Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc12.282 Carica papaya HOM05D004988 ORTHO05D005845 4.0e-84 314.7 155 100.0
Haze_09701 Corylus avellana HOM05D004988 ORTHO05D005845 7.4e-22 107.8 102 53.9
Cfa020320 Carpinus fangiana HOM05D004988 ORTHO05D005845 1.5e-19 100.1 63 73.0
CiPaw.11G191700 Carya illinoinensis HOM05D004988 ORTHO05D005845 5.8e-19 98.2 65 69.2
Manes.03G131500 Manihot esculenta HOM05D004988 ORTHO05D005845 1.3e-18 97.1 63 73.0
QL08p009463 Quercus lobata HOM05D004988 ORTHO05D005845 1.7e-18 96.7 63 73.0
GSVIVG01037674001 Vitis vinifera HOM05D004988 ORTHO05D005845 2.2e-18 96.3 63 71.4
RcHm_v2.0_Chr5g0040391 Rosa chinensis HOM05D004988 ORTHO05D005845 2.9e-18 95.9 63 68.3
FvH4_3g23000 Fragaria vesca HOM05D004988 ORTHO05D005845 3.8e-18 95.5 65 63.1
FAN11G0321 Fragaria x ananassa HOM05D004988 ORTHO05D005845 3.8e-18 95.5 65 63.1
FAN25G1441 Fragaria x ananassa HOM05D004988 ORTHO05D005845 3.8e-18 95.5 65 64.6
FAN25G2375 Fragaria x ananassa HOM05D004988 ORTHO05D005845 3.8e-18 95.5 65 64.6
Actinidia35358 Actinidia chinensis HOM05D004988 ORTHO05D005845 6.5e-18 94.7 63 73.0
Phvul.008G268900 Phaseolus vulgaris HOM05D004988 ORTHO05D005845 1.1e-17 94.0 63 66.7
Lj1C874G10 Lonicera japonica HOM05D004988 ORTHO05D005845 1.4e-17 93.6 63 71.4
TWI38G0959 Tripterygium wilfordii HOM05D004988 ORTHO05D005845 1.4e-17 93.6 63 69.8
Glyma.02G292202 Glycine max HOM05D004988 ORTHO05D005845 4.2e-17 92.0 63 63.5
Potri.011G089500 Populus trichocarpa HOM05D004988 ORTHO05D005845 7.1e-17 91.3 63 65.1
CSS0026270 Camellia sinensis var. sinensis HOM05D004988 ORTHO05D005845 9.3e-17 90.9 63 63.5
CSS0035479 Camellia sinensis var. sinensis HOM05D004988 ORTHO05D005845 9.3e-17 90.9 63 63.5
RhsimUnG0249000 Rhododendron simsii HOM05D004988 ORTHO05D005845 1.6e-16 90.1 69 59.4
MD11G1214700 Malus domestica HOM05D004988 ORTHO05D005845 2.1e-16 89.7 63 61.9
Medtr5g093110 Medicago truncatula HOM05D004988 ORTHO05D005845 2.7e-16 89.4 63 61.9
arahy.Tifrunner.gnm1.ann1.ZUJ4QN Arachis hypogaea HOM05D004988 ORTHO05D005845 3.5e-16 89.0 74 52.7
DCAR_009454 Daucus carota HOM05D004988 ORTHO05D005845 7.9e-16 87.8 63 65.1
Sabra11G0073600 Salix brachista HOM05D004988 ORTHO05D005845 7.9e-16 87.8 63 60.3
Sabra11G0079200 Salix brachista HOM05D004988 ORTHO05D005845 7.9e-16 87.8 63 60.3
VMungo0647G1120 Vigna mungo HOM05D004988 ORTHO05D005845 7.9e-16 87.8 63 61.9
Ciclev10010304m.g Citrus clementina HOM05D004988 ORTHO05D005845 1.3e-15 87.0 62 66.1
TPR.G29630 Trifolium pratense HOM05D004988 ORTHO05D005845 1.8e-15 86.7 63 60.3
