Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc113.59 Carica papaya HOM05D007322 ORTHO05D009029 2.3e-69 265.4 129 100.0
Thecc.02G087000 Theobroma cacao HOM05D007322 ORTHO05D009029 4.8e-43 177.9 110 76.4
COL.COLO4_11791 Corchorus olitorius HOM05D007322 ORTHO05D009029 4.1e-42 174.9 128 67.2
QL10p025368 Quercus lobata HOM05D007322 ORTHO05D009029 4.1e-42 174.9 110 77.3
Dinv24285 Davidia involucrata HOM05D007322 ORTHO05D009029 2.0e-41 172.6 110 75.5
Atru.chr6.627 Acer truncatum HOM05D007322 ORTHO05D009029 1.7e-40 169.5 110 74.5
Haze_01685 Corylus avellana HOM05D007322 ORTHO05D009029 1.7e-40 169.5 110 73.6
Gohir.D02G214700 Gossypium hirsutum HOM05D007322 ORTHO05D009029 2.2e-40 169.1 110 73.6
Duzib132G0092 Durio zibethinus HOM05D007322 ORTHO05D009029 2.9e-40 168.7 110 73.6
Gorai.005G242500 Gossypium raimondii HOM05D007322 ORTHO05D009029 5.0e-40 167.9 110 74.5
Cfa005519 Carpinus fangiana HOM05D007322 ORTHO05D009029 6.5e-40 167.5 110 72.7
Gohir.A03G193600 Gossypium hirsutum HOM05D007322 ORTHO05D009029 1.5e-39 166.4 110 72.7
Manes.07G016500 Manihot esculenta HOM05D007322 ORTHO05D009029 1.5e-39 166.4 110 73.6
Hma1.2p1_0217F.1_g092060 Hydrangea macrophylla HOM05D007322 ORTHO05D009029 2.5e-39 165.6 110 70.9
THA.LOC104816934 Tarenaya hassleriana HOM05D007322 ORTHO05D009029 2.5e-39 165.6 110 72.7
CSS0017191 Camellia sinensis var. sinensis HOM05D007322 ORTHO05D009029 3.2e-39 165.2 110 70.9
Potri.003G019000 Populus trichocarpa HOM05D007322 ORTHO05D009029 3.2e-39 165.2 110 72.7
AT1G10910 Arabidopsis thaliana HOM05D007322 ORTHO05D009029 4.2e-39 164.9 110 71.8
TWI14G1121 Tripterygium wilfordii HOM05D007322 ORTHO05D009029 7.2e-39 164.1 110 73.6
Prupe.1G569600 Prunus persica HOM05D007322 ORTHO05D009029 9.4e-39 163.7 128 63.3
CiPaw.05G044700 Carya illinoinensis HOM05D007322 ORTHO05D009029 1.6e-38 162.9 110 72.7
Lj6g0009763 Lotus japonicus HOM05D007322 ORTHO05D009029 1.6e-38 162.9 110 72.7
Thhalv10007006m.g Eutrema salsugineum HOM05D007322 ORTHO05D009029 2.1e-38 162.5 110 69.1
GSVIVG01022920001 Vitis vinifera HOM05D007322 ORTHO05D009029 4.7e-38 161.4 110 68.2
BcaNung04765 Brassica carinata HOM05D007322 ORTHO05D009029 8.0e-38 160.6 110 69.1
Carub.0001s1049 Capsella rubella HOM05D007322 ORTHO05D009029 1.0e-37 160.2 110 69.1
RcHm_v2.0_Chr7g0222211 Rosa chinensis HOM05D007322 ORTHO05D009029 1.0e-37 160.2 110 70.9
BolC5t29668H Brassica oleracea HOM05D007322 ORTHO05D009029 1.4e-37 159.8 110 69.1
TAR381G0036 Trochodendron aralioides HOM05D007322 ORTHO05D009029 1.4e-37 159.8 110 70.0
