Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc129.57 Carica papaya HOM05D001377 ORTHO05D001221 5.8e-305 1050.8 882 100.0
Duzib264G0128 Durio zibethinus HOM05D001377 ORTHO05D001221 1.9e-77 295.0 1053 46.6
COL.COLO4_11633 Corchorus olitorius HOM05D001034 ORTHO05D000955 7.5e-71 273.1 1006 39.9
Sed0021007 Sechium edule HOM05D001377 ORTHO05D001221 6.4e-62 243.4 820 52.0
ClCG01G017910 Citrullus lanatus HOM05D001377 ORTHO05D001221 3.0e-59 234.6 1039 45.6
Manes.13G107600 Manihot esculenta HOM05D001377 ORTHO05D001221 8.7e-59 233.0 810 43.5
Thhalv10003578m.g Eutrema salsugineum HOM05D001377 ORTHO05D001221 1.6e-57 228.8 978 43.1
Sed0013236 Sechium edule HOM05D001377 ORTHO05D001221 1.6e-57 228.8 1041 43.8
Gorai.003G033100 Gossypium raimondii HOM05D001377 ORTHO05D001221 8.1e-57 226.5 986 43.6
Sabra12G0023500 Salix brachista HOM05D001377 ORTHO05D001221 8.1e-57 226.5 1029 48.8
Aa31LG1G16300 Aethionema arabicum HOM05D001377 ORTHO05D001221 1.4e-56 225.7 978 43.1
CARHR279770 Cardamine hirsuta HOM05D001377 ORTHO05D001221 1.8e-56 225.3 941 42.8
Gohir.D03G031500 Gossypium hirsutum HOM05D001377 ORTHO05D001221 2.6e-55 221.5 986 40.2
Haze_03970 Corylus avellana HOM05D001377 ORTHO05D001221 9.9e-55 219.5 1087 43.1
THA.LOC104815216 Tarenaya hassleriana HOM05D001377 ORTHO05D001221 1.3e-54 219.2 1022 45.7
Dinv23061 Davidia involucrata HOM05D001377 ORTHO05D001221 7.1e-53 213.4 1001 44.6
Potri.012G034300 Populus trichocarpa HOM05D001377 ORTHO05D001221 7.8e-52 209.9 1029 48.7
Ciclev10024751m.g Citrus clementina HOM05D001377 ORTHO05D001221 5.1e-51 207.2 1061 46.6
Eucgr.I00661 Eucalyptus grandis HOM05D001377 ORTHO05D001221 1.6e-49 202.2 1075 40.2
MELO3C007665.2 Cucumis melo HOM05D001377 ORTHO05D001221 2.8e-49 201.4 1042 44.4
AL8G43490 Arabidopsis lyrata HOM05D001377 ORTHO05D001221 1.8e-48 198.7 1021 39.2
CsaV3_6G044430 Cucumis sativus L. HOM05D001377 ORTHO05D001221 1.8e-48 198.7 1027 45.4
Ca_22089_v3 Cicer arietinum L. HOM05D001377 ORTHO05D001221 2.4e-48 198.4 1024 32.3
Atru.chr3.1079 Acer truncatum HOM05D001377 ORTHO05D001221 5.3e-48 197.2 1005 45.1
Lalb_Chr16g0379031 Lupinus albus HOM05D001377 ORTHO05D001221 3.4e-47 194.5 804 43.2
Gohir.D11G212000 Gossypium hirsutum HOM05D001377 ORTHO05D001221 6.4e-46 190.3 1034 40.0
Gorai.007G227800 Gossypium raimondii HOM05D001377 ORTHO05D001221 1.4e-45 189.1 1040 38.9
Lj4g0025248 Lotus japonicus HOM05D001377 ORTHO05D001221 2.4e-45 188.3 1019 39.6
SGA_v2.0_scaffold121G33074 Striga asiatica HOM05D001377 ORTHO05D001221 1.2e-44 186.0 857 41.0
AT5G65770 Arabidopsis thaliana HOM05D001377 ORTHO05D001221 2.1e-44 185.3 969 42.4
Gohir.A02G148800 Gossypium hirsutum HOM05D001377 ORTHO05D001221 2.1e-44 185.3 985 39.7
AT5G65780 Arabidopsis thaliana HOM05D001377 ORTHO05D001221 1.3e-43 182.6 977 42.3
Lj4A168T50 Lonicera japonica HOM05D001377 ORTHO05D001221 5.1e-43 180.6 1052 36.8