HanXRQChr03g0079801 Helianthus annuus HOM05D004988 ORTHO05D005845 2.3e-15 86.3 62 61.3
Psat2g012000 Pisum sativum HOM05D004988 ORTHO05D005845 2.3e-15 86.3 63 60.3
FAN21G3129 Fragaria x ananassa HOM05D004988 ORTHO05D005845 3.0e-15 85.9 59 64.4
Nn1g03486 Nelumbo nucifera HOM05D004988 ORTHO05D005845 3.0e-15 85.9 63 61.9
Duzib213G0327 Durio zibethinus HOM05D004988 ORTHO05D005845 5.1e-15 85.1 63 63.5
Gohir.D05G372400 Gossypium hirsutum HOM05D004988 ORTHO05D005845 6.7e-15 84.7 62 61.3
Gorai.009G440600 Gossypium raimondii HOM05D004988 ORTHO05D005845 6.7e-15 84.7 62 61.3
PSO541G0855 Papaver somniferum HOM05D004988 ORTHO05D005845 6.7e-15 84.7 63 65.1
TPR.G1199 Trifolium pratense HOM05D004988 ORTHO05D005845 6.7e-15 84.7 63 58.7
Gohir.A04G013900 Gossypium hirsutum HOM05D004988 ORTHO05D005845 1.1e-14 84.0 62 61.3
Hund02015 Selenicereus undatus HOM05D004988 ORTHO05D005845 1.9e-14 83.2 63 58.7
vmacro09701 Vaccinium macrocarpon HOM05D004988 ORTHO05D005845 2.5e-14 82.8 63 60.3
HanXRQChr03g0079751 Helianthus annuus HOM05D004988 ORTHO05D005845 3.3e-14 82.4 62 58.1
Glyma.14G022400 Glycine max HOM05D004988 ORTHO05D005845 4.3e-14 82.0 63 57.1
Oeu062583.1 Olea europaea HOM05D004988 ORTHO05D005845 4.3e-14 82.0 63 63.5
Carub.0003s2042 Capsella rubella HOM05D004988 ORTHO05D005845 9.7e-14 80.9 63 63.5
Thecc.07G033400 Theobroma cacao HOM05D004988 ORTHO05D005845 9.7e-14 80.9 62 61.3
ECA240G2090 Erigeron canadensis HOM05D004988 ORTHO05D005845 1.3e-13 80.5 63 58.7
Cc05_g13960 Coffea canephora HOM05D004988 ORTHO05D005845 1.6e-13 80.1 63 60.3
LjContig00272g0019234 Lotus japonicus HOM05D004988 ORTHO05D005845 1.6e-13 80.1 63 55.6
SGA_v2.0_scaffold36G14386 Striga asiatica HOM05D004988 ORTHO05D005845 1.6e-13 80.1 63 65.1
ClCG10G004940 Citrullus lanatus HOM05D004988 ORTHO05D005845 2.2e-13 79.7 74 52.7
Migut.M01745 Erythranthe guttata HOM05D004988 ORTHO05D005845 2.2e-13 79.7 63 60.3
AL3G34200 Arabidopsis lyrata HOM05D004988 ORTHO05D005845 2.8e-13 79.3 63 61.9
BolC5t33100H Brassica oleracea HOM05D004988 ORTHO05D005845 2.8e-13 79.3 63 58.7
arahy.Tifrunner.gnm1.ann1.E8M5A0 Arachis hypogaea HOM05D004988 ORTHO05D005845 3.7e-13 79.0 63 54.0
Lsat_1_v5_gn_9_90520 Lactuca sativa HOM05D004988 ORTHO05D005845 3.7e-13 79.0 63 55.6
BraA05t21720Z Brassica rapa HOM05D004988 ORTHO05D005845 4.8e-13 78.6 63 58.7
Peaxi162Scf00350g00216 Petunia axillaris HOM05D004988 ORTHO05D005845 4.8e-13 78.6 63 57.1
Sc16g0005920 Simmondsia chinensis HOM05D004988 ORTHO05D005845 4.8e-13 78.6 62 59.7
