Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 3436.0 1851 100.0
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 2550.0 1933 72.7
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 2475.3 1933 71.0
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 2473.7 1915 71.4
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2454.9 1934 70.5
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2443.7 1934 70.6
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2437.5 1937 70.0
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 2430.6 1943 69.9
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2427.5 1940 69.5
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 2417.1 1961 69.5
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 2414.4 1925 70.4
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 2409.4 1789 71.8
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2391.7 1942 68.7
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2378.2 1932 69.0
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 2362.0 1929 68.4
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2360.1 1932 68.2
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 2330.4 1908 68.9
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 2321.6 1909 68.9
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2315.0 1935 67.6
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2314.7 1934 67.8
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2313.5 1936 67.6
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 2305.8 1961 66.7
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 2303.5 2027 65.0
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2301.2 1941 67.7
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2298.1 1937 67.8
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 2296.5 1937 67.6
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2293.1 1918 67.5
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2289.6 1941 66.6
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2285.8 1916 67.3
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 2281.1 1781 69.5
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 2279.2 1870 68.6
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 2266.5 1948 66.2
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2263.4 1924 66.2
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 2263.0 1944 65.7
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 2261.1 1819 68.0
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2252.2 1928 66.4
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 2245.3 1965 64.9
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 2239.9 1927 66.1
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2239.5 1930 65.9
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2232.6 1927 65.9
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2224.5 1930 65.2
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 2220.7 1938 64.0
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2214.5 1933 65.2
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 2207.9 1924 65.5
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2207.9 1936 65.0
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2200.2 1919 65.6
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2174.1 1911 65.3
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 2165.6 1884 66.1
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2161.7 1906 64.0
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 2150.6 1906 64.6
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 2148.6 1933 64.3
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2142.5 1933 63.5
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 2139.8 1895 64.6
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2128.2 1806 65.0
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2126.3 1932 62.1
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 2125.9 1820 64.7
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 2120.1 1940 62.7
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 2119.4 1921 63.2
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 2109.3 1913 63.1
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2100.1 1920 63.2
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2095.1 1928 62.2
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2085.8 1935 61.5
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 2085.8 1850 65.0
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 2082.0 1941 62.4
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 2080.8 1948 60.9
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2066.2 1927 61.2
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 2050.8 1820 63.3
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 2045.8 1910 62.3
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 2039.2 1901 61.5
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 2032.3 1871 62.9
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 2018.8 1814 61.6
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 2015.4 1945 60.5
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 2010.7 1880 61.6
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 1994.9 1899 61.3
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 1987.6 1784 61.8
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 1958.0 1910 60.5
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1951.8 1939 59.4
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 1938.3 1858 60.2
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1934.8 1923 58.7
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 1928.3 1886 60.9
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1922.1 1928 58.3
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1921.4 1847 59.2
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 1917.1 1955 58.2
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 1908.3 1973 57.7
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1906.7 1971 58.4
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1906.3 1956 57.8
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 1903.3 1843 58.7
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1896.3 1943 57.6
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1896.3 1943 57.8
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1891.7 1617 64.8
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1883.2 1931 57.6
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1877.4 1931 57.5
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 1862.8 1690 62.2
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 1860.9 1903 58.3
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 1860.5 1937 57.9
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1854.7 1953 57.0
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 1842.4 1893 57.6
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1832.8 1892 57.1
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1832.4 1878 57.6
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1831.6 1962 56.2
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1831.6 1962 56.2
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1826.6 1965 56.4
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1813.9 1937 55.6
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1801.2 1863 56.3
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1644.4 1242 71.2
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1621.7 1947 52.2
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1567.7 1940 49.6
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1564.3 1465 61.8
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1521.1 1828 49.6
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1452.6 2020 47.0
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1451.8 1229 66.4
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1434.5 1884 47.1
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1434.5 1884 47.1
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1427.9 1942 47.4
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1419.4 1869 47.4
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1401.7 1482 57.0
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 0.0e+00 1351.3 1464 55.5
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 0.0e+00 1345.1 1933 46.6
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1321.2 1233 61.6
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 0.0e+00 1302.0 1081 68.1
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1224.2 1776 44.0
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1200.7 1040 65.6
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1102.4 1285 55.8
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1078.2 867 68.5
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 1.2e-296 1024.2 920 62.2
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 4.8e-293 1012.3 1652 42.3
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 1.5e-291 1007.3 840 67.5
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 3.7e-277 959.5 1698 38.9
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 4.8e-277 959.1 1423 46.3
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 7.5e-254 882.1 877 58.0
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 2.0e-251 874.0 721 66.7
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.3e-210 738.4 618 65.0
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 2.5e-193 681.0 657 55.9
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 3.3e-193 680.6 720 54.6
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 8.7e-186 656.0 657 54.5
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 3.5e-179 634.0 496 64.7
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 2.3e-170 604.7 625 55.0
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.3e-165 589.0 456 71.5
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 5.1e-154 550.4 562 58.4
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 4.2e-148 530.8 561 57.0
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 2.4e-127 461.8 426 61.3
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 4.6e-110 404.4 1268 28.0
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 1.0e-93 350.1 1014 28.8
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 1.5e-92 346.3 306 60.5
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 1.9e-84 319.3 866 32.6
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 1.2e-78 300.1 2084 22.8
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 6.6e-77 294.3 224 72.3
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 8.7e-77 293.9 457 40.5
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 8.7e-69 267.3 197 74.1
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 2.5e-68 265.8 274 67.2
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 1.5e-65 256.5 366 45.1
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 1.8e-61 243.0 261 49.4
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 1.8e-53 216.5 191 82.2
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 8.7e-53 214.2 275 46.9
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 1.9e-47 196.4 226 57.1
Dinv03356 Davidia involucrata HOM05D002037 ORTHO05D005261 1.5e-28 133.7 161 46.6
Dinv42062 Davidia involucrata HOM05D000142 ORTHO05D000124 1.3e-16 94.0 59 72.9
Atru.chr7.2708 Acer truncatum HOM05D002037 ORTHO05D005261 2.9e-16 92.8 131 67.2
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 6.5e-16 91.7 79 62.0
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 1.6e-14 87.0 65 69.2
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 1.4e-13 84.0 52 65.4
Nitab4.5_0026868g0020 Nicotiana tabacum HOM05D002037 ORTHO05D005261 2.3e-13 83.2 52 69.2
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 3.5e-09 69.3 38 89.5
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 7.7e-09 68.2 33 84.8
EL10Ac7g17257 Beta vulgaris HOM05D002037 ORTHO05D021575 3.3e-07 62.8 39 79.5
QL12p030705 Quercus lobata HOM05D007909 ORTHO05D021575 3.3e-07 62.8 39 79.5
Cfa014748 Carpinus fangiana HOM05D000549 ORTHO05D021575 2.1e-06 60.1 37 81.1
BraA05t20162Z Brassica rapa HOM05D003335 ORTHO05D003853 2.8e-06 59.7 223 26.0
Nitab4.5_0026868g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 3.6e-06 59.3 37 75.7
BcaC02g11420 Brassica carinata HOM05D003335 ORTHO05D003853 4.7e-06 58.9 223 26.0
A05p12180 Brassica napus HOM05D003335 ORTHO05D003853 4.7e-06 58.9 223 26.0
C04p15750 Brassica napus HOM05D003335 ORTHO05D003853 4.7e-06 58.9 223 26.0
BolC4t23145H Brassica oleracea HOM05D003335 ORTHO05D003853 4.7e-06 58.9 223 26.0


User provided reference genes

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