Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 2.8e-31 137.9 66 100.0
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 3.6e-26 120.9 64 84.4
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 4.7e-26 120.6 64 85.9
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 6.1e-26 120.2 64 82.8
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 6.1e-26 120.2 64 84.4
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 6.1e-26 120.2 64 84.4
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 6.1e-26 120.2 63 85.7
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 6.1e-26 120.2 64 84.4
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 8.0e-26 119.8 64 84.4
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 1.0e-25 119.4 64 82.8
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 1.4e-25 119.0 64 81.2
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 1.4e-25 119.0 64 84.4
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 1.4e-25 119.0 64 82.8
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 1.4e-25 119.0 64 82.8
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 1.8e-25 118.6 64 82.8
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 1.8e-25 118.6 64 82.8
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 1.8e-25 118.6 64 81.2
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 1.8e-25 118.6 64 84.4
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 1.8e-25 118.6 64 82.8
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 2.3e-25 118.2 64 81.2
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 2.3e-25 118.2 64 81.2
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 2.3e-25 118.2 64 81.2
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 2.3e-25 118.2 64 81.2
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 2.3e-25 118.2 64 81.2
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 2.3e-25 118.2 64 81.2
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 2.3e-25 118.2 64 84.4
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 2.3e-25 118.2 64 82.8
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 3.0e-25 117.9 64 81.2
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 3.0e-25 117.9 64 81.2
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 3.0e-25 117.9 64 81.2
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 3.0e-25 117.9 64 81.2
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 3.0e-25 117.9 64 82.8
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 3.0e-25 117.9 64 82.8
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 4.0e-25 117.5 64 82.8
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 4.0e-25 117.5 64 82.8
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 4.0e-25 117.5 63 82.5
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 4.0e-25 117.5 64 81.2
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 5.2e-25 117.1 64 81.2
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 6.8e-25 116.7 64 81.2
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 6.8e-25 116.7 64 81.2
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 6.8e-25 116.7 64 79.7
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 6.8e-25 116.7 64 79.7
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 6.8e-25 116.7 64 78.1
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 6.8e-25 116.7 64 81.2
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 6.8e-25 116.7 64 81.2
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 6.8e-25 116.7 64 81.2
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 8.8e-25 116.3 64 82.8
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 1.2e-24 115.9 64 81.2
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 1.2e-24 115.9 64 79.7
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 1.2e-24 115.9 63 82.5
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 1.2e-24 115.9 64 79.7
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 1.2e-24 115.9 64 79.7
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 1.5e-24 115.5 64 78.1
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 1.5e-24 115.5 64 78.1
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 1.5e-24 115.5 64 79.7
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 1.5e-24 115.5 64 79.7
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 1.5e-24 115.5 64 79.7
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 2.0e-24 115.2 64 81.2
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 2.0e-24 115.2 64 81.2
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 2.0e-24 115.2 64 79.7
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 2.0e-24 115.2 64 78.1
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 2.6e-24 114.8 64 81.2
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 2.6e-24 114.8 64 81.2
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 2.6e-24 114.8 64 81.2
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 3.4e-24 114.4 64 79.7
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 3.4e-24 114.4 64 79.7
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 3.4e-24 114.4 64 79.7
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 4.4e-24 114.0 64 78.1
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 4.4e-24 114.0 64 79.7
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 4.4e-24 114.0 64 79.7
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 4.4e-24 114.0 64 79.7
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 4.4e-24 114.0 64 79.7
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 4.4e-24 114.0 64 79.7
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 5.7e-24 113.6 64 79.7
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 5.7e-24 113.6 64 79.7
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 5.7e-24 113.6 64 78.1
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 5.7e-24 113.6 64 79.7
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 7.5e-24 113.2 64 79.7
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 7.5e-24 113.2 64 79.7
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 7.5e-24 113.2 64 79.7
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 7.5e-24 113.2 64 79.7
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 9.8e-24 112.8 64 78.1
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 9.8e-24 112.8 64 76.6
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 9.8e-24 112.8 64 78.1
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 1.3e-23 112.5 65 80.0
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 1.3e-23 112.5 64 79.7
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 1.3e-23 112.5 64 79.7
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 1.3e-23 112.5 64 81.2
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 1.7e-23 112.1 64 78.1
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 1.7e-23 112.1 64 78.1
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 1.7e-23 112.1 64 78.1
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 2.2e-23 111.7 64 78.1
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 2.2e-23 111.7 64 76.6
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 2.2e-23 111.7 64 76.6
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 2.2e-23 111.7 64 76.6
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 2.2e-23 111.7 64 76.6
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 2.8e-23 111.3 64 76.6
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 2.8e-23 111.3 64 78.1
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 2.8e-23 111.3 64 78.1
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 4.8e-23 110.5 63 77.8
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 4.8e-23 110.5 64 79.7
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 4.8e-23 110.5 64 79.7
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 4.8e-23 110.5 64 76.6
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 4.8e-23 110.5 64 78.1
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 4.8e-23 110.5 64 73.4
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 6.3e-23 110.2 64 73.4
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 6.3e-23 110.2 64 76.6
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 6.3e-23 110.2 59 81.4
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 8.3e-23 109.8 64 76.6
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 1.1e-22 109.4 64 78.1
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 1.1e-22 109.4 64 76.6
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.4e-22 109.0 64 78.1
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 1.8e-22 108.6 64 71.9
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 1.8e-22 108.6 59 81.4
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.8e-22 108.6 64 75.0
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 2.4e-22 108.2 64 76.6
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 3.1e-22 107.8 64 75.0
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 4.1e-22 107.5 64 76.6
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 5.4e-22 107.1 64 75.0
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 9.1e-22 106.3 64 76.6
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 7.7e-21 103.2 79 64.6
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 1.0e-20 102.8 64 76.6
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 1.7e-20 102.1 64 68.8
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.9e-20 101.3 64 68.8
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.9e-20 101.3 64 68.8
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 2.9e-20 101.3 64 71.9
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 1.9e-19 98.6 65 69.2
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 1.9e-19 98.6 64 70.3
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 1.2e-18 95.9 64 67.2
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 1.4e-17 92.4 50 80.0
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 2.0e-16 88.6 44 88.6
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 4.9e-15 84.0 49 75.5
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 4.9e-15 84.0 49 75.5
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 4.9e-15 84.0 49 77.6
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 3.1e-14 81.3 49 75.5
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 3.1e-14 81.3 50 70.0
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 2.9e-12 74.7 46 76.1
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 6.6e-12 73.6 45 71.1
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 8.3e-07 56.6 55 47.3


User provided reference genes

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