052 8.9e-73 278.1 276 59.8
Oeu028474.1 Olea europaea HOM05D003404 ORTHO05D004052 5.4e-70 268.9 170 85.9
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 7.8e-69 265.0 277 57.8
PRCOL_00003487 Prasinoderma coloniale HOM05D003404 ORTHO05D004052 2.3e-65 253.4 347 42.9
arahy.Tifrunner.gnm1.ann1.I4H71T Arachis hypogaea HOM05D003404 ORTHO05D004052 2.7e-61 240.0 155 83.9
Lsat_1_v5_gn_8_147900 Lactuca sativa HOM05D003404 ORTHO05D004052 1.5e-59 234.2 217 59.9
MCO07G702 Micromonas commoda HOM05D003404 ORTHO05D004052 3.3e-59 233.0 348 44.0
Thecc.06G018800 Theobroma cacao HOM05D003404 ORTHO05D004052 2.0e-56 223.8 128 89.8
Sabra01G0174500 Salix brachista HOM05D003404 ORTHO05D004052 1.3e-55 221.1 129 93.0
Lsat_1_v5_gn_3_57841 Lactuca sativa HOM05D003404 ORTHO05D004052 2.8e-50 203.4 195 59.5
Lsat_1_v5_gn_2_40780 Lactuca sativa HOM05D003404 ORTHO05D004052 1.4e-49 201.1 210 55.7
HPP92_001465 Vanilla planifolia HOM05D003404 ORTHO05D004052 1.6e-34 151.0 107 72.0
CSS0022364 Camellia sinensis var. sinensis HOM05D003404 ORTHO05D000001 4.2e-30 136.3 105 70.5
Lsat_1_v5_gn_7_61421 Lactuca sativa HOM05D003404 ORTHO05D004052 9.3e-30 135.2 79 82.3
Cfa023835 Carpinus fangiana HOM05D003404 ORTHO05D004052 3.1e-25 120.2 305 29.2
AagrBONN_evm.TU.Sc2ySwM_117.1502 Anthoceros agrestis HOM05D003404 ORTHO05D016498 4.5e-24 116.3 100 61.0
HPP92_027407 Vanilla planifolia HOM05D003404 ORTHO05D036552 1.9e-22 110.9 60 85.0
HPP92_010313 Vanilla planifolia HOM05D003404 ORTHO05D020285 6.7e-20 102.4 123 53.7
PSO357G0006 Papaver somniferum HOM05D003404 ORTHO05D004052 2.7e-13 80.5 59 71.2
Actinidia31246 Actinidia chinensis HOM05D003404 ORTHO05D004052 3.5e-13 80.1 97 53.6
Lsat_1_v5_gn_5_32960 Lactuca sativa HOM05D003404 ORTHO05D020285 1.1e-11 75.1 47 83.0
HPP92_027749 Vanilla planifolia HOM05D028814 ORTHO05D020285 9.6e-11 72.0 87 46.0
MBI07_g25511_MAGBIO Magnolia biondii HOM05D003404 ORTHO05D036552 1.8e-09 67.8 33 97.0


User provided reference genes

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