Manes.12G118800 Manihot esculenta HOM05D001377 ORTHO05D001221 2.8e-41 174.9 1063 40.0
PGR004G0636 Punica granatum HOM05D001377 ORTHO05D001221 2.8e-41 174.9 989 45.6
Psat4g080640 Pisum sativum HOM05D001377 ORTHO05D001221 3.7e-41 174.5 1050 35.0
QL06p038381 Quercus lobata HOM05D001377 ORTHO05D001221 1.2e-39 169.5 1036 46.7
Medtr4g097580 Medicago truncatula HOM05D001377 ORTHO05D001221 2.2e-38 165.2 1050 40.3
Thecc.01G078400 Theobroma cacao HOM05D001377 ORTHO05D001221 2.5e-37 161.8 1077 39.1
arahy.Tifrunner.gnm1.ann1.JN41X7 Arachis hypogaea HOM05D001377 ORTHO05D001221 3.2e-37 161.4 1047 41.8
Duzib147G1298 Durio zibethinus HOM05D001377 ORTHO05D001221 4.2e-37 161.0 1075 41.6
Gohir.A11G211100 Gossypium hirsutum HOM05D001377 ORTHO05D001221 5.5e-37 160.6 1030 40.0
RcHm_v2.0_Chr2g0109151 Rosa chinensis HOM05D001377 ORTHO05D001221 1.2e-36 159.5 1090 44.0
EL10Ac6g14944 Beta vulgaris HOM05D001377 ORTHO05D001221 7.9e-36 156.8 845 42.5
CiPaw.08G149100 Carya illinoinensis HOM05D001377 ORTHO05D001221 1.0e-35 156.4 1040 37.9
TWI77G0068 Tripterygium wilfordii HOM05D001377 ORTHO05D001221 1.1e-34 152.9 1071 43.6
THA.LOC104826508 Tarenaya hassleriana HOM05D001377 ORTHO05D001221 3.3e-34 151.4 1025 37.3
CiPaw.07G038400 Carya illinoinensis HOM05D001377 ORTHO05D001221 4.3e-34 151.0 1038 37.0
Ah.03g139510 Amaranthus hybridus HOM05D001034 ORTHO05D000955 5.6e-34 150.6 1021 34.9
MD02G1191400 Malus domestica HOM05D001377 ORTHO05D001221 1.3e-33 149.4 1088 33.6
Actinidia36410 Actinidia chinensis HOM05D001377 ORTHO05D001221 6.2e-33 147.1 345 35.1
MBI16_g11022_MAGBIO Magnolia biondii HOM05D001377 ORTHO05D001221 1.4e-32 146.0 623 40.1
CSS0028126 Camellia sinensis var. sinensis HOM05D001377 ORTHO05D001221 1.8e-32 145.6 1011 40.7
Glyma.05G109300 Glycine max HOM05D001377 ORTHO05D001221 3.1e-32 144.8 1060 35.9
BcaC01g02835 Brassica carinata HOM05D001377 ORTHO05D001221 1.5e-31 142.5 976 42.6
Sp2g28870 Schrenkiella parvula HOM05D001377 ORTHO05D001221 1.5e-31 142.5 1016 37.2
CSS0016620 Camellia sinensis var. sinensis HOM05D001377 ORTHO05D001221 3.4e-31 141.4 1011 40.8
TPR.G3699 Trifolium pratense HOM05D001377 ORTHO05D001221 4.5e-31 141.0 1011 36.7
MD15G1302600 Malus domestica HOM05D001377 ORTHO05D001221 7.6e-31 140.2 1058 35.5
GSVIVG01007428001 Vitis vinifera HOM05D001377 ORTHO05D001221 1.0e-30 139.8 1100 45.9
Prupe.6G214100 Prunus persica HOM05D001377 ORTHO05D001221 1.7e-30 139.0 1072 37.8
vmacro05373 Vaccinium macrocarpon HOM05D001377 ORTHO05D001221 1.7e-30 139.0 179 67.6
Lalb_Chr09g0335511 Lupinus albus HOM05D001377 ORTHO05D001221 8.4e-30 136.7 825 45.1
C03p59890 Brassica napus HOM05D001377 ORTHO05D001221 2.1e-28 132.1 977 43.5
Hund16591 Selenicereus undatus HOM05D001377 ORTHO05D001221 2.1e-28 132.1 974 34.9
Phvul.003G232200 Phaseolus vulgaris HOM05D001377 ORTHO05D001221 6.0e-28 130.6 1053 38.8