AL1G21890 Arabidopsis lyrata HOM05D007322 ORTHO05D009029 1.8e-37 159.5 110 70.9
BcaC05g24974 Brassica carinata HOM05D007322 ORTHO05D009029 3.0e-37 158.7 110 68.2
C05p09280 Brassica napus HOM05D007322 ORTHO05D009029 3.0e-37 158.7 110 68.2
BraA06t23970Z Brassica rapa HOM05D007322 ORTHO05D009029 3.0e-37 158.7 110 68.2
CARHR011130 Cardamine hirsuta HOM05D007322 ORTHO05D009029 3.0e-37 158.7 110 66.4
DCAR_025358 Daucus carota HOM05D007322 ORTHO05D009029 4.0e-37 158.3 110 69.1
Potri.001G211300 Populus trichocarpa HOM05D007322 ORTHO05D009029 4.0e-37 158.3 110 70.0
Sabra03G0010600 Salix brachista HOM05D007322 ORTHO05D009029 4.0e-37 158.3 119 66.4
FvH4_5g29340 Fragaria vesca HOM05D007322 ORTHO05D009029 5.2e-37 157.9 110 70.0
Sp1g09630 Schrenkiella parvula HOM05D007322 ORTHO05D009029 5.2e-37 157.9 110 67.3
Ciclev10000525m.g Citrus clementina HOM05D007322 ORTHO05D009029 8.8e-37 157.1 110 67.3
A06p07690 Brassica napus HOM05D007322 ORTHO05D009029 1.2e-36 156.8 110 67.3
MBI04_g34119_MAGBIO Magnolia biondii HOM05D007322 ORTHO05D009029 1.2e-36 156.8 110 65.5
ClCG10G013500 Citrullus lanatus HOM05D007322 ORTHO05D009029 1.5e-36 156.4 110 70.0
Medtr2g007030 Medicago truncatula HOM05D007322 ORTHO05D009029 1.5e-36 156.4 108 68.5
Sed0025924 Sechium edule HOM05D007322 ORTHO05D009029 2.0e-36 156.0 110 69.1
CAN.G1021.1 Capsicum annuum HOM05D007322 ORTHO05D009029 2.6e-36 155.6 108 67.6
FAN08G0261 Fragaria x ananassa HOM05D007322 ORTHO05D009029 2.6e-36 155.6 110 69.1
MD15G1423900 Malus domestica HOM05D007322 ORTHO05D009029 2.6e-36 155.6 110 66.4
TPR.G2112 Trifolium pratense HOM05D007322 ORTHO05D009029 4.4e-36 154.8 110 67.3
CsaV3_3G043150 Cucumis sativus L. HOM05D007322 ORTHO05D009029 7.5e-36 154.1 110 67.3
Glyma.08G186600 Glycine max HOM05D007322 ORTHO05D009029 7.5e-36 154.1 110 66.4
Nn5g28260 Nelumbo nucifera HOM05D007322 ORTHO05D009029 7.5e-36 154.1 110 66.4
Eucgr.G00576 Eucalyptus grandis HOM05D007322 ORTHO05D009029 9.8e-36 153.7 110 69.1
FAN18G2556 Fragaria x ananassa HOM05D007322 ORTHO05D009029 1.7e-35 152.9 110 70.0
SGA_v2.0_scaffold110G31316 Striga asiatica HOM05D007322 ORTHO05D009029 2.2e-35 152.5 108 66.7
Peaxi162Scf00152g01437 Petunia axillaris HOM05D007322 ORTHO05D009029 2.8e-35 152.1 108 65.7
Psat1g220200 Pisum sativum HOM05D007322 ORTHO05D009029 3.7e-35 151.8 110 65.5
MELO3C026617.2 Cucumis melo HOM05D007322 ORTHO05D009029 4.8e-35 151.4 110 65.5
vmacro19889 Vaccinium macrocarpon HOM05D007322 ORTHO05D009029 6.3e-35 151.0 110 66.4
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 8.3e-35 150.6 110 64.5