Aqoxy1G03129 Aquilegia oxysepala HOM05D004988 ORTHO05D005845 1.4e-12 77.0 63 58.7
Eucgr.F00744 Eucalyptus grandis HOM05D004988 ORTHO05D005845 1.4e-12 77.0 63 57.1
MSTRG.6931 Avicennia marina HOM05D004988 ORTHO05D005845 3.1e-12 75.9 63 58.7
THA.LOC104817863 Tarenaya hassleriana HOM05D004988 ORTHO05D005845 3.1e-12 75.9 84 46.4
Aa31LG8G7300 Aethionema arabicum HOM05D004988 ORTHO05D005845 5.3e-12 75.1 63 54.0
AUR62020409 Chenopodium quinoa HOM05D004988 ORTHO05D005845 6.9e-12 74.7 64 54.7
CARHR096230 Cardamine hirsuta HOM05D004988 ORTHO05D005845 9.0e-12 74.3 63 55.6
Thhalv10022259m.g Eutrema salsugineum HOM05D004988 ORTHO05D005845 9.0e-12 74.3 63 55.6
Sp3g18490 Schrenkiella parvula HOM05D004988 ORTHO05D005845 9.0e-12 74.3 63 57.1
Nitab4.5_0007776g0010 Nicotiana tabacum HOM05D004988 ORTHO05D005845 1.5e-11 73.6 63 50.8
Sed0003845 Sechium edule HOM05D004988 ORTHO05D005845 2.0e-11 73.2 63 54.0
Solyc10g018530.2 Solanum lycopersicum HOM05D004988 ORTHO05D005845 2.0e-11 73.2 63 54.0
Sopen10g008290 Solanum pennellii HOM05D004988 ORTHO05D005845 2.0e-11 73.2 63 54.0
EL10Ac4g07775 Beta vulgaris HOM05D004988 ORTHO05D005845 2.6e-11 72.8 63 57.1
CAN.G1568.1 Capsicum annuum HOM05D004988 ORTHO05D005845 2.6e-11 72.8 63 52.4
AUR62015808 Chenopodium quinoa HOM05D004988 ORTHO05D005845 2.6e-11 72.8 64 53.1
Nitab4.5_0000882g0070 Nicotiana tabacum HOM05D004988 ORTHO05D005845 2.6e-11 72.8 63 50.8
CsaV3_3G004590 Cucumis sativus L. HOM05D004988 ORTHO05D005845 4.5e-11 72.0 63 55.6
BcaNung07078 Brassica carinata HOM05D000284 ORTHO05D001229 1.0e-10 70.9 57 61.4
PGR083G2184 Punica granatum HOM05D004988 ORTHO05D005845 1.0e-10 70.9 62 51.6
HPP92_001590 Vanilla planifolia HOM05D004988 ORTHO05D005845 3.8e-10 68.9 63 49.2
HPP92_001598 Vanilla planifolia HOM05D004988 ORTHO05D005845 3.8e-10 68.9 63 49.2
A05p28340 Brassica napus HOM05D000284 ORTHO05D005845 1.4e-09 67.0 54 61.1
BcaNung06350 Brassica carinata HOM05D004988 ORTHO05D005845 4.2e-09 65.5 53 60.4
C05p43830 Brassica napus HOM05D000284 ORTHO05D005845 4.2e-09 65.5 53 60.4
ATR0794G119 Amborella trichopoda HOM05D004988 ORTHO05D005845 5.5e-09 65.1 63 47.6
Zm00001eb352660 Zea mays HOM05D004988 ORTHO05D005845 1.4e-07 60.5 63 44.4
Zm00001eb352670 Zea mays HOM05D004988 ORTHO05D005845 1.4e-07 60.5 63 44.4
MELO3C032293.2 Cucumis melo HOM05D004988 ORTHO05D005845 1.1e-06 57.4 51 54.9
Os05g0498300 Oryza sativa ssp. japonica HOM05D004988 ORTHO05D005845 2.5e-06 56.2 63 42.9


User provided reference genes

Program Settings