Sc16g0000890 Simmondsia chinensis HOM05D001377 ORTHO05D001221 6.0e-28 130.6 848 45.4
Carub.0008s2667 Capsella rubella HOM05D001377 ORTHO05D001221 7.9e-28 130.2 973 42.7
Dinv26970 Davidia involucrata HOM05D001377 ORTHO05D001221 7.9e-28 130.2 186 58.6
Cc07_g07520 Coffea canephora HOM05D001377 ORTHO05D001221 2.3e-27 128.6 398 37.2
BolC3t18254H Brassica oleracea HOM05D001377 ORTHO05D001221 8.7e-27 126.7 987 42.4
Glyma.17G157900 Glycine max HOM05D001377 ORTHO05D001221 1.1e-26 126.3 1049 38.9
Rhsim10G0092900 Rhododendron simsii HOM05D001377 ORTHO05D001221 7.4e-26 123.6 402 41.3
CSS0008216 Camellia sinensis var. sinensis HOM05D001377 ORTHO05D001221 2.8e-25 121.7 1001 43.0
CANSAT01G3006 Cannabis sativa HOM05D001377 ORTHO05D001221 2.4e-24 118.6 1060 44.1
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 2.0e-23 115.5 341 36.1
SalBow3G2766 Salvia bowleyana HOM05D001377 ORTHO05D001221 3.4e-23 114.8 415 34.7
SHI11956 Sapria himalayana HOM05D001034 ORTHO05D000955 5.9e-23 114.0 849 36.4
Oeu061811.2 Olea europaea HOM05D001377 ORTHO05D001221 1.7e-22 112.5 422 38.2
Migut.H00316 Erythranthe guttata HOM05D001377 ORTHO05D001221 2.9e-22 111.7 401 38.7
MSTRG.23648 Avicennia marina HOM05D001377 ORTHO05D001221 5.0e-22 110.9 841 47.6
FAN23G0417 Fragaria x ananassa HOM05D001377 ORTHO05D001221 5.5e-21 107.5 409 39.1
arahy.Tifrunner.gnm1.ann1.90HUEH Arachis hypogaea HOM05D001377 ORTHO05D001221 9.4e-21 106.7 1052 37.0
C09p10670 Brassica napus HOM05D001377 ORTHO05D001221 1.6e-20 105.9 981 39.7
TAR381G1251 Trochodendron aralioides HOM05D001377 ORTHO05D001221 2.1e-20 105.5 611 54.2
AUR62003155 Chenopodium quinoa HOM05D001377 ORTHO05D001221 3.6e-20 104.8 964 38.2
AUR62007977 Chenopodium quinoa HOM05D001377 ORTHO05D001221 1.8e-19 102.4 1034 36.7
VMungo0251G3305 Vigna mungo HOM05D001377 ORTHO05D001221 3.9e-19 101.3 987 40.6
BcaC04g23249 Brassica carinata HOM05D001377 ORTHO05D001221 5.1e-19 100.9 982 40.0
BolC9t53964H Brassica oleracea HOM05D001377 ORTHO05D001221 5.1e-19 100.9 982 40.0
BcaB04g20027 Brassica carinata HOM05D001377 ORTHO05D001221 2.5e-18 98.6 984 40.0
BraA09t36567Z Brassica rapa HOM05D001377 ORTHO05D001221 3.3e-18 98.2 982 39.5
A09p09150 Brassica napus HOM05D001377 ORTHO05D001221 7.4e-18 97.1 982 39.0
CDE06G1107 Ceratophyllum demersum HOM05D001377 ORTHO05D001221 1.3e-17 96.3 185 35.1
DCAR_025832 Daucus carota HOM05D001377 ORTHO05D001221 1.4e-16 92.8 417 26.6
ATR0807G122 Amborella trichopoda HOM05D001377 ORTHO05D001221 2.0e-15 89.0 176 34.7
A06p32630 Brassica napus HOM05D000737 ORTHO05D000581 2.0e-15 89.0 79 65.8
BraA06t26191Z Brassica rapa HOM05D000737 ORTHO05D000581 2.0e-15 89.0 79 65.8
arahy.Tifrunner.gnm1.ann1.Q3TKD3 Arachis hypogaea HOM05D001377 ORTHO05D001221 3.4e-15 88.2 75 66.7
FAN26G2388 Fragaria x ananassa HOM05D001377 ORTHO05D001221 3.4e-15 88.2 1095 39.4