Lsat_1_v5_gn_5_105200 Lactuca sativa HOM05D007322 ORTHO05D009029 1.4e-34 149.8 110 63.6
Phvul.006G214900 Phaseolus vulgaris HOM05D007322 ORTHO05D009029 1.4e-34 149.8 110 64.5
EL10Ac6g14069 Beta vulgaris HOM05D007322 ORTHO05D009029 1.8e-34 149.4 110 66.4
Sc06g0002720 Simmondsia chinensis HOM05D007322 ORTHO05D009029 2.4e-34 149.1 110 63.6
MSTRG.20302 Avicennia marina HOM05D007322 ORTHO05D009029 3.1e-34 148.7 108 68.5
Cc02_g22530 Coffea canephora HOM05D007322 ORTHO05D009029 5.4e-34 147.9 110 64.5
HanXRQChr10g0290611 Helianthus annuus HOM05D007322 ORTHO05D009029 5.4e-34 147.9 110 62.7
Lj9C305T7 Lonicera japonica HOM05D007322 ORTHO05D009029 5.4e-34 147.9 110 63.6
Lalb_Chr20g0123451 Lupinus albus HOM05D007322 ORTHO05D009029 5.4e-34 147.9 110 62.7
Aqoxy6G00206 Aquilegia oxysepala HOM05D007322 ORTHO05D009029 1.2e-33 146.7 108 63.9
Rhsim01G0008000 Rhododendron simsii HOM05D007322 ORTHO05D009029 1.6e-33 146.4 110 62.7
Nitab4.5_0003788g0020 Nicotiana tabacum HOM05D007322 ORTHO05D009029 3.5e-33 145.2 108 63.0
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 1.3e-32 143.3 110 63.6
Migut.B00834 Erythranthe guttata HOM05D007322 ORTHO05D009029 2.3e-32 142.5 108 63.9
PGR042G2216 Punica granatum HOM05D007322 ORTHO05D009029 3.8e-32 141.7 108 62.0
Solyc11g040260.2 Solanum lycopersicum HOM05D007322 ORTHO05D009029 1.5e-31 139.8 107 62.6
Sopen11g018100 Solanum pennellii HOM05D007322 ORTHO05D009029 1.5e-31 139.8 107 62.6
Aa31LG1G3950 Aethionema arabicum HOM05D007322 ORTHO05D009029 3.2e-31 138.7 110 60.9
ATR0026G013 Amborella trichopoda HOM05D007322 ORTHO05D009029 9.5e-31 137.1 110 53.6
VMungo0540G0689 Vigna mungo HOM05D007322 ORTHO05D009029 3.6e-30 135.2 99 64.6
Nitab4.5_0000001g0160 Nicotiana tabacum HOM05D007322 ORTHO05D009029 4.7e-30 134.8 130 53.8
Hund12986 Selenicereus undatus HOM05D007322 ORTHO05D009029 2.4e-26 122.5 96 64.6
HPP92_009152 Vanilla planifolia HOM05D007322 ORTHO05D009029 4.1e-26 121.7 108 50.0
Os01g0559500 Oryza sativa ssp. japonica HOM05D007322 ORTHO05D009029 9.2e-26 120.6 110 52.7
Ah.03g137110 Amaranthus hybridus HOM05D007322 ORTHO05D009029 2.0e-25 119.4 111 55.9
ECA234G4037 Erigeron canadensis HOM05D007322 ORTHO05D009029 6.6e-24 114.4 86 61.6
Zm00001eb162220 Zea mays HOM05D007322 ORTHO05D009029 1.1e-23 113.6 108 53.7
Haze_01695 Corylus avellana HOM05D004517 ORTHO05D005366 3.2e-10 68.9 70 54.3
PGSC0003DMG400008423 Solanum tuberosum HOM05D007322 ORTHO05D009029 6.6e-08 61.2 38 65.8


User provided reference genes

Program Settings