Peaxi162Scf00096g01717 Petunia axillaris HOM05D001377 ORTHO05D001221 3.4e-15 88.2 404 34.7
Lsat_1_v5_gn_4_159441 Lactuca sativa HOM05D001377 ORTHO05D001221 2.9e-14 85.1 83 54.2
Actinidia36411 Actinidia chinensis HOM05D001377 ORTHO05D001221 1.1e-13 83.2 325 30.5
Sopen02g036530 Solanum pennellii HOM05D001377 ORTHO05D001221 1.4e-13 82.8 86 57.0
ECA232G1830 Erigeron canadensis HOM05D001377 ORTHO05D001221 1.9e-13 82.4 589 50.3
HPP92_017692 Vanilla planifolia HOM05D001377 ORTHO05D001221 1.9e-13 82.4 712 32.7
CDE04G2677 Ceratophyllum demersum HOM05D001377 ORTHO05D001221 2.5e-13 82.0 411 26.8
FvH4_1g18512 Fragaria vesca HOM05D001377 ORTHO05D001221 5.5e-13 80.9 1097 39.6
Actinidia11953 Actinidia chinensis HOM05D001377 ORTHO05D001221 7.2e-13 80.5 106 49.1
PGSC0003DMG400021400 Solanum tuberosum HOM05D001377 ORTHO05D001221 1.2e-12 79.7 115 47.8
CAN.G1343.20 Capsicum annuum HOM05D001377 ORTHO05D001221 1.6e-12 79.3 68 63.2
Solyc02g091960.4 Solanum lycopersicum HOM05D001377 ORTHO05D001221 2.1e-12 79.0 117 47.0
unitig_0.g494 Utricularia gibba HOM05D001377 ORTHO05D001221 2.1e-12 79.0 185 51.9
Nitab4.5_0003478g0030 Nicotiana tabacum HOM05D001377 ORTHO05D001221 4.7e-12 77.8 424 34.2
Glyma.01G196400 Glycine max HOM05D001377 ORTHO05D001221 7.9e-12 77.0 269 30.5
Glyma.11G045200 Glycine max HOM05D001377 ORTHO05D001221 7.9e-12 77.0 81 59.3
HanXRQChr17g0567751 Helianthus annuus HOM05D001377 ORTHO05D001221 1.8e-11 75.9 872 39.0
FAN19G2689 Fragaria x ananassa HOM05D001377 ORTHO05D001221 5.1e-11 74.3 1036 37.8
Nn6g34551 Nelumbo nucifera HOM05D001377 ORTHO05D001221 6.7e-11 73.9 120 45.0
FAN28G2309 Fragaria x ananassa HOM05D001377 ORTHO05D001221 8.8e-11 73.6 1061 37.7
Nitab4.5_0002390g0010 Nicotiana tabacum HOM05D001377 ORTHO05D001221 1.5e-10 72.8 423 32.4
Hma1.2p1_0477F.1_g161010 Hydrangea macrophylla HOM05D001377 ORTHO05D001221 2.6e-10 72.0 124 44.4
PSO017G3294 Papaver somniferum HOM05D001377 ORTHO05D001221 1.3e-09 69.7 103 46.6
Os01g0767000 Oryza sativa ssp. japonica HOM05D001377 ORTHO05D001221 8.2e-09 67.0 184 51.1
Zm00001eb152080 Zea mays HOM05D001377 ORTHO05D001221 1.8e-08 65.9 171 37.4
Aqoxy5G00825 Aquilegia oxysepala HOM05D001377 ORTHO05D001221 4.1e-08 64.7 149 36.2
MBI16_g11023_MAGBIO Magnolia biondii HOM05D001377 ORTHO05D001221 1.5e-07 62.8 67 49.3
PSO170G4358 Papaver somniferum HOM05D001377 ORTHO05D001221 2.0e-07 62.4 122 36.9
SEGI_02593 Sequoiadendron giganteum HOM05D001377 ORTHO05D001221 2.2e-06 58.9 72 45.8
Sed0000445 Sechium edule HOM05D001377 ORTHO05D001221 6.5e-06 57.4 89 42.7
arahy.Tifrunner.gnm1.ann1.T8IHE2 Arachis hypogaea HOM05D000795 ORTHO05D001221 8.5e-06 57.0 39 76.9
Hma1.2p1_0477F.1_g161020 Hydrangea macrophylla HOM05D001377 ORTHO05D001221 8.5e-06 57.0 180 50.6


User provided reference genes

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